Literature DB >> 21865433

Effect of sample storage conditions on culture-independent bacterial community measures in cystic fibrosis sputum specimens.

Jiangchao Zhao, Jun Li, Patrick D Schloss, Linda M Kalikin, Tracy A Raymond, Joseph F Petrosino, Vincent B Young, John J LiPuma.   

Abstract

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Year:  2011        PMID： 21865433      PMCID： PMC3187318          DOI： 10.1128/JCM.01189-11

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


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  11 in total

1.  Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation.

Authors:  Les Dethlefsen; David A Relman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-16       Impact factor: 11.205

2.  Microbial diversity in the sputum of a cystic fibrosis patient studied with 16S rDNA pyrosequencing.

Authors:  F Armougom; F Bittar; N Stremler; J-M Rolain; C Robert; J-C Dubus; J Sarles; D Raoult; B La Scola
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2009-05-16       Impact factor: 3.267

3.  Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosis.

Authors:  J Kirk Harris; Mary Ann De Groote; Scott D Sagel; Edith T Zemanick; Robert Kapsner; Churee Penvari; Heidi Kaess; Robin R Deterding; Frank J Accurso; Norman R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-11       Impact factor: 11.205

4.  Use of 16S rRNA gene profiling by terminal restriction fragment length polymorphism analysis to compare bacterial communities in sputum and mouthwash samples from patients with cystic fibrosis.

Authors:  G B Rogers; M P Carroll; D J Serisier; P M Hockey; G Jones; V Kehagia; G J Connett; K D Bruce
Journal:  J Clin Microbiol       Date:  2006-07       Impact factor: 5.948

5.  Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa.

Authors:  Vanja Klepac-Ceraj; Katherine P Lemon; Thomas R Martin; Martin Allgaier; Steven W Kembel; Alixandra A Knapp; Stephen Lory; Eoin L Brodie; Susan V Lynch; Brendan J M Bohannan; Jessica L Green; Brian A Maurer; Roberto Kolter
Journal:  Environ Microbiol       Date:  2010-02-23       Impact factor: 5.491

6.  characterization of bacterial community diversity in cystic fibrosis lung infections by use of 16s ribosomal DNA terminal restriction fragment length polymorphism profiling.

Authors:  G B Rogers; M P Carroll; D J Serisier; P M Hockey; G Jones; K D Bruce
Journal:  J Clin Microbiol       Date:  2004-11       Impact factor: 5.948

7.  Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis.

Authors:  Adam M Guss; Guus Roeselers; Irene L G Newton; C Robert Young; Vanja Klepac-Ceraj; Stephen Lory; Colleen M Cavanaugh
Journal:  ISME J       Date:  2010-07-15       Impact factor: 10.302

8.  A polymicrobial perspective of pulmonary infections exposes an enigmatic pathogen in cystic fibrosis patients.

Authors:  Christopher D Sibley; Michael D Parkins; Harvey R Rabin; Kangmin Duan; Jens C Norgaard; Michael G Surette
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-23       Impact factor: 11.205

9.  Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients.

Authors:  Michael J Cox; Martin Allgaier; Byron Taylor; Marshall S Baek; Yvonne J Huang; Rebecca A Daly; Ulas Karaoz; Gary L Andersen; Ronald Brown; Kei E Fujimura; Brian Wu; Diem Tran; Jonathan Koff; Mary Ellen Kleinhenz; Dennis Nielson; Eoin L Brodie; Susan V Lynch
Journal:  PLoS One       Date:  2010-06-23       Impact factor: 3.240

10.  Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities.

Authors:  Christopher J van der Gast; Alan W Walker; Franziska A Stressmann; Geraint B Rogers; Paul Scott; Thomas W Daniels; Mary P Carroll; Julian Parkhill; Kenneth D Bruce
Journal:  ISME J       Date:  2010-12-09       Impact factor: 10.302
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  16 in total

1.  Recovery of Gram-negative bacilli in stored endotracheal aspirates.

Authors:  Tarah D Ranke; Paula Strassle; Anthony D Harris; Jingkun Zhu; J Kristie Johnson
Journal:  J Clin Microbiol       Date:  2012-05-30       Impact factor: 5.948

2.  Impact of storage conditions on metabolite profiles of sputum samples from persons with cystic fibrosis.

Authors:  Jiangchao Zhao; Charles R Evans; Lisa A Carmody; John J LiPuma
Journal:  J Cyst Fibros       Date:  2015-02-26       Impact factor: 5.482

3.  Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies.

Authors:  Daryl M Gohl; Pajau Vangay; John Garbe; Allison MacLean; Adam Hauge; Aaron Becker; Trevor J Gould; Jonathan B Clayton; Timothy J Johnson; Ryan Hunter; Dan Knights; Kenneth B Beckman
Journal:  Nat Biotechnol       Date:  2016-07-25       Impact factor: 54.908

Review 4.  How can the cystic fibrosis respiratory microbiome influence our clinical decision-making?

Authors:  Geraint B Rogers; Kenneth D Bruce; Lucas R Hoffman
Journal:  Curr Opin Pulm Med       Date:  2017-11       Impact factor: 3.155

5.  Maintenance tobramycin primarily affects untargeted bacteria in the CF sputum microbiome.

Authors:  Maria T Nelson; Daniel J Wolter; Alexander Eng; Eli J Weiss; Anh T Vo; Mitchell J Brittnacher; Hillary S Hayden; Sumedha Ravishankar; Gilbert Bautista; Anina Ratjen; Marcella Blackledge; Sharon McNamara; Laura Nay; Cheryl Majors; Samuel I Miller; Elhanan Borenstein; Richard H Simon; John J LiPuma; Luke R Hoffman
Journal:  Thorax       Date:  2020-07-06       Impact factor: 9.139

6.  Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples.

Authors:  Dana Willner; Joshua Daly; David Whiley; Keith Grimwood; Claire E Wainwright; Philip Hugenholtz
Journal:  PLoS One       Date:  2012-04-13       Impact factor: 3.240

7.  Measures of Cystic Fibrosis Airway Microbiota during Periods of Clinical Stability.

Authors:  Lindsay J Caverly; Junnan Lu; Lisa A Carmody; Linda M Kalikin; Kerby Shedden; Kristopher Opron; Michelle Azar; Shannon Cahalan; Bridget Foster; Donald R VanDevanter; Richard H Simon; John J LiPuma
Journal:  Ann Am Thorac Soc       Date:  2019-12

8.  Time between collection and storage significantly influences bacterial sequence composition in sputum samples from cystic fibrosis respiratory infections.

Authors:  Leah Cuthbertson; Geraint B Rogers; Alan W Walker; Anna Oliver; Tarana Hafiz; Lucas R Hoffman; Mary P Carroll; Julian Parkhill; Kenneth D Bruce; Christopher J van der Gast
Journal:  J Clin Microbiol       Date:  2014-06-11       Impact factor: 5.948

9.  Collection media and delayed freezing effects on microbial composition of human stool.

Authors:  Roberto Flores; Jianxin Shi; Guoqin Yu; Bing Ma; Jacques Ravel; James J Goedert; Rashmi Sinha
Journal:  Microbiome       Date:  2015-08-12       Impact factor: 14.650

10.  16S rRNA gene pyrosequencing of reference and clinical samples and investigation of the temperature stability of microbiome profiles.

Authors:  Jun Hang; Valmik Desai; Nela Zavaljevski; Yu Yang; Xiaoxu Lin; Ravi Vijaya Satya; Luis J Martinez; Jason M Blaylock; Richard G Jarman; Stephen J Thomas; Robert A Kuschner
Journal:  Microbiome       Date:  2014-09-16       Impact factor: 14.650
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