Literature DB >> 21865350

Delineation of key regulatory elements identifies points of vulnerability in the mitogen-activated signaling network.

Noor Jailkhani1, Srikanth Ravichandran, Shubhada R Hegde, Zaved Siddiqui, Shekhar C Mande, Kanury V S Rao.   

Abstract

Drug development efforts against cancer are often hampered by the complex properties of signaling networks. Here we combined the results of an RNAi screen targeting the cellular signaling machinery, with graph theoretical analysis to extract the core modules that process both mitogenic and oncogenic signals to drive cell cycle progression. These modules encapsulated mechanisms for coordinating seamless transition of cells through the individual cell cycle stages and, importantly, were functionally conserved across different cancer cell types. Further analysis also enabled extraction of the core signaling axes that progressively guide commitment of cells to the division cycle. Importantly, pharmacological targeting of the least redundant nodes in these axes yielded a synergistic disruption of the cell cycle in a tissue-type-independent manner. Thus, the core elements that regulate temporally distinct stages of the cell cycle provide attractive targets for the development of multi-module-based chemotherapeutic strategies.

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Year:  2011        PMID: 21865350      PMCID: PMC3227097          DOI: 10.1101/gr.116145.110

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  54 in total

1.  KEGG: kyoto encyclopedia of genes and genomes.

Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Measures of degeneracy and redundancy in biological networks.

Authors:  G Tononi; O Sporns; G M Edelman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

Review 3.  Degeneracy and complexity in biological systems.

Authors:  G M Edelman; J A Gally
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-06       Impact factor: 11.205

Review 4.  Network biology: understanding the cell's functional organization.

Authors:  Albert-László Barabási; Zoltán N Oltvai
Journal:  Nat Rev Genet       Date:  2004-02       Impact factor: 53.242

5.  Prediction of conditional gene essentiality through graph theoretical analysis of genome-wide functional linkages.

Authors:  P Manimaran; Shubhada R Hegde; Shekhar C Mande
Journal:  Mol Biosyst       Date:  2009-08-07

6.  c-Abl acetylation by histone acetyltransferases regulates its nuclear-cytoplasmic localization.

Authors:  Maria Giovanna di Bari; Laura Ciuffini; Michele Mingardi; Roberto Testi; Silvia Soddu; Daniela Barilà
Journal:  EMBO Rep       Date:  2006-04-28       Impact factor: 8.807

7.  Generalized equations for the analysis of inhibitions of Michaelis-Menten and higher-order kinetic systems with two or more mutually exclusive and nonexclusive inhibitors.

Authors:  T C Chou; P Talalay
Journal:  Eur J Biochem       Date:  1981-03-16

Review 8.  Host cell factors in HIV replication: meta-analysis of genome-wide studies.

Authors:  Frederic D Bushman; Nirav Malani; Jason Fernandes; Iván D'Orso; Gerard Cagney; Tracy L Diamond; Honglin Zhou; Daria J Hazuda; Amy S Espeseth; Renate König; Sourav Bandyopadhyay; Trey Ideker; Stephen P Goff; Nevan J Krogan; Alan D Frankel; John A T Young; Sumit K Chanda
Journal:  PLoS Pathog       Date:  2009-05-29       Impact factor: 6.823

9.  Reactome knowledgebase of human biological pathways and processes.

Authors:  Lisa Matthews; Gopal Gopinath; Marc Gillespie; Michael Caudy; David Croft; Bernard de Bono; Phani Garapati; Jill Hemish; Henning Hermjakob; Bijay Jassal; Alex Kanapin; Suzanna Lewis; Shahana Mahajan; Bruce May; Esther Schmidt; Imre Vastrik; Guanming Wu; Ewan Birney; Lincoln Stein; Peter D'Eustachio
Journal:  Nucleic Acids Res       Date:  2008-11-03       Impact factor: 16.971

10.  PID: the Pathway Interaction Database.

Authors:  Carl F Schaefer; Kira Anthony; Shiva Krupa; Jeffrey Buchoff; Matthew Day; Timo Hannay; Kenneth H Buetow
Journal:  Nucleic Acids Res       Date:  2008-10-02       Impact factor: 16.971

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  3 in total

1.  Defining the Akt1 interactome and its role in regulating the cell cycle.

Authors:  Shweta Duggal; Noor Jailkhani; Mukul Kumar Midha; Namita Agrawal; Kanury V S Rao; Ajay Kumar
Journal:  Sci Rep       Date:  2018-01-22       Impact factor: 4.379

2.  A cytokine protein-protein interaction network for identifying key molecules in rheumatoid arthritis.

Authors:  Venugopal Panga; Srivatsan Raghunathan
Journal:  PLoS One       Date:  2018-06-21       Impact factor: 3.240

3.  Concurrent interactome and metabolome analysis reveals role of AKT1 in central carbon metabolism.

Authors:  Nutan Gupta; Shweta Duggal; Ajay Kumar; Najmuddin Mohd Saquib; Kanury V S Rao
Journal:  BMC Res Notes       Date:  2018-05-02
  3 in total

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