Literature DB >> 21890475

Recombination gives a new insight in the effective population size and the history of the old world human populations.

Marta Melé, Asif Javed, Marc Pybus, Pierre Zalloua, Marc Haber, David Comas, Mihai G Netea, Oleg Balanovsky, Elena Balanovska, Li Jin, Yajun Yang, R M Pitchappan, G Arunkumar, Laxmi Parida, Francesc Calafell, Jaume Bertranpetit.   

Abstract

The information left by recombination in our genomes can be used to make inferences on our recent evolutionary history. Specifically, the number of past recombination events in a population sample is a function of its effective population size (Ne). We have applied a method, Identifying Recombination in Sequences (IRiS), to detect specific past recombination events in 30 Old World populations to infer their Ne. We have found that sub-Saharan African populations have an Ne that is approximately four times greater than those of non-African populations and that outside of Africa, South Asian populations had the largest Ne. We also observe that the patterns of recombinational diversity of these populations correlate with distance out of Africa if that distance is measured along a path crossing South Arabia. No such correlation is found through a Sinai route, suggesting that anatomically modern humans first left Africa through the Bab-el-Mandeb strait rather than through present Egypt.

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Year:  2011        PMID: 21890475     DOI: 10.1093/molbev/msr213

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  12 in total

1.  Evidence for a Common Origin of Blacksmiths and Cultivators in the Ethiopian Ari within the Last 4500 Years: Lessons for Clustering-Based Inference.

Authors:  Lucy van Dorp; David Balding; Simon Myers; Luca Pagani; Chris Tyler-Smith; Endashaw Bekele; Ayele Tarekegn; Mark G Thomas; Neil Bradman; Garrett Hellenthal
Journal:  PLoS Genet       Date:  2015-08-20       Impact factor: 5.917

2.  Unconstrained cranial evolution in Neandertals and modern humans compared to common chimpanzees.

Authors:  Timothy D Weaver; Chris B Stringer
Journal:  Proc Biol Sci       Date:  2015-10-22       Impact factor: 5.349

3.  Coalescent-based method for learning parameters of admixture events from large-scale genetic variation data.

Authors:  Ming-Chi Tsai; Guy Blelloch; R Ravi; Russell Schwartz
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2013 Sep-Oct       Impact factor: 3.710

Review 4.  Pangaea and the Out-of-Africa Model of Varicella-Zoster Virus Evolution and Phylogeography.

Authors:  Charles Grose
Journal:  J Virol       Date:  2012-07-03       Impact factor: 5.103

5.  Neutral genomic regions refine models of recent rapid human population growth.

Authors:  Elodie Gazave; Li Ma; Diana Chang; Alex Coventry; Feng Gao; Donna Muzny; Eric Boerwinkle; Richard A Gibbs; Charles F Sing; Andrew G Clark; Alon Keinan
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-30       Impact factor: 11.205

6.  The Nubian Complex of Dhofar, Oman: an African middle stone age industry in Southern Arabia.

Authors:  Jeffrey I Rose; Vitaly I Usik; Anthony E Marks; Yamandu H Hilbert; Christopher S Galletti; Ash Parton; Jean Marie Geiling; Viktor Cerný; Mike W Morley; Richard G Roberts
Journal:  PLoS One       Date:  2011-11-30       Impact factor: 3.240

7.  Carriers of Mitochondrial DNA Macrohaplogroup N Lineages Reached Australia around 50,000 Years Ago following a Northern Asian Route.

Authors:  Rosa Fregel; Vicente Cabrera; Jose M Larruga; Khaled K Abu-Amero; Ana M González
Journal:  PLoS One       Date:  2015-06-08       Impact factor: 3.240

8.  Spatial and temporal simulation of human evolution. Methods, frameworks and applications.

Authors:  Macarena Benguigui; Miguel Arenas
Journal:  Curr Genomics       Date:  2014-08       Impact factor: 2.236

9.  Selective constraint, background selection, and mutation accumulation variability within and between human populations.

Authors:  Alan Hodgkinson; Ferran Casals; Youssef Idaghdour; Jean-Christophe Grenier; Ryan D Hernandez; Philip Awadalla
Journal:  BMC Genomics       Date:  2013-07-23       Impact factor: 3.969

10.  Secondary structure impacts patterns of selection in human lncRNAs.

Authors:  Cinta Pegueroles; Toni Gabaldón
Journal:  BMC Biol       Date:  2016-07-25       Impact factor: 7.431

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