Literature DB >> 21873252

Random partitioning of molecules at cell division.

Dann Huh1, Johan Paulsson.   

Abstract

Many RNAs, proteins, and organelles are present in such low numbers per cell that random segregation of individual copies causes large "partitioning errors" at cell division. Even symmetrically dividing cells can then by chance produce daughters with very different composition. The size of the errors depends on the segregation mechanism: Control systems can reduce low-abundance errors, but the segregation process can also be subject to upstream sources of randomness or spatial heterogeneities that create large errors despite high abundances. Here we mathematically demonstrate how partitioning errors arise for different types of segregation mechanisms and how errors can be greatly increased by upstream heterogeneity but remarkably hard to avoid through controlled partitioning. We also show that seemingly straightforward experiments cannot be straightforwardly interpreted because very different mechanisms produce identical fits and present an approach to deal with this problem by adding binomial counting noise and testing for convexity or concavity in the partitioning error as a function of the binomial thinning parameter. The results lay a conceptual groundwork for more effective studies of heterogeneity among growing and dividing cells, whether in microbes or in differentiating tissues.

Entities:  

Mesh:

Year:  2011        PMID: 21873252      PMCID: PMC3169110          DOI: 10.1073/pnas.1013171108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  48 in total

1.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

2.  Intrinsic and extrinsic contributions to stochasticity in gene expression.

Authors:  Peter S Swain; Michael B Elowitz; Eric D Siggia
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-17       Impact factor: 11.205

3.  Control of stochasticity in eukaryotic gene expression.

Authors:  Jonathan M Raser; Erin K O'Shea
Journal:  Science       Date:  2004-05-27       Impact factor: 47.728

4.  Intracellular transport dynamics of endosomes containing DNA polyplexes along the microtubule network.

Authors:  Rajan P Kulkarni; Kenneth Castelino; Arun Majumdar; Scott E Fraser
Journal:  Biophys J       Date:  2006-01-06       Impact factor: 4.033

5.  Stochastic protein expression in individual cells at the single molecule level.

Authors:  Long Cai; Nir Friedman; X Sunney Xie
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

6.  A model for the statistical fluctuations of protein numbers in a microbial population.

Authors:  O G Berg
Journal:  J Theor Biol       Date:  1978-04-20       Impact factor: 2.691

7.  Ultrastructure of scorpion spermatozoa with atypical axonemes.

Authors:  R D Hood; O F Watson; T R Deason; C L Benton
Journal:  Cytobios       Date:  1972 May-Jun

8.  On the precision and accuracy achieved by Escherichia coli cells at fission about their middle.

Authors:  F J Trueba
Journal:  Arch Microbiol       Date:  1982-02       Impact factor: 2.552

9.  Stochastic partitioning of chloroplasts at cell division in the alga Olisthodiscus, and compensating control of chloroplast replication.

Authors:  A S Hennis; C W Birky
Journal:  J Cell Sci       Date:  1984-08       Impact factor: 5.285

10.  An ordered inheritance strategy for the Golgi apparatus: visualization of mitotic disassembly reveals a role for the mitotic spindle.

Authors:  D T Shima; N Cabrera-Poch; R Pepperkok; G Warren
Journal:  J Cell Biol       Date:  1998-05-18       Impact factor: 10.539

View more
  78 in total

1.  A noisy linear map underlies oscillations in cell size and gene expression in bacteria.

Authors:  Yu Tanouchi; Anand Pai; Heungwon Park; Shuqiang Huang; Rumen Stamatov; Nicolas E Buchler; Lingchong You
Journal:  Nature       Date:  2015-06-03       Impact factor: 49.962

2.  Transient changes in intercellular protein variability identify sources of noise in gene expression.

Authors:  Abhyudai Singh
Journal:  Biophys J       Date:  2014-11-04       Impact factor: 4.033

3.  Scaling laws governing stochastic growth and division of single bacterial cells.

Authors:  Srividya Iyer-Biswas; Charles S Wright; Jonathan T Henry; Klevin Lo; Stanislav Burov; Yihan Lin; Gavin E Crooks; Sean Crosson; Aaron R Dinner; Norbert F Scherer
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

4.  Lineage correlations of single cell division time as a probe of cell-cycle dynamics.

Authors:  Oded Sandler; Sivan Pearl Mizrahi; Noga Weiss; Oded Agam; Itamar Simon; Nathalie Q Balaban
Journal:  Nature       Date:  2015-03-11       Impact factor: 49.962

5.  Effects of cell cycle variability on lineage and population measurements of messenger RNA abundance.

Authors:  Ruben Perez-Carrasco; Casper Beentjes; Ramon Grima
Journal:  J R Soc Interface       Date:  2020-07-08       Impact factor: 4.118

Review 6.  Organelles - understanding noise and heterogeneity in cell biology at an intermediate scale.

Authors:  Amy Y Chang; Wallace F Marshall
Journal:  J Cell Sci       Date:  2017-02-09       Impact factor: 5.285

7.  Spatial ordering of chromosomes enhances the fidelity of chromosome partitioning in cyanobacteria.

Authors:  Isha H Jain; Vikram Vijayan; Erin K O'Shea
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-06       Impact factor: 11.205

8.  Single-molecule DNA repair in live bacteria.

Authors:  Stephan Uphoff; Rodrigo Reyes-Lamothe; Federico Garza de Leon; David J Sherratt; Achillefs N Kapanidis
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-29       Impact factor: 11.205

9.  Association of mitochondria with microtubules inhibits mitochondrial fission by precluding assembly of the fission protein Dnm1.

Authors:  Kritika Mehta; Leeba Ann Chacko; Manjyot Kaur Chug; Siddharth Jhunjhunwala; Vaishnavi Ananthanarayanan
Journal:  J Biol Chem       Date:  2019-01-02       Impact factor: 5.157

10.  Stochastic Kinetics of Nascent RNA.

Authors:  Heng Xu; Samuel O Skinner; Anna Marie Sokac; Ido Golding
Journal:  Phys Rev Lett       Date:  2016-09-13       Impact factor: 9.161

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.