Literature DB >> 21840834

Molecular identification and barcodes for the genus Nymphaea.

Arunrat Chaveerach1, T Tanee, Runglawan Sudmoon.   

Abstract

Nymphaea species, the most popular decorative plants, were collected for specificity of inter-simple sequence repeat (ISSR) analyses in species identification and differentiation of cultivars and natural populations. Dendrogram constructed from ISSR analyses separated out wild species, namely Nymphaea cyanea, N. nouchali, N. capensis, N. lotus and an outgroup N. mexicana, and cultivars. The dendrogram indicates that the cultivars should be differentiated from N. capensis, as they are sister individuals of N. capensis. The ISSR banding data and the dendrogram are concordantly concluded that wild N. capensis would be an effective type species for producing different cultivars. After plant identification by ISSR markers, DNA barcodes of all sample materials were done to provide species specific markers which can be used for rapid and accurate further plant identification without morphological characters. DNA barcoding sequence analysis indicates genetic distance values. All sequences were recorded in GenBank database.

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Year:  2011        PMID: 21840834     DOI: 10.1556/ABiol.62.2011.3.11

Source DB:  PubMed          Journal:  Acta Biol Hung        ISSN: 0236-5383


  3 in total

1.  Phylogenetic reconstruction in the order Nymphaeales: ITS2 secondary structure analysis and in silico testing of maturase k (matK) as a potential marker for DNA bar coding.

Authors:  Devendra Kumar Biswal; Manish Debnath; Shakti Kumar; Pramod Tandon
Journal:  BMC Bioinformatics       Date:  2012-12-13       Impact factor: 3.169

2.  Efficient DNA barcode regions for classifying Piper species (Piperaceae).

Authors:  Arunrat Chaveerach; Tawatchai Tanee; Arisa Sanubol; Pansa Monkheang; Runglawan Sudmoon
Journal:  PhytoKeys       Date:  2016-09-20       Impact factor: 1.635

Review 3.  Water lilies as emerging models for Darwin's abominable mystery.

Authors:  Fei Chen; Xing Liu; Cuiwei Yu; Yuchu Chen; Haibao Tang; Liangsheng Zhang
Journal:  Hortic Res       Date:  2017-10-04       Impact factor: 6.793

  3 in total

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