| Literature DB >> 21837204 |
Chao-Jun Du, Zheng-Hai Shi, Li-Sheng Wang, Chao-Ling Du.
Abstract
In the title compound, C(8)H(10)N(2)O(4)·H(2)O, the imidazole N atom is protonated and one of the carboxyl-ate groups is deprotoned, forming a zwitterion. An intra-molecular O-H⋯O hydrogen bond occurs. The crystal structure is stabilized by inter-molecular N-H⋯O and O-H⋯O hydrogen bonds. In addition, inter-molecular N-H⋯O and O-H⋯O hydrogen bonds link the mol-ecules into two-dimensional networks parallel to (10[Formula: see text]).Entities:
Year: 2011 PMID: 21837204 PMCID: PMC3152056 DOI: 10.1107/S1600536811024767
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H10N2O4·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1379 reflections |
| θ = 2.7–25.1° | |
| µ = 0.12 mm−1 | |
| β = 93.590 (3)° | Block, colourless |
| 0.40 × 0.32 × 0.28 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 2147 independent reflections |
| Radiation source: fine-focus sealed tube | 1599 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.0°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 4874 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2147 reflections | Δρmax = 0.32 e Å−3 |
| 140 parameters | Δρmin = −0.19 e Å−3 |
| 3 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.016 (3) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression ofF2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
| C4 | 1.2174 (2) | 0.88114 (12) | 0.4485 (2) | 0.0397 (4) | |
| C2 | 1.0189 (2) | 0.76673 (11) | 0.29253 (18) | 0.0346 (4) | |
| C3 | 1.0710 (2) | 0.85223 (11) | 0.34578 (19) | 0.0350 (4) | |
| C6 | 0.6833 (2) | 0.91545 (12) | 0.1177 (2) | 0.0413 (4) | |
| H6 | 0.6971 | 0.9835 | 0.1205 | 0.050* | |
| C1 | 1.0889 (2) | 0.67085 (11) | 0.3136 (2) | 0.0391 (4) | |
| C5 | 0.8360 (2) | 0.87217 (11) | 0.19793 (19) | 0.0366 (4) | |
| C7 | 0.5240 (2) | 0.89011 (17) | 0.1978 (2) | 0.0593 (6) | |
| H7A | 0.5139 | 0.8233 | 0.2031 | 0.089* | |
| H7B | 0.4249 | 0.9154 | 0.1435 | 0.089* | |
| H7C | 0.5328 | 0.9156 | 0.2975 | 0.089* | |
| C8 | 0.6644 (3) | 0.88445 (16) | −0.0461 (2) | 0.0622 (6) | |
| H8A | 0.7620 | 0.9051 | −0.0971 | 0.093* | |
| H8B | 0.5624 | 0.9113 | −0.0934 | 0.093* | |
| H8C | 0.6571 | 0.8175 | −0.0507 | 0.093* | |
| O2 | 1.21461 (18) | 0.66102 (9) | 0.41079 (17) | 0.0588 (4) | |
| O4 | 1.24232 (16) | 0.96417 (9) | 0.47291 (15) | 0.0527 (4) | |
| O3 | 1.31065 (17) | 0.81470 (9) | 0.50578 (16) | 0.0521 (4) | |
| H3 | 1.2783 | 0.7647 | 0.4692 | 0.078* | |
| O1 | 1.02199 (16) | 0.60794 (8) | 0.23815 (16) | 0.0494 (4) | |
| N1 | 0.87377 (17) | 0.78132 (9) | 0.20091 (15) | 0.0368 (3) | |
| H1 | 0.8162 | 0.7384 | 0.1529 | 0.044* | |
| N2 | 0.95551 (16) | 0.91583 (9) | 0.28360 (16) | 0.0372 (4) | |
| H2 | 0.9601 | 0.9752 | 0.2981 | 0.045* | |
| O5 | 0.66848 (18) | 0.65027 (9) | 0.07026 (18) | 0.0638 (5) | |
| H5B | 0.5604 | 0.6549 | 0.0562 | 0.096* | |
| H5A | 0.6938 | 0.5927 | 0.0646 | 0.096* |
| C4 | 0.0340 (9) | 0.0334 (10) | 0.0514 (10) | 0.0000 (7) | 0.0003 (7) | −0.0017 (8) |
| C2 | 0.0306 (8) | 0.0264 (8) | 0.0464 (9) | 0.0013 (6) | −0.0014 (7) | 0.0008 (7) |
| C3 | 0.0308 (8) | 0.0258 (8) | 0.0483 (10) | 0.0020 (6) | 0.0007 (7) | 0.0004 (6) |
| C6 | 0.0366 (9) | 0.0297 (9) | 0.0565 (11) | 0.0066 (7) | −0.0047 (7) | 0.0023 (7) |
| C1 | 0.0346 (9) | 0.0256 (9) | 0.0566 (10) | 0.0024 (7) | −0.0013 (7) | 0.0012 (7) |
| C5 | 0.0336 (9) | 0.0260 (8) | 0.0499 (10) | 0.0017 (7) | −0.0005 (7) | 0.0001 (7) |
| C7 | 0.0405 (11) | 0.0786 (16) | 0.0581 (12) | 0.0123 (10) | −0.0015 (9) | 0.0096 (11) |
| C8 | 0.0637 (13) | 0.0724 (16) | 0.0502 (12) | 0.0243 (12) | 0.0007 (10) | 0.0104 (10) |
| O2 | 0.0564 (9) | 0.0348 (8) | 0.0813 (10) | 0.0108 (6) | −0.0258 (7) | 0.0023 (6) |
| O4 | 0.0521 (8) | 0.0331 (7) | 0.0711 (9) | −0.0084 (6) | −0.0102 (6) | −0.0041 (6) |
| O3 | 0.0438 (8) | 0.0372 (7) | 0.0725 (9) | 0.0015 (6) | −0.0178 (6) | −0.0031 (6) |
| O1 | 0.0450 (7) | 0.0245 (6) | 0.0775 (9) | 0.0024 (5) | −0.0040 (6) | −0.0058 (6) |
| N1 | 0.0336 (7) | 0.0242 (7) | 0.0514 (8) | 0.0017 (6) | −0.0070 (6) | −0.0022 (6) |
| N2 | 0.0334 (8) | 0.0205 (7) | 0.0570 (9) | 0.0013 (5) | −0.0028 (6) | −0.0026 (6) |
| O5 | 0.0516 (8) | 0.0357 (8) | 0.0994 (11) | 0.0046 (6) | −0.0323 (8) | −0.0154 (7) |
| C4—O4 | 1.221 (2) | C5—N2 | 1.327 (2) |
| C4—O3 | 1.285 (2) | C5—N1 | 1.333 (2) |
| C4—C3 | 1.481 (2) | C7—H7A | 0.9600 |
| C2—C3 | 1.366 (2) | C7—H7B | 0.9600 |
| C2—N1 | 1.374 (2) | C7—H7C | 0.9600 |
| C2—C1 | 1.485 (2) | C8—H8A | 0.9600 |
| C3—N2 | 1.375 (2) | C8—H8B | 0.9600 |
| C6—C5 | 1.489 (2) | C8—H8C | 0.9600 |
| C6—C7 | 1.520 (3) | O3—H3 | 0.8200 |
| C6—C8 | 1.526 (3) | N1—H1 | 0.8600 |
| C6—H6 | 0.9800 | N2—H2 | 0.8600 |
| C1—O1 | 1.222 (2) | O5—H5B | 0.8500 |
| C1—O2 | 1.279 (2) | O5—H5A | 0.8501 |
| O4—C4—O3 | 124.60 (17) | C6—C7—H7A | 109.5 |
| O4—C4—C3 | 119.41 (16) | C6—C7—H7B | 109.5 |
| O3—C4—C3 | 115.99 (15) | H7A—C7—H7B | 109.5 |
| C3—C2—N1 | 106.79 (14) | C6—C7—H7C | 109.5 |
| C3—C2—C1 | 133.16 (16) | H7A—C7—H7C | 109.5 |
| N1—C2—C1 | 120.04 (15) | H7B—C7—H7C | 109.5 |
| C2—C3—N2 | 106.13 (14) | C6—C8—H8A | 109.5 |
| C2—C3—C4 | 131.93 (15) | C6—C8—H8B | 109.5 |
| N2—C3—C4 | 121.93 (14) | H8A—C8—H8B | 109.5 |
| C5—C6—C7 | 109.35 (15) | C6—C8—H8C | 109.5 |
| C5—C6—C8 | 111.52 (14) | H8A—C8—H8C | 109.5 |
| C7—C6—C8 | 110.41 (17) | H8B—C8—H8C | 109.5 |
| C5—C6—H6 | 108.5 | C4—O3—H3 | 109.5 |
| C7—C6—H6 | 108.5 | C5—N1—C2 | 109.54 (14) |
| C8—C6—H6 | 108.5 | C5—N1—H1 | 125.2 |
| O1—C1—O2 | 125.32 (16) | C2—N1—H1 | 125.2 |
| O1—C1—C2 | 117.95 (16) | C5—N2—C3 | 110.08 (14) |
| O2—C1—C2 | 116.73 (15) | C5—N2—H2 | 125.0 |
| N2—C5—N1 | 107.44 (14) | C3—N2—H2 | 125.0 |
| N2—C5—C6 | 126.67 (15) | H5B—O5—H5A | 107.5 |
| N1—C5—C6 | 125.84 (15) | ||
| N1—C2—C3—N2 | −0.31 (17) | C7—C6—C5—N2 | −106.3 (2) |
| C1—C2—C3—N2 | 178.46 (17) | C8—C6—C5—N2 | 131.29 (19) |
| N1—C2—C3—C4 | 179.79 (16) | C7—C6—C5—N1 | 71.0 (2) |
| C1—C2—C3—C4 | −1.4 (3) | C8—C6—C5—N1 | −51.3 (2) |
| O4—C4—C3—C2 | 175.88 (18) | N2—C5—N1—C2 | 1.04 (18) |
| O3—C4—C3—C2 | −3.9 (3) | C6—C5—N1—C2 | −176.75 (15) |
| O4—C4—C3—N2 | −4.0 (2) | C3—C2—N1—C5 | −0.44 (18) |
| O3—C4—C3—N2 | 176.25 (16) | C1—C2—N1—C5 | −179.40 (15) |
| C3—C2—C1—O1 | −172.81 (18) | N1—C5—N2—C3 | −1.24 (18) |
| N1—C2—C1—O1 | 5.8 (2) | C6—C5—N2—C3 | 176.52 (16) |
| C3—C2—C1—O2 | 7.7 (3) | C2—C3—N2—C5 | 0.97 (18) |
| N1—C2—C1—O2 | −173.71 (15) | C4—C3—N2—C5 | −179.12 (15) |
| H··· | ||||
| O3—H3···O2 | 0.82 | 1.64 | 2.4576 (19) | 175 |
| N1—H1···O5 | 0.86 | 1.83 | 2.6879 (19) | 171 |
| N2—H2···O1i | 0.86 | 1.93 | 2.7619 (19) | 162 |
| O5—H5B···O3ii | 0.85 | 2.03 | 2.8684 (19) | 171 |
| O5—H5A···O4iii | 0.85 | 1.94 | 2.7857 (19) | 173 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3⋯O2 | 0.82 | 1.64 | 2.4576 (19) | 175 |
| N1—H1⋯O5 | 0.86 | 1.83 | 2.6879 (19) | 171 |
| N2—H2⋯O1i | 0.86 | 1.93 | 2.7619 (19) | 162 |
| O5—H5 | 0.85 | 2.03 | 2.8684 (19) | 171 |
| O5—H5 | 0.85 | 1.94 | 2.7857 (19) | 173 |
Symmetry codes: (i) ; (ii) ; (iii) .