Literature DB >> 21854979

Mechanisms for the inheritance of chromatin states.

Danesh Moazed1.   

Abstract

Studies in eukaryotes ranging from yeast to mammals indicate that specific chromatin structures can be inherited following DNA replication via mechanisms acting in cis. Both the initial establishment of such chromatin structures and their inheritance require sequence-dependent specificity factors and changes in histone posttranslational modifications. Here I propose models for the maintenance of epigenetic information in which DNA silencers or nascent RNA scaffolds act as sensors that work cooperatively with parentally inherited histones to re-establish chromatin states following DNA replication.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21854979      PMCID: PMC3244757          DOI: 10.1016/j.cell.2011.07.013

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  81 in total

1.  Ordered nucleation and spreading of silenced chromatin in Saccharomyces cerevisiae.

Authors:  Laura N Rusché; Ann L Kirchmaier; Jasper Rine
Journal:  Mol Biol Cell       Date:  2002-07       Impact factor: 4.138

2.  General transcriptional silencing by a Polycomb response element in Drosophila.

Authors:  Aditya K Sengupta; Antje Kuhrs; Jürg Müller
Journal:  Development       Date:  2004-03-31       Impact factor: 6.868

3.  Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.

Authors:  Mohammad R Motamedi; André Verdel; Serafin U Colmenares; Scott A Gerber; Steven P Gygi; Danesh Moazed
Journal:  Cell       Date:  2004-12-17       Impact factor: 41.582

4.  On the use of the word 'epigenetic'.

Authors:  Mark Ptashne
Journal:  Curr Biol       Date:  2007-04-03       Impact factor: 10.834

Review 5.  Epigenetic decisions in mammalian germ cells.

Authors:  Christopher B Schaefer; Steen K T Ooi; Timothy H Bestor; Déborah Bourc'his
Journal:  Science       Date:  2007-04-20       Impact factor: 47.728

6.  MyoD is a sequence-specific DNA binding protein requiring a region of myc homology to bind to the muscle creatine kinase enhancer.

Authors:  A B Lassar; J N Buskin; D Lockshon; R L Davis; S Apone; S D Hauschka; H Weintraub
Journal:  Cell       Date:  1989-09-08       Impact factor: 41.582

7.  Intergenic transcription through a polycomb group response element counteracts silencing.

Authors:  Sabine Schmitt; Matthias Prestel; Renato Paro
Journal:  Genes Dev       Date:  2005-03-01       Impact factor: 11.361

8.  A synthetic silencer mediates SIR-dependent functions in Saccharomyces cerevisiae.

Authors:  F J McNally; J Rine
Journal:  Mol Cell Biol       Date:  1991-11       Impact factor: 4.272

9.  Hir proteins are required for position-dependent gene silencing in Saccharomyces cerevisiae in the absence of chromatin assembly factor I.

Authors:  P D Kaufman; J L Cohen; M A Osley
Journal:  Mol Cell Biol       Date:  1998-08       Impact factor: 4.272

10.  Identification of a non-basic domain in the histone H4 N-terminus required for repression of the yeast silent mating loci.

Authors:  L M Johnson; G Fisher-Adams; M Grunstein
Journal:  EMBO J       Date:  1992-06       Impact factor: 11.598

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  120 in total

Review 1.  Linking DNA replication to heterochromatin silencing and epigenetic inheritance.

Authors:  Qing Li; Zhiguo Zhang
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2012-01       Impact factor: 3.848

Review 2.  Epigenetic memories: structural marks or active circuits?

Authors:  Floriane Nicol-Benoît; Pascale Le-Goff; Yves Le-Dréan; Florence Demay; Farzad Pakdel; Gilles Flouriot; Denis Michel
Journal:  Cell Mol Life Sci       Date:  2012-02-14       Impact factor: 9.261

3.  Corepressor protein CDYL functions as a molecular bridge between polycomb repressor complex 2 and repressive chromatin mark trimethylated histone lysine 27.

Authors:  Yu Zhang; Xiaohan Yang; Bin Gui; Guojia Xie; Di Zhang; Yongfeng Shang; Jing Liang
Journal:  J Biol Chem       Date:  2011-10-17       Impact factor: 5.157

4.  Schizosaccharomyces pombe Hat1 (Kat1) is associated with Mis16 and is required for telomeric silencing.

Authors:  Kevin Tong; Thomas Keller; Charles S Hoffman; Anthony T Annunziato
Journal:  Eukaryot Cell       Date:  2012-07-06

5.  HBO1 (KAT7) Does Not Have an Essential Role in Cell Proliferation, DNA Replication, or Histone 4 Acetylation in Human Cells.

Authors:  Anne K Voss; Tim Thomas; Andrew J Kueh; Samantha Eccles; Leonie Tang; Alexandra L Garnham; Rose E May; Marco J Herold; Gordon K Smyth
Journal:  Mol Cell Biol       Date:  2020-01-30       Impact factor: 4.272

Review 6.  Chromatin regulation at the frontier of synthetic biology.

Authors:  Albert J Keung; J Keith Joung; Ahmad S Khalil; James J Collins
Journal:  Nat Rev Genet       Date:  2015-02-10       Impact factor: 53.242

7.  Sir3 and epigenetic inheritance of silent chromatin in Saccharomyces cerevisiae.

Authors:  Tina Motwani; Minakshi Poddar; Scott G Holmes
Journal:  Mol Cell Biol       Date:  2012-05-14       Impact factor: 4.272

8.  Global DNA methylation remodeling accompanies CD8 T cell effector function.

Authors:  Christopher D Scharer; Benjamin G Barwick; Benjamin A Youngblood; Rafi Ahmed; Jeremy M Boss
Journal:  J Immunol       Date:  2013-08-16       Impact factor: 5.422

Review 9.  Applications of alignment-free methods in epigenomics.

Authors:  Luca Pinello; Giosuè Lo Bosco; Guo-Cheng Yuan
Journal:  Brief Bioinform       Date:  2013-11-06       Impact factor: 11.622

10.  DNA Methylation on N6-Adenine in C. elegans.

Authors:  Eric Lieberman Greer; Mario Andres Blanco; Lei Gu; Erdem Sendinc; Jianzhao Liu; David Aristizábal-Corrales; Chih-Hung Hsu; L Aravind; Chuan He; Yang Shi
Journal:  Cell       Date:  2015-04-30       Impact factor: 41.582

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