Literature DB >> 21863492

The automated cell: compound and environment screening system (ACCESS) for chemogenomic screening.

Michael Proctor1, Malene L Urbanus, Eula L Fung, Daniel F Jaramillo, Ronald W Davis, Corey Nislow, Guri Giaever.   

Abstract

The automated cell, compound and environment screening system (ACCESS) was developed as an automated platform for chemogenomic research. In the yeast Saccharomyces cerevisiae, a number of genomic screens rely on the modulation of gene dose to determine the mode of action of bioactive compounds or the effects of environmental/compound perturbations. These and other phenotypic experiments have been shown to benefit from high-resolution growth curves and a highly automated controlled environment system that enables a wide range of multi-well assays that can be run over many days without any manual intervention. Furthermore, precise control of drug dosing, timing of drug exposure, and precise timing of cell harvesting at specific generation times are important for optimal results. Some of these benefits include the ability to derive fine distinctions between growth rates of mutant strains (1) and the discovery of novel compounds and drug targets (2). The automation has also enabled large-scale screening projects with over 100,000 unique compounds screened to date including a thousand genome-wide screens (3). The ACCESS system also has a diverse set of software tools to enable users to set up, run, annotate, and evaluate complex screens with minimal training.

Entities:  

Mesh:

Year:  2011        PMID: 21863492     DOI: 10.1007/978-1-61779-173-4_15

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  12 in total

1.  Compound prioritization methods increase rates of chemical probe discovery in model organisms.

Authors:  Iain M Wallace; Malene L Urbanus; Genna M Luciani; Andrew R Burns; Mitchell K L Han; Hao Wang; Kriti Arora; Lawrence E Heisler; Michael Proctor; Robert P St Onge; Terry Roemer; Peter J Roy; Carolyn L Cummins; Gary D Bader; Corey Nislow; Guri Giaever
Journal:  Chem Biol       Date:  2011-10-28

2.  A phenotypic screening platform to identify small molecule modulators of Chlamydomonas reinhardtii growth, motility and photosynthesis.

Authors:  Simon E Alfred; Anuradha Surendra; Chris Le; Ken Lin; Alexander Mok; Iain M Wallace; Michael Proctor; Malene L Urbanus; Guri Giaever; Corey Nislow
Journal:  Genome Biol       Date:  2012-11-18       Impact factor: 13.583

3.  Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system.

Authors:  Leo C K Wan; Daniel Y L Mao; Dante Neculai; Jonathan Strecker; David Chiovitti; Igor Kurinov; Gennadiy Poda; Neroshan Thevakumaran; Fang Yuan; Rachel K Szilard; Elena Lissina; Corey Nislow; Amy A Caudy; Daniel Durocher; Frank Sicheri
Journal:  Nucleic Acids Res       Date:  2013-04-25       Impact factor: 16.971

4.  Genome-wide analysis of intracellular pH reveals quantitative control of cell division rate by pH(c) in Saccharomyces cerevisiae.

Authors:  Rick Orij; Malene L Urbanus; Franco J Vizeacoumar; Guri Giaever; Charles Boone; Corey Nislow; Stanley Brul; Gertien J Smits
Journal:  Genome Biol       Date:  2012-09-10       Impact factor: 13.583

5.  Mitochondrial electron transport is the cellular target of the oncology drug elesclomol.

Authors:  Ronald K Blackman; Kahlin Cheung-Ong; Marinella Gebbia; David A Proia; Suqin He; Jane Kepros; Aurelie Jonneaux; Philippe Marchetti; Jerome Kluza; Patricia E Rao; Yumiko Wada; Guri Giaever; Corey Nislow
Journal:  PLoS One       Date:  2012-01-11       Impact factor: 3.240

6.  Identification of a New Class of Antifungals Targeting the Synthesis of Fungal Sphingolipids.

Authors:  Visesato Mor; Antonella Rella; Amir M Farnoud; Ashutosh Singh; Mansa Munshi; Arielle Bryan; Shamoon Naseem; James B Konopka; Iwao Ojima; Erika Bullesbach; Alan Ashbaugh; Michael J Linke; Melanie Cushion; Margaret Collins; Hari Krishna Ananthula; Larry Sallans; Pankaj B Desai; Nathan P Wiederhold; Annette W Fothergill; William R Kirkpatrick; Thomas Patterson; Lai Hong Wong; Sunita Sinha; Guri Giaever; Corey Nislow; Patrick Flaherty; Xuewen Pan; Gabriele Vargas Cesar; Patricia de Melo Tavares; Susana Frases; Kildare Miranda; Marcio L Rodrigues; Chiara Luberto; Leonardo Nimrichter; Maurizio Del Poeta
Journal:  mBio       Date:  2015-06-23       Impact factor: 7.867

7.  Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila.

Authors:  Malene L Urbanus; Andrew T Quaile; Peter J Stogios; Mariya Morar; Chitong Rao; Rosa Di Leo; Elena Evdokimova; Mandy Lam; Christina Oatway; Marianne E Cuff; Jerzy Osipiuk; Karolina Michalska; Boguslaw P Nocek; Mikko Taipale; Alexei Savchenko; Alexander W Ensminger
Journal:  Mol Syst Biol       Date:  2016-12-16       Impact factor: 11.429

8.  Network dynamics of the yeast methyltransferome.

Authors:  Guri Giaever; Elena Lissina; Corey Nislow
Journal:  Microb Cell       Date:  2019-07-09

9.  An evaluation of high-throughput approaches to QTL mapping in Saccharomyces cerevisiae.

Authors:  Stefan Wilkening; Gen Lin; Emilie S Fritsch; Manu M Tekkedil; Simon Anders; Raquel Kuehn; Michelle Nguyen; Raeka S Aiyar; Michael Proctor; Nikita A Sakhanenko; David J Galas; Julien Gagneur; Adam Deutschbauer; Lars M Steinmetz
Journal:  Genetics       Date:  2013-12-27       Impact factor: 4.562

10.  Broad-spectrum antifungal activities and mechanism of drimane sesquiterpenoids.

Authors:  Edruce Edouarzin; Connor Horn; Anuja Paudyal; Cunli Zhang; Jianyu Lu; Zongbo Tong; Guri Giaever; Corey Nislow; Raja Veerapandian; Duy H Hua; Govindsamy Vediyappan
Journal:  Microb Cell       Date:  2020-03-12
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.