Literature DB >> 21870808

Spectroscopic and computational studies of α-keto acid binding to Dke1: understanding the role of the facial triad and the reactivity of β-diketones.

Adrienne R Diebold1, Grit D Straganz, Edward I Solomon.   

Abstract

The O(2) an class="Chemical">ctivating mononuclear nonheme iron enzymes generally have a common facial triad (two histidine and one carboxylate (Asp or Glu) residue) ligating Fe(II) at the active site. Exceptions to this motif have recently been identified in nonheme enzymes, including a 3His triad in the diketone cleaving dioxygenase Dke1. This enzyme is used to explore the role of the facial triad in directing reactivity. A combination of spectroscopic studies (UV-vis absorption, MCD, and resonance Raman) and DFT calculations is used to define the nature of the binding of the α-keto acid, 4-hydroxyphenlpyruvate (HPP), to the active site in Dke1 and the origin of the atypical cleavage (C2-C3 instead of C1-C2) pattern exhibited by this enzyme in the reaction of α-keto acids with dioxygen. The reduced charge of the 3His triad induces α-keto acid binding as the enolate dianion, rather than the keto monoanion, found for α-keto acid binding to the 2His/1 carboxylate facial triad enzymes. The mechanistic insight from the reactivity of Dke1 with the α-keto acid substrate is then extended to understand the reaction mechanism of this enzyme with its native substrate, acac. This study defines a key role for the 2His/1 carboxylate facial triad in α-keto acid-dependent mononuclear nonheme iron enzymes in stabilizing the bound α-keto acid as a monoanion for its decarboxylation to provide the two additional electrons required for O(2) activation.

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Year:  2011        PMID: 21870808      PMCID: PMC3191879          DOI: 10.1021/ja203005j

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  26 in total

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Authors:  G Schaftenaar; J H Noordik
Journal:  J Comput Aided Mol Des       Date:  2000-02       Impact factor: 3.686

2.  Geometric and electronic structure/function correlations in non-heme iron enzymes.

Authors:  E I Solomon; T C Brunold; M I Davis; J N Kemsley; S K Lee; N Lehnert; F Neese; A J Skulan; Y S Yang; J Zhou
Journal:  Chem Rev       Date:  2000-01-12       Impact factor: 60.622

3.  Enzymatic generation of the antimetabolite gamma,gamma-dichloroaminobutyrate by NRPS and mononuclear iron halogenase action in a streptomycete.

Authors:  Masashi Ueki; Danica P Galonić; Frédéric H Vaillancourt; Sylvie Garneau-Tsodikova; Ellen Yeh; David A Vosburg; Frank C Schroeder; Hiroyuki Osada; Christopher T Walsh
Journal:  Chem Biol       Date:  2006-11

Review 4.  The 2-His-1-carboxylate facial triad--an emerging structural motif in mononuclear non-heme iron(II) enzymes.

Authors:  E L Hegg; L Que
Journal:  Eur J Biochem       Date:  1997-12-15

5.  Reaction coordinate analysis for beta-diketone cleavage by the non-heme Fe2+-dependent dioxygenase Dke1.

Authors:  Grit D Straganz; Bernd Nidetzky
Journal:  J Am Chem Soc       Date:  2005-09-07       Impact factor: 15.419

6.  Accumulation of multiple intermediates in the catalytic cycle of (4-hydroxyphenyl)pyruvate dioxygenase from Streptomyces avermitilis.

Authors:  Kayunta Johnson-Winters; Vincent M Purpero; Michael Kavana; Graham R Moran
Journal:  Biochemistry       Date:  2005-05-17       Impact factor: 3.162

7.  Exploring the catalytic potential of the 3-His mononuclear nonheme Fe(II) center: discovery and characterization of an unprecedented maltol cleavage activity.

Authors:  Cristiana M L Di Giuro; Daniela Buongiorno; Erich Leitner; Grit D Straganz
Journal:  J Inorg Biochem       Date:  2011-06-06       Impact factor: 4.155

8.  Kinetic and CD/MCD spectroscopic studies of the atypical, three-His-ligated, non-heme Fe2+ center in diketone dioxygenase: the role of hydrophilic outer shell residues in catalysis.

Authors:  Grit D Straganz; Adrienne R Diebold; Sigrid Egger; Bernd Nidetzky; Edward I Solomon
Journal:  Biochemistry       Date:  2010-02-09       Impact factor: 3.162

9.  Electronic substituent effects on the cleavage specificity of a non-heme Fe(2+)-dependent beta-diketone dioxygenase and their mechanistic implications.

Authors:  Grit D Straganz; Hannes Hofer; Walter Steiner; Bernd Nidetzky
Journal:  J Am Chem Soc       Date:  2004-10-06       Impact factor: 15.419

10.  Iron-catalyzed C2-C3 bond cleavage of phenylpyruvate with O2: insight into aliphatic C-C bond-cleaving dioxygenases.

Authors:  Tapan Kanti Paine; Jason England; Lawrence Que
Journal:  Chemistry       Date:  2007       Impact factor: 5.236

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  10 in total

Review 1.  Mono- and binuclear non-heme iron chemistry from a theoretical perspective.

Authors:  Tibor András Rokob; Jakub Chalupský; Daniel Bím; Prokopis C Andrikopoulos; Martin Srnec; Lubomír Rulíšek
Journal:  J Biol Inorg Chem       Date:  2016-05-26       Impact factor: 3.358

2.  N3-Ligated nickel(ii) diketonate complexes: synthesis, characterization and evaluation of O2 reactivity.

Authors:  Josiah G D Elsberg; Austin Peterson; Amy L Fuller; Lisa M Berreau
Journal:  Dalton Trans       Date:  2020-06-09       Impact factor: 4.390

3.  Fe(II) complexes that mimic the active site structure of acetylacetone dioxygenase: O2 and NO reactivity.

Authors:  Heaweon Park; Michael M Bittner; Jacob S Baus; Sergey V Lindeman; Adam T Fiedler
Journal:  Inorg Chem       Date:  2012-09-13       Impact factor: 5.165

4.  Dke1--structure, dynamics, and function: a theoretical and experimental study elucidating the role of the binding site shape and the hydrogen-bonding network in catalysis.

Authors:  Hrvoje Brkić; Daniela Buongiorno; Michael Ramek; Grit Straganz; Sanja Tomić
Journal:  J Biol Inorg Chem       Date:  2012-04-20       Impact factor: 3.358

Review 5.  Go it alone: four-electron oxidations by mononuclear non-heme iron enzymes.

Authors:  Spencer C Peck; Wilfred A van der Donk
Journal:  J Biol Inorg Chem       Date:  2016-10-25       Impact factor: 3.358

Review 6.  Structure and function of atypically coordinated enzymatic mononuclear non-heme-Fe(II) centers.

Authors:  Daniela Buongiorno; Grit D Straganz
Journal:  Coord Chem Rev       Date:  2013-01-15       Impact factor: 22.315

7.  Revisiting Reduction of CO2 to Oxalate with First-Row Transition Metals: Irreproducibility, Ambiguous Analysis, and Conflicting Reactivity.

Authors:  Maximilian Marx; Holm Frauendorf; Anke Spannenberg; Helfried Neumann; Matthias Beller
Journal:  JACS Au       Date:  2022-02-14

8.  Dioxygen reactivity of biomimetic Fe(II) complexes with noninnocent catecholate, o-aminophenolate, and o-phenylenediamine ligands.

Authors:  Michael M Bittner; Sergey V Lindeman; Codrina V Popescu; Adam T Fiedler
Journal:  Inorg Chem       Date:  2014-04-03       Impact factor: 5.165

9.  Chiral hydroxylation at the mononuclear nonheme Fe(II) center of 4-(S) hydroxymandelate synthase--a structure-activity relationship analysis.

Authors:  Cristiana M L Di Giuro; Cornelia Konstantinovics; Uwe Rinner; Christina Nowikow; Erich Leitner; Grit D Straganz
Journal:  PLoS One       Date:  2013-07-23       Impact factor: 3.240

10.  An iron-oxygen intermediate formed during the catalytic cycle of cysteine dioxygenase.

Authors:  E P Tchesnokov; A S Faponle; C G Davies; M G Quesne; R Turner; M Fellner; R J Souness; S M Wilbanks; S P de Visser; G N L Jameson
Journal:  Chem Commun (Camb)       Date:  2016-07-07       Impact factor: 6.222

  10 in total

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