Literature DB >> 21837204

5-Carb-oxy-2-isopropyl-1H-imidazol-3-ium-4-carboxyl-ate monohydrate.

Chao-Jun Du, Zheng-Hai Shi, Li-Sheng Wang, Chao-Ling Du.   

Abstract

In the title compound, C(8)H(10)N(2)O(4)·H(2)O, the imidazole N atom is protonated and one of the carboxyl-ate groups is deprotoned, forming a zwitterion. An intra-molecular O-H⋯O hydrogen bond occurs. The crystal structure is stabilized by inter-molecular N-H⋯O and O-H⋯O hydrogen bonds. In addition, inter-molecular N-H⋯O and O-H⋯O hydrogen bonds link the mol-ecules into two-dimensional networks parallel to (10[Formula: see text]).

Entities:  

Year:  2011        PMID: 21837204      PMCID: PMC3152056          DOI: 10.1107/S1600536811024767

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of related imidazole­dicarb­oxy­lic acid structures in coordination chemistry, see: Sun et al. (2006 ▶); Merchan & Stoeckli-Evans (2007 ▶); Guo (2009 ▶); Wang & Qin (2010 ▶); Wang et al. (2010 ▶); Feng et al. (2010 ▶); Li et al. (2010 ▶). For the synthesis of the title compound, see: Alcalde et al. (1992 ▶).

Experimental

Crystal data

C8H10N2O4·H2O M = 216.20 Monoclinic, a = 7.828 (2) Å b = 14.308 (4) Å c = 8.930 (2) Å β = 93.590 (3)° V = 998.2 (4) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 298 K 0.40 × 0.32 × 0.28 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.953, T max = 0.967 4874 measured reflections 2147 independent reflections 1599 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.123 S = 1.06 2147 reflections 140 parameters 3 restraints H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811024767/lr2015sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024767/lr2015Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811024767/lr2015Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H10N2O4·H2OF(000) = 456
Mr = 216.20Dx = 1.439 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1379 reflections
a = 7.828 (2) Åθ = 2.7–25.1°
b = 14.308 (4) ŵ = 0.12 mm1
c = 8.930 (2) ÅT = 298 K
β = 93.590 (3)°Block, colourless
V = 998.2 (4) Å30.40 × 0.32 × 0.28 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer2147 independent reflections
Radiation source: fine-focus sealed tube1599 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 27.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→9
Tmin = 0.953, Tmax = 0.967k = −17→18
4874 measured reflectionsl = −11→7
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.123w = 1/[σ2(Fo2) + (0.059P)2 + 0.133P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2147 reflectionsΔρmax = 0.32 e Å3
140 parametersΔρmin = −0.19 e Å3
3 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.016 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression ofF2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C41.2174 (2)0.88114 (12)0.4485 (2)0.0397 (4)
C21.0189 (2)0.76673 (11)0.29253 (18)0.0346 (4)
C31.0710 (2)0.85223 (11)0.34578 (19)0.0350 (4)
C60.6833 (2)0.91545 (12)0.1177 (2)0.0413 (4)
H60.69710.98350.12050.050*
C11.0889 (2)0.67085 (11)0.3136 (2)0.0391 (4)
C50.8360 (2)0.87217 (11)0.19793 (19)0.0366 (4)
C70.5240 (2)0.89011 (17)0.1978 (2)0.0593 (6)
H7A0.51390.82330.20310.089*
H7B0.42490.91540.14350.089*
H7C0.53280.91560.29750.089*
C80.6644 (3)0.88445 (16)−0.0461 (2)0.0622 (6)
H8A0.76200.9051−0.09710.093*
H8B0.56240.9113−0.09340.093*
H8C0.65710.8175−0.05070.093*
O21.21461 (18)0.66102 (9)0.41079 (17)0.0588 (4)
O41.24232 (16)0.96417 (9)0.47291 (15)0.0527 (4)
O31.31065 (17)0.81470 (9)0.50578 (16)0.0521 (4)
H31.27830.76470.46920.078*
O11.02199 (16)0.60794 (8)0.23815 (16)0.0494 (4)
N10.87377 (17)0.78132 (9)0.20091 (15)0.0368 (3)
H10.81620.73840.15290.044*
N20.95551 (16)0.91583 (9)0.28360 (16)0.0372 (4)
H20.96010.97520.29810.045*
O50.66848 (18)0.65027 (9)0.07026 (18)0.0638 (5)
H5B0.56040.65490.05620.096*
H5A0.69380.59270.06460.096*
U11U22U33U12U13U23
C40.0340 (9)0.0334 (10)0.0514 (10)0.0000 (7)0.0003 (7)−0.0017 (8)
C20.0306 (8)0.0264 (8)0.0464 (9)0.0013 (6)−0.0014 (7)0.0008 (7)
C30.0308 (8)0.0258 (8)0.0483 (10)0.0020 (6)0.0007 (7)0.0004 (6)
C60.0366 (9)0.0297 (9)0.0565 (11)0.0066 (7)−0.0047 (7)0.0023 (7)
C10.0346 (9)0.0256 (9)0.0566 (10)0.0024 (7)−0.0013 (7)0.0012 (7)
C50.0336 (9)0.0260 (8)0.0499 (10)0.0017 (7)−0.0005 (7)0.0001 (7)
C70.0405 (11)0.0786 (16)0.0581 (12)0.0123 (10)−0.0015 (9)0.0096 (11)
C80.0637 (13)0.0724 (16)0.0502 (12)0.0243 (12)0.0007 (10)0.0104 (10)
O20.0564 (9)0.0348 (8)0.0813 (10)0.0108 (6)−0.0258 (7)0.0023 (6)
O40.0521 (8)0.0331 (7)0.0711 (9)−0.0084 (6)−0.0102 (6)−0.0041 (6)
O30.0438 (8)0.0372 (7)0.0725 (9)0.0015 (6)−0.0178 (6)−0.0031 (6)
O10.0450 (7)0.0245 (6)0.0775 (9)0.0024 (5)−0.0040 (6)−0.0058 (6)
N10.0336 (7)0.0242 (7)0.0514 (8)0.0017 (6)−0.0070 (6)−0.0022 (6)
N20.0334 (8)0.0205 (7)0.0570 (9)0.0013 (5)−0.0028 (6)−0.0026 (6)
O50.0516 (8)0.0357 (8)0.0994 (11)0.0046 (6)−0.0323 (8)−0.0154 (7)
C4—O41.221 (2)C5—N21.327 (2)
C4—O31.285 (2)C5—N11.333 (2)
C4—C31.481 (2)C7—H7A0.9600
C2—C31.366 (2)C7—H7B0.9600
C2—N11.374 (2)C7—H7C0.9600
C2—C11.485 (2)C8—H8A0.9600
C3—N21.375 (2)C8—H8B0.9600
C6—C51.489 (2)C8—H8C0.9600
C6—C71.520 (3)O3—H30.8200
C6—C81.526 (3)N1—H10.8600
C6—H60.9800N2—H20.8600
C1—O11.222 (2)O5—H5B0.8500
C1—O21.279 (2)O5—H5A0.8501
O4—C4—O3124.60 (17)C6—C7—H7A109.5
O4—C4—C3119.41 (16)C6—C7—H7B109.5
O3—C4—C3115.99 (15)H7A—C7—H7B109.5
C3—C2—N1106.79 (14)C6—C7—H7C109.5
C3—C2—C1133.16 (16)H7A—C7—H7C109.5
N1—C2—C1120.04 (15)H7B—C7—H7C109.5
C2—C3—N2106.13 (14)C6—C8—H8A109.5
C2—C3—C4131.93 (15)C6—C8—H8B109.5
N2—C3—C4121.93 (14)H8A—C8—H8B109.5
C5—C6—C7109.35 (15)C6—C8—H8C109.5
C5—C6—C8111.52 (14)H8A—C8—H8C109.5
C7—C6—C8110.41 (17)H8B—C8—H8C109.5
C5—C6—H6108.5C4—O3—H3109.5
C7—C6—H6108.5C5—N1—C2109.54 (14)
C8—C6—H6108.5C5—N1—H1125.2
O1—C1—O2125.32 (16)C2—N1—H1125.2
O1—C1—C2117.95 (16)C5—N2—C3110.08 (14)
O2—C1—C2116.73 (15)C5—N2—H2125.0
N2—C5—N1107.44 (14)C3—N2—H2125.0
N2—C5—C6126.67 (15)H5B—O5—H5A107.5
N1—C5—C6125.84 (15)
N1—C2—C3—N2−0.31 (17)C7—C6—C5—N2−106.3 (2)
C1—C2—C3—N2178.46 (17)C8—C6—C5—N2131.29 (19)
N1—C2—C3—C4179.79 (16)C7—C6—C5—N171.0 (2)
C1—C2—C3—C4−1.4 (3)C8—C6—C5—N1−51.3 (2)
O4—C4—C3—C2175.88 (18)N2—C5—N1—C21.04 (18)
O3—C4—C3—C2−3.9 (3)C6—C5—N1—C2−176.75 (15)
O4—C4—C3—N2−4.0 (2)C3—C2—N1—C5−0.44 (18)
O3—C4—C3—N2176.25 (16)C1—C2—N1—C5−179.40 (15)
C3—C2—C1—O1−172.81 (18)N1—C5—N2—C3−1.24 (18)
N1—C2—C1—O15.8 (2)C6—C5—N2—C3176.52 (16)
C3—C2—C1—O27.7 (3)C2—C3—N2—C50.97 (18)
N1—C2—C1—O2−173.71 (15)C4—C3—N2—C5−179.12 (15)
D—H···AD—HH···AD···AD—H···A
O3—H3···O20.821.642.4576 (19)175
N1—H1···O50.861.832.6879 (19)171
N2—H2···O1i0.861.932.7619 (19)162
O5—H5B···O3ii0.852.032.8684 (19)171
O5—H5A···O4iii0.851.942.7857 (19)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O20.821.642.4576 (19)175
N1—H1⋯O50.861.832.6879 (19)171
N2—H2⋯O1i0.861.932.7619 (19)162
O5—H5B⋯O3ii0.852.032.8684 (19)171
O5—H5A⋯O4iii0.851.942.7857 (19)173

Symmetry codes: (i) ; (ii) ; (iii) .

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