Literature DB >> 21892166

Gold nanoparticles for high-throughput genotyping of long-range haplotypes.

Peng Chen1, Dun Pan, Chunhai Fan, Jianhua Chen, Ke Huang, Dongfang Wang, Honglu Zhang, You Li, Guoyin Feng, Peiji Liang, Lin He, Yongyong Shi.   

Abstract

Completion of the Human Genome Project and the HapMap Project has led to increasing demands for mapping complex traits in humans to understand the aetiology of diseases. Identifying variations in the DNA sequence, which affect how we develop disease and respond to pathogens and drugs, is important for this purpose, but it is difficult to identify these variations in large sample sets. Here we show that through a combination of capillary sequencing and polymerase chain reaction assisted by gold nanoparticles, it is possible to identify several DNA variations that are associated with age-related macular degeneration and psoriasis on significant regions of human genomic DNA. Our method is accurate and promising for large-scale and high-throughput genetic analysis of susceptibility towards disease and drug resistance.

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Year:  2011        PMID： 21892166     DOI： 10.1038/nnano.2011.141

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN： 1748-3387            Impact factor:   39.213


  28 in total

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Authors:  Pui-Yan Kwok; Ming Xiao
Journal:  Hum Mutat       Date:  2004-05       Impact factor: 4.878

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Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

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Review 7.  Methods for genotyping single nucleotide polymorphisms.

Authors:  P Y Kwok
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8.  A second generation human haplotype map of over 3.1 million SNPs.

Authors:  Kelly A Frazer; Dennis G Ballinger; David R Cox; David A Hinds; Laura L Stuve; Richard A Gibbs; John W Belmont; Andrew Boudreau; Paul Hardenbol; Suzanne M Leal; Shiran Pasternak; David A Wheeler; Thomas D Willis; Fuli Yu; Huanming Yang; Changqing Zeng; Yang Gao; Haoran Hu; Weitao Hu; Chaohua Li; Wei Lin; Siqi Liu; Hao Pan; Xiaoli Tang; Jian Wang; Wei Wang; Jun Yu; Bo Zhang; Qingrun Zhang; Hongbin Zhao; Hui Zhao; Jun Zhou; Stacey B Gabriel; Rachel Barry; Brendan Blumenstiel; Amy Camargo; Matthew Defelice; Maura Faggart; Mary Goyette; Supriya Gupta; Jamie Moore; Huy Nguyen; Robert C Onofrio; Melissa Parkin; Jessica Roy; Erich Stahl; Ellen Winchester; Liuda Ziaugra; David Altshuler; Yan Shen; Zhijian Yao; Wei Huang; Xun Chu; Yungang He; Li Jin; Yangfan Liu; Yayun Shen; Weiwei Sun; Haifeng Wang; Yi Wang; Ying Wang; Xiaoyan Xiong; Liang Xu; Mary M Y Waye; Stephen K W Tsui; Hong Xue; J Tze-Fei Wong; Luana M Galver; Jian-Bing Fan; Kevin Gunderson; Sarah S Murray; Arnold R Oliphant; Mark S Chee; Alexandre Montpetit; Fanny Chagnon; Vincent Ferretti; Martin Leboeuf; Jean-François Olivier; Michael S Phillips; Stéphanie Roumy; Clémentine Sallée; Andrei Verner; Thomas J Hudson; Pui-Yan Kwok; Dongmei Cai; Daniel C Koboldt; Raymond D Miller; Ludmila Pawlikowska; Patricia Taillon-Miller; Ming Xiao; Lap-Chee Tsui; William Mak; You Qiang Song; Paul K H Tam; Yusuke Nakamura; Takahisa Kawaguchi; Takuya Kitamoto; Takashi Morizono; Atsushi Nagashima; Yozo Ohnishi; Akihiro Sekine; Toshihiro Tanaka; Tatsuhiko Tsunoda; Panos Deloukas; Christine P Bird; Marcos Delgado; Emmanouil T Dermitzakis; Rhian Gwilliam; Sarah Hunt; Jonathan Morrison; Don Powell; Barbara E Stranger; Pamela Whittaker; David R Bentley; Mark J Daly; Paul I W de Bakker; Jeff Barrett; Yves R Chretien; Julian Maller; Steve McCarroll; Nick Patterson; Itsik Pe'er; Alkes Price; Shaun Purcell; Daniel J Richter; Pardis Sabeti; Richa Saxena; Stephen F Schaffner; Pak C Sham; Patrick Varilly; David Altshuler; Lincoln D Stein; Lalitha Krishnan; Albert Vernon Smith; Marcela K Tello-Ruiz; Gudmundur A Thorisson; Aravinda Chakravarti; Peter E Chen; David J Cutler; Carl S Kashuk; Shin Lin; Gonçalo R Abecasis; Weihua Guan; Yun Li; Heather M Munro; Zhaohui Steve Qin; Daryl J Thomas; Gilean McVean; Adam Auton; Leonardo Bottolo; Niall Cardin; Susana Eyheramendy; Colin Freeman; Jonathan Marchini; Simon Myers; Chris Spencer; Matthew Stephens; Peter Donnelly; Lon R Cardon; Geraldine Clarke; David M Evans; Andrew P Morris; Bruce S Weir; Tatsuhiko Tsunoda; James C Mullikin; Stephen T Sherry; Michael Feolo; Andrew Skol; Houcan Zhang; Changqing Zeng; Hui Zhao; Ichiro Matsuda; Yoshimitsu Fukushima; Darryl R Macer; Eiko Suda; Charles N Rotimi; Clement A Adebamowo; Ike Ajayi; Toyin Aniagwu; Patricia A Marshall; Chibuzor Nkwodimmah; Charmaine D M Royal; Mark F Leppert; Missy Dixon; Andy Peiffer; Renzong Qiu; Alastair Kent; Kazuto Kato; Norio Niikawa; Isaac F Adewole; Bartha M Knoppers; Morris W Foster; Ellen Wright Clayton; Jessica Watkin; Richard A Gibbs; John W Belmont; Donna Muzny; Lynne Nazareth; Erica Sodergren; George M Weinstock; David A Wheeler; Imtaz Yakub; Stacey B Gabriel; Robert C Onofrio; Daniel J Richter; Liuda Ziaugra; Bruce W Birren; Mark J Daly; David Altshuler; Richard K Wilson; Lucinda L Fulton; Jane Rogers; John Burton; Nigel P Carter; Christopher M Clee; Mark Griffiths; Matthew C Jones; Kirsten McLay; Robert W Plumb; Mark T Ross; Sarah K Sims; David L Willey; Zhu Chen; Hua Han; Le Kang; Martin Godbout; John C Wallenburg; Paul L'Archevêque; Guy Bellemare; Koji Saeki; Hongguang Wang; Daochang An; Hongbo Fu; Qing Li; Zhen Wang; Renwu Wang; Arthur L Holden; Lisa D Brooks; Jean E McEwen; Mark S Guyer; Vivian Ota Wang; Jane L Peterson; Michael Shi; Jack Spiegel; Lawrence M Sung; Lynn F Zacharia; Francis S Collins; Karen Kennedy; Ruth Jamieson; John Stewart
Journal:  Nature       Date:  2007-10-18       Impact factor: 49.962

9.  Are molecular haplotypes worth the time and expense? A cost-effective method for applying molecular haplotypes.

Authors:  Mark A Levenstien; Jürg Ott; Derek Gordon
Journal:  PLoS Genet       Date:  2006-06-28       Impact factor: 5.917

10.  Enhancing the efficiency of a PCR using gold nanoparticles.

Authors:  Min Li; Yu-Cheng Lin; Chao-Chin Wu; Hsiao-Sheng Liu
Journal:  Nucleic Acids Res       Date:  2005-11-27       Impact factor: 16.971
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  14 in total

1.  CdTe quantum dots enhance feasibility of EvaGreen-based real-time PCR with decent amplification fidelity.

Authors:  Fuming Sang; Zhizhou Zhang; Zhong Xu; Xiaolei Ju; Hongyuan Wang; Shuanghua Zhang; Changlu Guo
Journal:  Mol Biotechnol       Date:  2013-07       Impact factor: 2.695

Review 2.  Chemical basis of interactions between engineered nanoparticles and biological systems.

Authors:  Qingxin Mu; Guibin Jiang; Lingxin Chen; Hongyu Zhou; Denis Fourches; Alexander Tropsha; Bing Yan
Journal:  Chem Rev       Date:  2014-06-13       Impact factor: 60.622

3.  Akt signaling-associated metabolic effects of dietary gold nanoparticles in Drosophila.

Authors:  Bin Wang; Nan Chen; Yingliang Wei; Jiang Li; Li Sun; Jiarui Wu; Qing Huang; Chang Liu; Chunhai Fan; Haiyun Song
Journal:  Sci Rep       Date:  2012-08-07       Impact factor: 4.379

4.  Quantitative investigation of the poly-adenine DNA dissociation from the surface of gold nanoparticles.

Authors:  Weiwen Lu; Lihua Wang; Jiang Li; Yun Zhao; Ziang Zhou; Jiye Shi; Xiaolei Zuo; Dun Pan
Journal:  Sci Rep       Date:  2015-05-14       Impact factor: 4.379

5.  DNA origami-based shape IDs for single-molecule nanomechanical genotyping.

Authors:  Honglu Zhang; Jie Chao; Dun Pan; Huajie Liu; Yu Qiang; Ke Liu; Chengjun Cui; Jianhua Chen; Qing Huang; Jun Hu; Lianhui Wang; Wei Huang; Yongyong Shi; Chunhai Fan
Journal:  Nat Commun       Date:  2017-04-06       Impact factor: 14.919

6.  Taqman-MGB nanoPCR for Highly Specific Detection of Single-Base Mutations.

Authors:  Zhenrui Xue; Minli You; Ping Peng; Haoyang Tong; Wanghong He; Ang Li; Ping Mao; Ting Xu; Feng Xu; Chunyan Yao
Journal:  Int J Nanomedicine       Date:  2021-05-28

7.  Avatar DNA nanohybrid system in chip-on-a-phone.

Authors:  Dae-Hwan Park; Chang Jo Han; Yong-Gun Shul; Jin-Ho Choy
Journal:  Sci Rep       Date:  2014-05-14       Impact factor: 4.379

8.  Recent Developments in Miniaturized PCR-Microchips, Microarrays and Microdroplets.

Authors:  Larry J Kricka; Eleanor S Pollak; Paolo Fortina
Journal:  EJIFCC       Date:  2012-10-12

9.  Development of gold nanoparticles biosensor for ultrasensitive diagnosis of foot and mouth disease virus.

Authors:  Mervat E Hamdy; Michele Del Carlo; Hussein A Hussein; Taher A Salah; Ayman H El-Deeb; Mohamed M Emara; Guilia Pezzoni; Dario Compagnone
Journal:  J Nanobiotechnology       Date:  2018-05-11       Impact factor: 10.435

10.  Effects of graphene oxide on PCR amplification for microbial community survey.

Authors:  Shuzhen Li; Zhujun Wang; Yuanyuan Wang; Maoyong Song; Guangxin Lu; Ning Dang; Huaqun Yin; Yuanyuan Qu; Ye Deng
Journal:  BMC Microbiol       Date:  2020-09-11       Impact factor: 3.605
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