| Literature DB >> 21581665 |
Abstract
In the title compound, C(6)H(6)N(2)O(4)·H(2)O, one carboxyl group is deprotonated and one imidazole N atom is protonated. The organic mol-ecule, excluding methyl H atoms, is essentially planar, with an r.m.s. deviation of 0.0156 (1) Å. In the crystal structure, inter-molecular N-H⋯O hydrogen bonds link mol-ecules into chains along the b axis; these chains are further linked via O-H⋯O hydrogen bonds involving the water O atoms and carboxyl O atoms, generating a two-dimensional supra-molecular framework.Entities:
Year: 2008 PMID: 21581665 PMCID: PMC2967941 DOI: 10.1107/S1600536808040221
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H6N2O4·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 927 reflections |
| θ = 2.4–24.3° | |
| µ = 0.14 mm−1 | |
| β = 97.386 (5)° | Block, colorless |
| 0.23 × 0.09 × 0.08 mm | |
| Bruker SMART APEX area-detector diffractometer | 1538 independent reflections |
| Radiation source: fine-focus sealed tube | 1246 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.0°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 4506 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1538 reflections | (Δ/σ)max < 0.001 |
| 128 parameters | Δρmax = 0.25 e Å−3 |
| 4 restraints | Δρmin = −0.26 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.5312 (2) | 0.88207 (11) | 0.2430 (3) | 0.0404 (5) | |
| O3 | 0.1439 (2) | 0.68027 (12) | 0.1429 (3) | 0.0430 (5) | |
| H3 | 0.191 (3) | 0.7337 (12) | 0.157 (5) | 0.065* | |
| N2 | 0.5293 (2) | 0.56877 (13) | 0.2531 (3) | 0.0287 (5) | |
| H2 | 0.5126 | 0.5094 | 0.2501 | 0.034* | |
| O2 | 0.2822 (2) | 0.83103 (12) | 0.1822 (3) | 0.0436 (5) | |
| N1 | 0.6490 (2) | 0.70121 (13) | 0.2840 (3) | 0.0284 (5) | |
| H1 | 0.7232 | 0.7424 | 0.3045 | 0.034* | |
| C2 | 0.4901 (3) | 0.72074 (15) | 0.2375 (3) | 0.0265 (5) | |
| C3 | 0.4139 (3) | 0.63632 (15) | 0.2178 (3) | 0.0265 (5) | |
| C1 | 0.4314 (3) | 0.81906 (15) | 0.2198 (4) | 0.0303 (6) | |
| C4 | 0.6708 (3) | 0.60933 (16) | 0.2927 (4) | 0.0283 (5) | |
| C5 | 0.2437 (3) | 0.61108 (17) | 0.1680 (4) | 0.0335 (6) | |
| O4 | 0.2045 (2) | 0.52952 (12) | 0.1540 (3) | 0.0506 (6) | |
| C6 | 0.8249 (3) | 0.56070 (18) | 0.3429 (4) | 0.0405 (7) | |
| H6A | 0.8557 | 0.5333 | 0.2199 | 0.061* | |
| H6B | 0.8148 | 0.5124 | 0.4425 | 0.061* | |
| H6C | 0.9043 | 0.6049 | 0.3987 | 0.061* | |
| O1W | 0.8762 (2) | 0.83332 (13) | 0.3359 (4) | 0.0563 (6) | |
| H1WA | 0.961 (3) | 0.827 (2) | 0.419 (5) | 0.084* | |
| H1WB | 0.840 (4) | 0.8884 (12) | 0.345 (5) | 0.084* |
| O1 | 0.0417 (11) | 0.0175 (8) | 0.0613 (13) | −0.0014 (7) | 0.0041 (9) | −0.0002 (8) |
| O3 | 0.0293 (10) | 0.0278 (10) | 0.0697 (14) | −0.0004 (7) | −0.0020 (9) | 0.0000 (9) |
| N2 | 0.0313 (11) | 0.0172 (9) | 0.0371 (12) | 0.0002 (8) | 0.0025 (9) | −0.0009 (8) |
| O2 | 0.0360 (11) | 0.0272 (9) | 0.0664 (14) | 0.0062 (8) | 0.0025 (9) | 0.0008 (8) |
| N1 | 0.0287 (11) | 0.0206 (10) | 0.0351 (11) | −0.0044 (8) | 0.0016 (8) | −0.0009 (8) |
| C2 | 0.0288 (12) | 0.0229 (11) | 0.0275 (13) | 0.0001 (9) | 0.0028 (10) | −0.0002 (9) |
| C3 | 0.0330 (13) | 0.0200 (11) | 0.0267 (12) | 0.0015 (9) | 0.0042 (10) | 0.0005 (9) |
| C1 | 0.0380 (14) | 0.0214 (12) | 0.0315 (14) | 0.0013 (10) | 0.0046 (10) | 0.0005 (9) |
| C4 | 0.0304 (13) | 0.0230 (12) | 0.0311 (13) | −0.0008 (9) | 0.0028 (10) | −0.0005 (9) |
| C5 | 0.0307 (13) | 0.0278 (14) | 0.0413 (15) | −0.0016 (10) | 0.0023 (11) | 0.0009 (10) |
| O4 | 0.0399 (11) | 0.0261 (10) | 0.0835 (16) | −0.0082 (8) | −0.0013 (10) | −0.0008 (9) |
| C6 | 0.0346 (14) | 0.0309 (13) | 0.0551 (18) | 0.0050 (11) | 0.0019 (12) | 0.0018 (12) |
| O1W | 0.0395 (12) | 0.0292 (10) | 0.0942 (18) | −0.0035 (8) | −0.0148 (11) | 0.0009 (11) |
| O1—C1 | 1.232 (3) | C2—C3 | 1.367 (3) |
| O3—C5 | 1.299 (3) | C2—C1 | 1.489 (3) |
| O3—H3 | 0.861 (10) | C3—C5 | 1.484 (3) |
| N2—C4 | 1.329 (3) | C4—C6 | 1.481 (3) |
| N2—C3 | 1.373 (3) | C5—O4 | 1.212 (3) |
| N2—H2 | 0.8600 | C6—H6A | 0.9600 |
| O2—C1 | 1.271 (3) | C6—H6B | 0.9600 |
| N1—C4 | 1.325 (3) | C6—H6C | 0.9600 |
| N1—C2 | 1.373 (3) | O1W—H1WA | 0.849 (10) |
| N1—H1 | 0.8600 | O1W—H1WB | 0.850 (10) |
| C5—O3—H3 | 112 (2) | O2—C1—C2 | 117.2 (2) |
| C4—N2—C3 | 109.54 (19) | N1—C4—N2 | 107.8 (2) |
| C4—N2—H2 | 125.2 | N1—C4—C6 | 126.1 (2) |
| C3—N2—H2 | 125.2 | N2—C4—C6 | 126.2 (2) |
| C4—N1—C2 | 109.81 (19) | O4—C5—O3 | 123.6 (2) |
| C4—N1—H1 | 125.1 | O4—C5—C3 | 120.0 (2) |
| C2—N1—H1 | 125.1 | O3—C5—C3 | 116.4 (2) |
| C3—C2—N1 | 106.37 (19) | C4—C6—H6A | 109.5 |
| C3—C2—C1 | 132.4 (2) | C4—C6—H6B | 109.5 |
| N1—C2—C1 | 121.2 (2) | H6A—C6—H6B | 109.5 |
| C2—C3—N2 | 106.5 (2) | C4—C6—H6C | 109.5 |
| C2—C3—C5 | 132.1 (2) | H6A—C6—H6C | 109.5 |
| N2—C3—C5 | 121.3 (2) | H6B—C6—H6C | 109.5 |
| O1—C1—O2 | 125.4 (2) | H1WA—O1W—H1WB | 110 (2) |
| O1—C1—C2 | 117.4 (2) | ||
| C4—N1—C2—C3 | 0.1 (3) | C3—C2—C1—O2 | 1.2 (4) |
| C4—N1—C2—C1 | 179.5 (2) | N1—C2—C1—O2 | −178.0 (2) |
| N1—C2—C3—N2 | 0.0 (2) | C2—N1—C4—N2 | −0.1 (3) |
| C1—C2—C3—N2 | −179.3 (2) | C2—N1—C4—C6 | −178.7 (2) |
| N1—C2—C3—C5 | −179.6 (2) | C3—N2—C4—N1 | 0.1 (3) |
| C1—C2—C3—C5 | 1.1 (4) | C3—N2—C4—C6 | 178.7 (2) |
| C4—N2—C3—C2 | −0.1 (3) | C2—C3—C5—O4 | 178.1 (3) |
| C4—N2—C3—C5 | 179.6 (2) | N2—C3—C5—O4 | −1.4 (4) |
| C3—C2—C1—O1 | −178.9 (2) | C2—C3—C5—O3 | −2.3 (4) |
| N1—C2—C1—O1 | 1.9 (3) | N2—C3—C5—O3 | 178.2 (2) |
| H··· | ||||
| O1W—H1WB···O4i | 0.85 (1) | 2.05 (1) | 2.887 (3) | 168 (4) |
| O1W—H1WA···O3ii | 0.85 (1) | 2.00 (1) | 2.839 (3) | 173 (4) |
| N2—H2···O1iii | 0.86 | 1.86 | 2.716 (3) | 176 |
| N1—H1···O1W | 0.86 | 1.83 | 2.689 (3) | 177 |
| O3—H3···O2 | 0.86 (1) | 1.59 (2) | 2.447 (2) | 179 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.85 (1) | 2.05 (1) | 2.887 (3) | 168 (4) |
| O1 | 0.85 (1) | 2.00 (1) | 2.839 (3) | 173 (4) |
| N2—H2⋯O1iii | 0.86 | 1.86 | 2.716 (3) | 176 |
| N1—H1⋯O1 | 0.86 | 1.83 | 2.689 (3) | 177 |
| O3—H3⋯O2 | 0.86 (1) | 1.59 (2) | 2.447 (2) | 179 (3) |
Symmetry codes: (i) ; (ii) ; (iii) .