Literature DB >> 21581665

4-Carb-oxy-2-methyl-1H-imidazol-3-ium-5-carboxyl-ate monohydrate.

Yu-Ping Guo1.   

Abstract

In the title compound, C(6)H(6)N(2)O(4)·H(2)O, one carboxyl group is deprotonated and one imidazole N atom is protonated. The organic mol-ecule, excluding methyl H atoms, is essentially planar, with an r.m.s. deviation of 0.0156 (1) Å. In the crystal structure, inter-molecular N-H⋯O hydrogen bonds link mol-ecules into chains along the b axis; these chains are further linked via O-H⋯O hydrogen bonds involving the water O atoms and carboxyl O atoms, generating a two-dimensional supra-molecular framework.

Entities:  

Year:  2008        PMID: 21581665      PMCID: PMC2967941          DOI: 10.1107/S1600536808040221

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of related structures, see: Sun et al. (2006 ▶); Nie et al. (2007 ▶). For applications as functional materials, see: Liang et al. (2002 ▶); Qin et al. (2002 ▶); Li et al. (1998 ▶). For biological activities, see: Ucucu et al. (2001 ▶); Maeda et al. (1984 ▶); Quattara et al. (1987 ▶); Seko et al. (1991 ▶). For the synthesis of the title compound, see: Anderson et al. (1989 ▶).

Experimental

Crystal data

C6H6N2O4·H2O M = 188.14 Monoclinic, a = 8.491 (2) Å b = 14.280 (4) Å c = 6.5385 (17) Å β = 97.386 (5)° V = 786.2 (4) Å3 Z = 4 Mo Kα radiation μ = 0.14 mm−1 T = 295 (2) K 0.23 × 0.09 × 0.08 mm

Data collection

Bruker SMART APEX area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.969, T max = 0.995 4506 measured reflections 1538 independent reflections 1246 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.131 S = 1.05 1538 reflections 128 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808040221/wn2295sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808040221/wn2295Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6N2O4·H2OF(000) = 392
Mr = 188.14Dx = 1.589 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 927 reflections
a = 8.491 (2) Åθ = 2.4–24.3°
b = 14.280 (4) ŵ = 0.14 mm1
c = 6.5385 (17) ÅT = 295 K
β = 97.386 (5)°Block, colorless
V = 786.2 (4) Å30.23 × 0.09 × 0.08 mm
Z = 4
Bruker SMART APEX area-detector diffractometer1538 independent reflections
Radiation source: fine-focus sealed tube1246 reflections with I > 2σ(I)
graphiteRint = 0.032
φ and ω scansθmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→10
Tmin = 0.969, Tmax = 0.995k = −17→17
4506 measured reflectionsl = −8→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0559P)2 + 0.4711P] where P = (Fo2 + 2Fc2)/3
1538 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.25 e Å3
4 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5312 (2)0.88207 (11)0.2430 (3)0.0404 (5)
O30.1439 (2)0.68027 (12)0.1429 (3)0.0430 (5)
H30.191 (3)0.7337 (12)0.157 (5)0.065*
N20.5293 (2)0.56877 (13)0.2531 (3)0.0287 (5)
H20.51260.50940.25010.034*
O20.2822 (2)0.83103 (12)0.1822 (3)0.0436 (5)
N10.6490 (2)0.70121 (13)0.2840 (3)0.0284 (5)
H10.72320.74240.30450.034*
C20.4901 (3)0.72074 (15)0.2375 (3)0.0265 (5)
C30.4139 (3)0.63632 (15)0.2178 (3)0.0265 (5)
C10.4314 (3)0.81906 (15)0.2198 (4)0.0303 (6)
C40.6708 (3)0.60933 (16)0.2927 (4)0.0283 (5)
C50.2437 (3)0.61108 (17)0.1680 (4)0.0335 (6)
O40.2045 (2)0.52952 (12)0.1540 (3)0.0506 (6)
C60.8249 (3)0.56070 (18)0.3429 (4)0.0405 (7)
H6A0.85570.53330.21990.061*
H6B0.81480.51240.44250.061*
H6C0.90430.60490.39870.061*
O1W0.8762 (2)0.83332 (13)0.3359 (4)0.0563 (6)
H1WA0.961 (3)0.827 (2)0.419 (5)0.084*
H1WB0.840 (4)0.8884 (12)0.345 (5)0.084*
U11U22U33U12U13U23
O10.0417 (11)0.0175 (8)0.0613 (13)−0.0014 (7)0.0041 (9)−0.0002 (8)
O30.0293 (10)0.0278 (10)0.0697 (14)−0.0004 (7)−0.0020 (9)0.0000 (9)
N20.0313 (11)0.0172 (9)0.0371 (12)0.0002 (8)0.0025 (9)−0.0009 (8)
O20.0360 (11)0.0272 (9)0.0664 (14)0.0062 (8)0.0025 (9)0.0008 (8)
N10.0287 (11)0.0206 (10)0.0351 (11)−0.0044 (8)0.0016 (8)−0.0009 (8)
C20.0288 (12)0.0229 (11)0.0275 (13)0.0001 (9)0.0028 (10)−0.0002 (9)
C30.0330 (13)0.0200 (11)0.0267 (12)0.0015 (9)0.0042 (10)0.0005 (9)
C10.0380 (14)0.0214 (12)0.0315 (14)0.0013 (10)0.0046 (10)0.0005 (9)
C40.0304 (13)0.0230 (12)0.0311 (13)−0.0008 (9)0.0028 (10)−0.0005 (9)
C50.0307 (13)0.0278 (14)0.0413 (15)−0.0016 (10)0.0023 (11)0.0009 (10)
O40.0399 (11)0.0261 (10)0.0835 (16)−0.0082 (8)−0.0013 (10)−0.0008 (9)
C60.0346 (14)0.0309 (13)0.0551 (18)0.0050 (11)0.0019 (12)0.0018 (12)
O1W0.0395 (12)0.0292 (10)0.0942 (18)−0.0035 (8)−0.0148 (11)0.0009 (11)
O1—C11.232 (3)C2—C31.367 (3)
O3—C51.299 (3)C2—C11.489 (3)
O3—H30.861 (10)C3—C51.484 (3)
N2—C41.329 (3)C4—C61.481 (3)
N2—C31.373 (3)C5—O41.212 (3)
N2—H20.8600C6—H6A0.9600
O2—C11.271 (3)C6—H6B0.9600
N1—C41.325 (3)C6—H6C0.9600
N1—C21.373 (3)O1W—H1WA0.849 (10)
N1—H10.8600O1W—H1WB0.850 (10)
C5—O3—H3112 (2)O2—C1—C2117.2 (2)
C4—N2—C3109.54 (19)N1—C4—N2107.8 (2)
C4—N2—H2125.2N1—C4—C6126.1 (2)
C3—N2—H2125.2N2—C4—C6126.2 (2)
C4—N1—C2109.81 (19)O4—C5—O3123.6 (2)
C4—N1—H1125.1O4—C5—C3120.0 (2)
C2—N1—H1125.1O3—C5—C3116.4 (2)
C3—C2—N1106.37 (19)C4—C6—H6A109.5
C3—C2—C1132.4 (2)C4—C6—H6B109.5
N1—C2—C1121.2 (2)H6A—C6—H6B109.5
C2—C3—N2106.5 (2)C4—C6—H6C109.5
C2—C3—C5132.1 (2)H6A—C6—H6C109.5
N2—C3—C5121.3 (2)H6B—C6—H6C109.5
O1—C1—O2125.4 (2)H1WA—O1W—H1WB110 (2)
O1—C1—C2117.4 (2)
C4—N1—C2—C30.1 (3)C3—C2—C1—O21.2 (4)
C4—N1—C2—C1179.5 (2)N1—C2—C1—O2−178.0 (2)
N1—C2—C3—N20.0 (2)C2—N1—C4—N2−0.1 (3)
C1—C2—C3—N2−179.3 (2)C2—N1—C4—C6−178.7 (2)
N1—C2—C3—C5−179.6 (2)C3—N2—C4—N10.1 (3)
C1—C2—C3—C51.1 (4)C3—N2—C4—C6178.7 (2)
C4—N2—C3—C2−0.1 (3)C2—C3—C5—O4178.1 (3)
C4—N2—C3—C5179.6 (2)N2—C3—C5—O4−1.4 (4)
C3—C2—C1—O1−178.9 (2)C2—C3—C5—O3−2.3 (4)
N1—C2—C1—O11.9 (3)N2—C3—C5—O3178.2 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1WB···O4i0.85 (1)2.05 (1)2.887 (3)168 (4)
O1W—H1WA···O3ii0.85 (1)2.00 (1)2.839 (3)173 (4)
N2—H2···O1iii0.861.862.716 (3)176
N1—H1···O1W0.861.832.689 (3)177
O3—H3···O20.86 (1)1.59 (2)2.447 (2)179 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WB⋯O4i0.85 (1)2.05 (1)2.887 (3)168 (4)
O1W—H1WA⋯O3ii0.85 (1)2.00 (1)2.839 (3)173 (4)
N2—H2⋯O1iii0.861.862.716 (3)176
N1—H1⋯O1W0.861.832.689 (3)177
O3—H3⋯O20.86 (1)1.59 (2)2.447 (2)179 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

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1.  5-Carb-oxy-2-isopropyl-1H-imidazol-3-ium-4-carboxyl-ate monohydrate.

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Authors:  Sean J Martens; David K Geiger
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  2 in total

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