Literature DB >> 21887654

A rapid PCR-based approach for molecular identification of filamentous fungi.

Yuanyuan Chen1, Bernard A Prior, Guiyang Shi, Zhengxiang Wang.   

Abstract

In this study, a novel rapid and efficient DNA extraction method based on alkaline lysis, which can deal with a large number of filamentous fungal isolates in the same batch, was established. The filamentous fungal genomic DNA required only 20 min to prepare and can be directly used as a template for PCR amplification. The amplified internal transcribed spacer regions were easy to identify by analysis. The extracted DNA also can be used to amplify other protein-coding genes for fungal identification. This method can be used for rapid systematic identification of filamentous fungal isolates.

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Year:  2011        PMID: 21887654     DOI: 10.1007/s12275-011-0525-3

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  16 in total

1.  A rapid and efficient assay for extracting DNA from fungi.

Authors:  D W Griffin; C A Kellogg; K K Peak; E A Shinn
Journal:  Lett Appl Microbiol       Date:  2002       Impact factor: 2.858

2.  A rapid DNA extraction method for PCR identification of fungal indoor air contaminants.

Authors:  Timothy R Dean; Doris Betancourt; Marc Y Menetrez
Journal:  J Microbiol Methods       Date:  2004-03       Impact factor: 2.363

3.  Alkaline polyethylene glycol-based method for direct PCR from bacteria, eukaryotic tissue samples, and whole blood.

Authors:  Piotr Chomczynski; Michal Rymaszewski
Journal:  Biotechniques       Date:  2006-04       Impact factor: 1.993

4.  An assessment of the efficiency of fungal DNA extraction methods for maximizing the detection of medically important fungi using PCR.

Authors:  A Karakousis; L Tan; D Ellis; H Alexiou; P J Wormald
Journal:  J Microbiol Methods       Date:  2005-08-15       Impact factor: 2.363

Review 5.  Research Coordination Networks: a phylogeny for kingdom Fungi (Deep Hypha).

Authors:  Meredith Blackwell; David S Hibbett; John W Taylor; Joseph W Spatafora
Journal:  Mycologia       Date:  2006 Nov-Dec       Impact factor: 2.696

6.  Comparison of different methods for extraction of DNA of fungal pathogens from cultures and blood.

Authors:  J Löffler; H Hebart; U Schumacher; H Reitze; H Einsele
Journal:  J Clin Microbiol       Date:  1997-12       Impact factor: 5.948

7.  Isolation of genomic DNAs from plants, fungi and bacteria using benzyl chloride.

Authors:  H Zhu; F Qu; L H Zhu
Journal:  Nucleic Acids Res       Date:  1993-11-11       Impact factor: 16.971

8.  Rapid and efficient protocol for DNA extraction and molecular identification of the basidiomycete Crinipellis perniciosa.

Authors:  S C O Melo; C Pungartnik; J C M Cascardo; M Brendel
Journal:  Genet Mol Res       Date:  2006-12-14

9.  A Beauveria phylogeny inferred from nuclear ITS and EF1-alpha sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs.

Authors:  Stephen A Rehner; Ellen Buckley
Journal:  Mycologia       Date:  2005 Jan-Feb       Impact factor: 2.696

10.  A rapid method for the isolation of genomic DNA from Aspergillus fumigatus.

Authors:  N Bir; A Paliwal; K Muralidhar; P Reddy; P U Sarma
Journal:  Prep Biochem       Date:  1995-11
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  1 in total

1.  Preliminary studies of new strains of Trametes sp. from Argentina for laccase production ability.

Authors:  María Isabel Fonseca; Marcos Raúl Tejerina; Silvana Soledad Sawostjanik-Afanasiuk; Ernesto Martin Giorgio; Mónica Lucrecia Barchuk; Pedro Darío Zapata; Laura Lidia Villalba
Journal:  Braz J Microbiol       Date:  2016-03-02       Impact factor: 2.476

  1 in total

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