| Literature DB >> 21850187 |
D A Mackey1, A W Hewitt, J B Ruddle, B Vote, R G Buttery, C Toomes, R Metlapally, Y J Li, K N Tran-Viet, F Malecaze, P Calvas, T Rosenberg, J A Guggenheim, T L Young.
Abstract
PURPOSE: To describe an Australian pedigree of European descent with a variable autosomal dominant phenotype of: pediatric cortical cataract (CC), asymmetric myopia with astigmatism, familial exudative vitreoretinopathy (FEVR), and primary open-angle glaucoma (POAG).Entities:
Mesh:
Year: 2011 PMID: 21850187 PMCID: PMC3156798
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Microsatellite primers and conditions.
| D11S4187 | F TCTTGAACCCGGGAAG | 273-289 | 55 °C | Invitrogen Taq & buffer |
| | R CTGGTGCTGTGCTTGG | | | |
| D11S896 | F ATCTCCCCTAGCTGTTTTGGA | 169-183 | 60 °C | Invitrogen Taq & buffer |
| | R AGTTCATATCCACCTCACACA | | | |
| D11S1367 | F GCTGACATTTATTCACATGGC | 224-244 | 60 °C | Invitrogen Taq & buffer |
| | R ACAGTGTTATCTCCCTGGCA | | | |
| D11S2006 | F CTTGTGGGCTGTAGTTTGCT | ~325 | 55 °C | Invitrogen Taq & buffer |
| | R AAAGAGTAAACTCAATGAAAGATGC | | | |
| D11S4095 | F TCCCTGGCTATCTTGAATC | 173-205 | 55 °C | Invitrogen Taq & buffer |
| | R CTTGACTGGGTCCACG | | | |
| D11S937 | F CTAATAAACAAATCCCTCTACCTCC | 230-264 | 60 °C | Invitrogen Taq & buffer |
| | R TAGTCAGTCAGGGACCCAAGT | | | |
| D11S929 | F AGGCCCTTCCAAGATCAG | 218-240 | 60 °C | Invitrogen Taq & buffer |
| | R CCCAGTTGCCGAACTACC | | | |
| D11S4115 | F TGGCATGTAAATNTAAGAGACTCAC | 185-199 | 50 °C | Invitrogen Taq & buffer |
| | R CTGCTACCTCAGAAGTATCTCAA | | | |
| D11S4154 | F ATCCCTTGGCTTTCTCAGAGCAC | 146-158 | 65 °C | Invitrogen Taq & buffer |
| | R GGTGCCCCTAACCTCCATGT | | | |
| D11S4203 | F GAATAGCCACTGACTTCAGG | 218-278 | 60 °C | Invitrogen Taq & buffer |
| | R CAGGATGCTGGAATAGAGAA | | | |
| D11S4083 | F TTTAACCCAAGGGCAGGAC | 178-206 | 55 °C | Invitrogen Taq & buffer |
| | R CATGTGTACCCAAGGGCAG | | | |
| D11S4102 | F CACCACTGGGTACTGCCATC | 142-174 | 60 °C | Invitrogen Taq & buffer |
| R GCTAAATCCTGGAAAGCCCTG |
TSPAN12 primers and PCR conditions.
| 2 | TSPAN12-ex2-F ATGTCCCGTGTTCTCTCTCC | 382 | 60 °C | Invitrogen Taq & buffer |
| | TSPAN12-ex2-R CCAGGGGTGGATTTCTTTGT | | | |
| 3 | TSPAN12-ex3-F TGGTAATTGGGAAAGATATTATGTAAC | 291 | 60 °C | Invitrogen Taq & buffer |
| | TSPAN12-ex3-R CCAAAAGATCAAGGAAGAGCA | | | |
| 4 | TSPAN12-ex4-F TGAGGCATCATGATTGAAAGAA | 346 | 60 °C | Invitrogen Taq & buffer |
| | TSPAN12-ex4-R GCTATCACTGCTCCCTAATCTTGT | | | |
| 5 | TSPAN12-ex5-F GGTCCCCTTTCTTGGAGAAC | 947 | 60 °C | Invitrogen Taq & buffer |
| | TSPAN12-ex5-R TGGAAATGTGCTTTAGACACAGA | | | |
| 6 | TSPAN12-ex6-F GTACAAAATACCTCTTCATTTATCACA | 529 | 60 °C | Hot shot master mix |
| | TSPAN12-ex6-R GAAGAAAAGCAGGCCATGAA | | | |
| 7 | TSPAN12-ex7-F TGATGACAGATATAGCTCTGGGT | 376 | 60 °C | Hot shot master mix |
| | TSPAN12-ex7-R TTTTAAGGCCTTTTACATTTAGACA | | | |
| 8 | TSPAN12-ex8-F GCTTTCCCTGAGAACCACTG | 605 | 60 °C | Hot shot master mix |
| TSPAN12-ex8-R CCATCCTCATTTTAAAGCATAGA |
Figure 1Reduced pedigree showing affected individuals. Square=male, circle=female, Top Right filled=myopia, Bottom Right filled=retinal detachment or dragged disc, Bottom Left filled=cataract, Top Left=primary open-angle glaucoma (POAG), n=examined and normal.
Clinical features of family members examined.
| V:2 | F | 81 | −0.75/-2.0x70 | +0.75/-1.5x65 | 45.3/44.3 | 43.8/42.9 | 25.05 | 23.56 | Yes | Yes | None |
| V:4 | F | 83 | −2/-3.25x45 | −3.25/-1.0x95 | 49.2/53.9* | 48.6/46.2 | 25.44 | 24.37 | Yes | Yes | Dragged disc |
| VI:7 | F | 65 | +0.25/-3.0x180 | −0.25/-3.5x75 | 45.3/42.25* | 45.8/43.0 | 23.75 | 23.88 | Yes | Yes | Dragged disc |
| VI:12 | F | 76 | NR | NR | NR | NR | NR | NR | Yes | Yes | None |
| VI:13 | F | 86 | NR | NR | NR | NR | NR | NR | No | Yes | None |
| VII:1 | M | 45 | 0/-0.25x180 | 0/-0.25x180 | NR | NR | NR | NR | No | No | None |
| VII:3 | F | 43 | 0/-1.5x180 | 0/-0.25x160 | 40.0/43.1 | 43.4/44.3 | NR | NR | Yes | No | None |
| VII:5 | M | 39 | −3.25/-4.0x180 | −0.5/-1x175 | 43.5/45.1 | 43.5/43.6 | 24.60 | 22.63 | Yes | Yes | Dragged disc |
| VII:6 | F | 33 | −0.75 | −0.5/-0.75x170 | NR | NR | NR | NR | No | No | None |
| VII:7 | M | 36 | −2.25/-0.5x155 | −6.25/-1.5x145 | 42.1/ 42.3 | 43.5/43.1 | 24.62 | 26.77 | Yes | Yes | Dragged disc |
| VII:8 | F | 38 | NR | NR | NR | NR | NR | NR | No | No | None |
| VIII:3 | F | 25 | −0.25/-0.5x88 | +0.5/-0.25x102 | NR | NR | NR | NR | Yes | No | None |
| VIII:5 | M | 16 | −1.75/-1.25x50 | −6.25/-6.75x175 | 40.0/43.1 | 43.4/ 44.3 | NR | NR | Yes | No | None |
| VIII:6 | M | 12 | −2.0/-5.0x90 | +0.5/-0.5x160 | NR | NR | NR | NR | Yes | No | None |
| VIII:7 | M | 8 | −5.75/-0.5x55 | −9.25/-3.5x95 | 41.0/41.8 | 40.0/41.0 | 25.65 | NR | Yes | No | Dragged disc |
| VIII:8 | F | 17 | +0.5/-7.25x165 | ND | NR | ND | NR | ND | ND | ND | Total detachment OU |
| VIII:9 | F | 15 | −0.25/-0.5x135 | 0/-0.25x55 | NR | NR | NR | NR | No | No | None |
| IX:1 | M | 3 | 1.5 | 0/-0.5x121 | 45.3/44.3 | 43.8/42.9 | 25.05 | NR | Yes | No | None |
Abbreviations: F, female; M, male; D, diopters; NR, not recorded; ND, not determinable; OU, both eyes. *measured following cataract surgery
Figure 2Lens, optic disc, and retina photos of individuals. In the figure, A indicates individual V:2; B indicates individual V:4; C indicates individual VI:7; D indicates individual VII:3; E indicates individual VII:5; F indicates individual VII:7; G indicates individual VIII:3; H indicates individual VIII:5; I indicates individual VIII:6; J indicates individual VIII:7; K indicates individual VIII:7 followup lens photo five years after first photos; L indicates individual VIII:8; M indicates individual VIII:9; and N indicates individual IX:1.
Figure 324–2 Humphrey Visual Fields of Individuals. A indicates individual V:2; B indicates individual V:4; C indicates individual VI:7; D indicates individual VII:5; and E indicates individual VII:7.
Figure 4Haplotype analysis of FEVR genes. Only a subset of the pedigree is displayed; shaded individuals are those whose phenotype suggests FEVR. EVR2 (Norrin) is excluded by the pedigree structure showing male to male transmission. For each locus examined, the affected individuals do not share the same haplotype, indicating that the causative gene does not reside in this region of the chromosomal. A: EVR1 (FZD4); B: EVR3 11p13-p12; C: EVR4 (LRP5).
Summary of the Johns Hopkins Center for Inherited Disease Research (CIDR) results for the family.
| 1 | rs1981193 | 121.82 | NS | NS | |
| 1 | rs1806753 | 160.34 | NS | NS | |
| 2 | rs2053372 | 47.98 | NS | NS | |
| 2 | rs2008535 | 54.9 | NS | NS | |
| 2 | rs764464 | 65.31 | NS | NS | |
| 2 | rs1022298 | 117.27 | NS | NS | |
| 2 | rs264963 | 117.39 | NS | NS | |
| 3 | rs2076993 | 46.5 | NS | NS | |
| 3 | rs1348979 | 49.44 | NS | NS | |
| 3 | rs1127732 | 59.51 | NS | NS | |
| 3 | rs713144 | 60.4 | NS | NS | |
| 3 | rs1382554 | 60.41 | NS | NS | |
| 3 | rs1405793 | 64.61 | NS | NS | |
| 3 | rs1495704 | 65.68 | NS | NS | |
| 3 | rs1995137 | 66.29 | NS | NS | |
| 3 | rs1351631 | 67.73 | NS | NS | |
| 3 | rs737516 | 67.73 | NS | NS | |
| 3 | rs1013758 | 67.81 | NS | NS | |
| 3 | rs844438 | 78.91 | NS | NS | |
| 3 | rs1447971 | 82.11 | NS | NS | |
| 3 | rs935734 | 92.98 | NS | NS | |
| 3 | rs1019374 | 95 | NS | NS | |
| 3 | rs1388276 | 99.96 | NS | NS | |
| 4 | rs751266 | 67.19 | NS | NS | |
| 4 | rs896656 | 93.96 | NS | NS | |
| 8 | rs2203837 | 23.58 | NS | NS | |
| 8 | rs334206 | 32.33 | NS | NS | |
| 8 | rs241202 | 48.58 | NS | NS | |
| 8 | rs4107736 | 50.87 | NS | NS | |
| 8 | rs1481747 | 53.13 | NS | NS | |
| 8 | rs1955185 | 61.16 | NS | NS | |
| 8 | rs716583 | 65.56 | NS | NS | |
| 8 | rs344278 | 74.88 | NS | NS | |
| 8 | rs1460239 | 112.26 | NS | NS | |
| 8 | rs1433396 | 122.14 | NS | NS | |
| 8 | rs766811 | 138.68 | NS | NS | |
| 9 | rs1532310 | 0.124137 | NS | NS | |
| 9 | rs1532309 | 0.124434 | NS | NS | |
| 9 | rs1143025 | 30.9 | NS | NS | |
| 9 | rs1029015 | 35.12 | NS | NS | |
| 9 | rs716933 | 60.37 | NS | NS | |
| 9 | rs987187 | 60.4 | NS | NS | |
| 9 | rs1333342 | 69.96 | NS | NS | |
| 10 | rs1346300 | 75.86 | NS | NS | |
| 11 | rs676943 | 125.79 | NS | NS | |
| 12 | rs871880 | 58.31 | NS | NS | |
| 12 | rs7134835 | 161.7 | NS | NS | |
| 12 | rs1278602 | 171.56 | NS | NS | |
| 12 | rs1278601 | 171.57 | NS | NS | |
| 12 | rs937538 | 171.78 | NS | NS | |
| 13 | rs2985981 | 49.25 | NS | NS | |
| 13 | rs2031836 | 115.73 | NS | NS | |
| 15 | rs1435735 | 46.31 | NS | NS | |
| 15 | rs890153 | 46.31 | NS | NS | |
| 15 | rs725463 | 60.22 | NS | NS | |
| 15 | rs1445020 | 71.05 | NS | NS | |
| 16 | rs1019141 | 19.98 | NS | NS | |
| 16 | rs889593 | 122.83 | 0.018 | 1.0217 | |
| 16 | rs299956 | 123.93 | 0.734 | 1.5971 | |
| 16 | rs2076962 | 125.29 | −0.036 | 1.8771 | |
| 16 | rs3794668 | 126.97 | −0.011 | 1.8763 | |
| 16 | rs1056707 | 128.94 | 0.057 | 1.8782 | |
| 16 | rs750740 | 129.03 | 0.399 | 1.8783 | |
| 16 | rs463701 | 130.14 | −0.067 | 1.8804 | |
| 16 | rs452176 | 130.21 | 0.01 | 1.8804 | |
| 16 | rs1006547 | 130.48 | 0.018 | 1.8805 | |
| 16 | rs1800330 | 130.5 | 0.891 | NS | NS |
| 16 | rs8577 | 130.86 | 0.549 | 1.8755 | |
| 17 | rs721429 | 95.95 | NS | NS | |
| 18 | rs1972602 | 45.77 | NS | NS | |
| 18 | rs1548755 | 51.57 | NS | NS | |
| 18 | rs1131709 | 56.82 | NS | NS | |
| 18 | rs650680 | 58.25 | NS | NS | |
| 18 | rs931078 | 84.57 | NS | NS | |
| 20 | rs1535382 | 14.16 | NS | NS | |
| 21 | rs1041756 | 33.98 | NS | NS | |
| 21 | rs2839576 | 62.26 | NS | NS |
2-point analyses with Fastlink under a dominant model; multipoint results, both parametric and non-parametric, using the multipoint engine for rapid likelihood inference (MERLIN). Results in italics highlight suggestive loci, while the results in bold were found to be suggestive under all models tested. Abbreviations: Chr, chromosome; cM, centimorgan; 2PT, two point; MPT, multi-point; NS, not significant.