Literature DB >> 21837123

Ortho-rhom-bic polymorph of (6,7-dimeth-oxy-1,2,3,4-tetra-hydro-isoquinolin-1-yl)methanol.

Aouicha Elkhamlichi, Mohammed Lachkar, Brahim El Bali, Michal Dusek, Karla Fejfarova.   

Abstract

The asymmetric unit of the title compound, C(12)H(17)NO(3), contains two mol-ecules with different conformations. It is a polymorph of the monoclinic form [El Antri et al. (2004 ▶). Mol-ecules, 9, 650-657]; the samples were crystallized at different temperatures from the same solvent. In both structures, mol-ecules are linked by O-H⋯N hydrogen bonds, forming chains. The conformations of the chains and their packing differ markedly in the two polymorphs.

Entities:  

Year:  2011        PMID: 21837123      PMCID: PMC3151966          DOI: 10.1107/S1600536811019866

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to polymorphism in drugs, see: Brittan (1999 ▶); Bernstein (2002 ▶). For background to alkaloids and their pharmaceutical properties, see: Bently (1998 ▶); Herbert (1985 ▶). Kitamura et al. (1994 ▶); He et al. (2000 ▶); Gray et al. (1989 ▶). For natural-product isolation techniques, see: Dalton (1979 ▶). For the monoclinic polymorph, see: El Antri et al. (2004 ▶).

Experimental

Crystal data

C12H17NO3 M = 223.27 Orthorhombic, a = 8.9917 (11) Å b = 13.4769 (12) Å c = 18.576 (4) Å V = 2251.0 (6) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.51 × 0.35 × 0.32 mm

Data collection

Oxford Diffraction Xcalibur 2 diffractometer with a Sapphire 2 CCD detector 30187 measured reflections 2679 independent reflections 1515 reflections with I > 3σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.091 S = 1.15 2679 reflections 301 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2005 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2005 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2006 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶) and COOT (Emsley et al., 2010 ▶); software used to prepare material for publication: JANA2006. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811019866/hb5884sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019866/hb5884Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811019866/hb5884Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H17NO3F(000) = 960
Mr = 223.27Dx = 1.317 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71069 Å
Hall symbol: P 2ac 2abCell parameters from 9027 reflections
a = 8.9917 (11) Åθ = 2.5–26.5°
b = 13.4769 (12) ŵ = 0.09 mm1
c = 18.576 (4) ÅT = 150 K
V = 2251.0 (6) Å3Irregular, colorless
Z = 80.51 × 0.35 × 0.32 mm
Oxford Diffraction Xcalibur 2 diffractometer with a Sapphire 2 CCD detector1515 reflections with I > 3σ(I)
Radiation source: X-ray tubeRint = 0.054
graphiteθmax = 26.6°, θmin = 2.5°
Detector resolution: 8.3438 pixels mm-1h = −11→11
Rotation method data acquisition using ω scansk = −16→16
30187 measured reflectionsl = −23→23
2679 independent reflections
Refinement on F2124 constraints
R[F2 > 2σ(F2)] = 0.041H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.091Weighting scheme based on measured s.u.'s w = 1/[σ2(I) + 0.0016I2]
S = 1.15(Δ/σ)max = 0.004
2679 reflectionsΔρmax = 0.24 e Å3
301 parametersΔρmin = −0.15 e Å3
0 restraints
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
O10.2415 (2)0.53891 (18)0.36542 (11)0.0430 (7)
O20.4410 (2)0.45708 (14)0.02813 (11)0.0351 (7)
O30.6069 (2)0.30148 (13)0.02562 (11)0.0333 (7)
O40.2946 (2)−0.04072 (18)0.15204 (13)0.0501 (8)
O50.0403 (2)0.05130 (14)0.48188 (10)0.0355 (7)
O6−0.0888 (2)0.22154 (13)0.47614 (11)0.0369 (7)
N10.4198 (3)0.37470 (18)0.34959 (13)0.0347 (9)
N20.0505 (3)0.09105 (18)0.15335 (14)0.0377 (10)
C10.3258 (4)0.4076 (2)0.28954 (16)0.0375 (11)
C20.4044 (3)0.3779 (2)0.21914 (17)0.0319 (10)
C30.3811 (3)0.4319 (2)0.15544 (16)0.0335 (10)
C40.4524 (3)0.4070 (2)0.09213 (16)0.0298 (10)
C50.5455 (3)0.3232 (2)0.09070 (15)0.0281 (10)
C60.5657 (3)0.2694 (2)0.15306 (16)0.0291 (10)
C70.4979 (3)0.2972 (2)0.21772 (17)0.0301 (10)
C80.5328 (3)0.2388 (2)0.28580 (16)0.0344 (11)
C90.4336 (3)0.2665 (2)0.34811 (16)0.0349 (11)
C100.3029 (4)0.5168 (2)0.29733 (16)0.0437 (12)
C110.3469 (3)0.5421 (2)0.02716 (16)0.0416 (11)
C120.7128 (4)0.2228 (2)0.02437 (17)0.0428 (12)
C130.1076 (3)0.0400 (2)0.21832 (16)0.0370 (10)
C140.0628 (3)0.09610 (19)0.28544 (16)0.0300 (10)
C150.0789 (3)0.0489 (2)0.35197 (16)0.0335 (10)
C160.0308 (3)0.0923 (2)0.41458 (15)0.0272 (10)
C17−0.0383 (3)0.1861 (2)0.41197 (16)0.0300 (10)
C18−0.0500 (3)0.2338 (2)0.34686 (16)0.0310 (11)
C190.0006 (3)0.1904 (2)0.28279 (16)0.0288 (10)
C20−0.0159 (3)0.2449 (2)0.21245 (16)0.0355 (11)
C210.0785 (3)0.1987 (2)0.15450 (16)0.0390 (12)
C220.2709 (3)0.0187 (2)0.21388 (17)0.0437 (11)
C230.1144 (4)−0.0419 (2)0.48738 (16)0.0497 (12)
C24−0.1827 (4)0.3079 (2)0.47324 (17)0.0472 (12)
H10.2292840.3771240.2891740.045*
H30.3141060.4873790.1559360.0402*
H60.6278740.2114780.152060.0349*
H8a0.5235190.1691030.2761830.0413*
H8b0.6348490.2492680.2989960.0413*
H9a0.3371090.2373860.3413660.0419*
H9b0.4776120.2440050.3922660.0419*
H10a0.3964960.5502780.2921310.0524*
H10b0.2370130.5397160.260240.0524*
H11a0.3432520.568724−0.0207290.0499*
H11b0.2486010.5234340.0420670.0499*
H11c0.385540.5913090.0594870.0499*
H12a0.7526350.216224−0.0233330.0513*
H12b0.7918820.2373080.0574580.0513*
H12c0.6651960.1619520.0381520.0513*
H130.061923−0.0242140.2210650.0444*
H150.124753−0.0154230.3539110.0402*
H18−0.0939880.2986190.3451990.0372*
H20a0.0126090.313020.2188230.0425*
H20b−0.1183210.2440510.1978350.0425*
H21a0.0524860.2267070.108690.0468*
H21b0.1815880.2106290.1647280.0468*
H22a0.3246530.079890.2089950.0524*
H22b0.301603−0.0171430.2560050.0524*
H23a0.120147−0.0612260.5370460.0597*
H23b0.059956−0.0910760.460860.0597*
H23c0.212938−0.0361440.4679550.0597*
H24a−0.2147120.3248310.5209830.0566*
H24b−0.1279920.362430.4530420.0566*
H24c−0.2678760.2941930.4437450.0566*
H1n0.374 (3)0.391 (2)0.3865 (16)0.0416*
H2n0.100 (3)0.065 (2)0.1185 (16)0.0452*
H1o0.150 (3)0.547 (3)0.3609 (18)0.0516*
H4o0.378 (4)−0.059 (3)0.153 (2)0.0601*
U11U22U33U12U13U23
O10.0483 (13)0.0424 (12)0.0382 (13)0.0103 (13)0.0071 (12)−0.0063 (11)
O20.0428 (12)0.0309 (11)0.0314 (12)0.0109 (11)−0.0027 (11)0.0004 (10)
O30.0382 (12)0.0343 (11)0.0275 (12)0.0090 (10)0.0026 (11)−0.0006 (10)
O40.0534 (16)0.0548 (14)0.0420 (13)0.0117 (14)0.0041 (13)−0.0150 (13)
O50.0462 (13)0.0283 (11)0.0320 (12)0.0061 (10)−0.0031 (11)0.0022 (10)
O60.0453 (13)0.0380 (12)0.0275 (12)0.0155 (11)−0.0011 (12)−0.0016 (10)
N10.0477 (18)0.0299 (14)0.0266 (16)0.0080 (14)0.0035 (15)−0.0023 (12)
N20.0456 (18)0.0375 (16)0.0300 (17)−0.0004 (14)0.0011 (14)−0.0043 (13)
C10.046 (2)0.0340 (18)0.0328 (18)0.0017 (16)0.0025 (18)0.0002 (15)
C20.0337 (18)0.0305 (16)0.0316 (18)0.0013 (15)−0.0035 (17)−0.0027 (14)
C30.0390 (18)0.0272 (17)0.0345 (19)0.0111 (14)−0.0050 (16)−0.0048 (15)
C40.0337 (17)0.0296 (17)0.0261 (18)0.0010 (15)−0.0089 (16)−0.0028 (14)
C50.0261 (17)0.0301 (17)0.0281 (19)0.0014 (15)−0.0033 (16)−0.0054 (14)
C60.0291 (18)0.0274 (15)0.0307 (19)0.0043 (15)−0.0019 (17)−0.0025 (15)
C70.0340 (17)0.0262 (16)0.0301 (18)0.0008 (14)0.0000 (18)−0.0002 (15)
C80.045 (2)0.0289 (17)0.0292 (18)0.0029 (15)−0.0014 (18)−0.0017 (14)
C90.041 (2)0.0311 (17)0.032 (2)0.0008 (16)−0.0043 (18)0.0029 (14)
C100.049 (2)0.044 (2)0.039 (2)0.0104 (17)0.0029 (17)0.0029 (16)
C110.055 (2)0.0323 (17)0.0374 (19)0.0135 (17)−0.0089 (17)0.0043 (17)
C120.050 (2)0.049 (2)0.0290 (17)0.0168 (18)0.0033 (18)−0.0008 (16)
C130.0417 (19)0.0336 (17)0.0356 (19)0.0008 (16)0.0005 (17)−0.0030 (17)
C140.0317 (17)0.0310 (16)0.0272 (18)0.0030 (15)0.0000 (16)−0.0032 (14)
C150.0362 (18)0.0256 (16)0.0387 (19)−0.0008 (16)−0.0033 (16)−0.0024 (15)
C160.0289 (17)0.0273 (16)0.0253 (18)−0.0026 (14)−0.0006 (15)0.0013 (13)
C170.0336 (18)0.0280 (17)0.0283 (19)−0.0001 (15)−0.0018 (16)−0.0026 (14)
C180.0345 (19)0.0255 (16)0.033 (2)−0.0016 (15)−0.0054 (17)−0.0031 (15)
C190.0284 (17)0.0314 (17)0.0266 (17)−0.0034 (14)−0.0029 (17)0.0013 (15)
C200.038 (2)0.0336 (17)0.034 (2)−0.0040 (15)−0.0028 (18)0.0034 (15)
C210.039 (2)0.046 (2)0.032 (2)−0.0051 (18)−0.0013 (18)0.0079 (15)
C220.046 (2)0.047 (2)0.0387 (18)0.0051 (17)0.0048 (18)−0.0078 (18)
C230.076 (3)0.0306 (17)0.042 (2)0.0087 (19)−0.005 (2)0.0031 (16)
C240.054 (2)0.050 (2)0.0378 (19)0.0244 (19)−0.001 (2)−0.0094 (17)
O1—C101.412 (4)C9—H9b0.96
O1—H1o0.83 (3)C10—H10a0.96
O2—C41.371 (4)C10—H10b0.96
O2—C111.424 (4)C11—H11a0.96
O3—C51.361 (4)C11—H11b0.96
O3—C121.425 (4)C11—H11c0.96
O4—C221.416 (4)C12—H12a0.96
O4—H4o0.79 (3)C12—H12b0.96
O5—C161.369 (3)C12—H12c0.96
O5—C231.425 (4)C13—C141.513 (4)
O6—C171.362 (4)C13—C221.498 (4)
O6—C241.439 (4)C13—H130.96
N1—C11.468 (4)C14—C151.398 (4)
N1—C91.464 (4)C14—C191.389 (4)
N1—H1n0.83 (3)C15—C161.372 (4)
N2—C131.481 (4)C15—H150.96
N2—C211.472 (4)C16—C171.408 (4)
N2—H2n0.86 (3)C17—C181.374 (4)
C1—C21.539 (4)C18—C191.402 (4)
C1—C101.493 (4)C18—H180.96
C1—H10.96C19—C201.507 (4)
C2—C31.405 (4)C20—C211.506 (4)
C2—C71.375 (4)C20—H20a0.96
C3—C41.381 (4)C20—H20b0.96
C3—H30.96C21—H21a0.96
C4—C51.406 (4)C21—H21b0.96
C5—C61.379 (4)C22—H22a0.96
C6—C71.398 (4)C22—H22b0.96
C6—H60.96C23—H23a0.96
C7—C81.522 (4)C23—H23b0.96
C8—C91.508 (4)C23—H23c0.96
C8—H8a0.96C24—H24a0.96
C8—H8b0.96C24—H24b0.96
C9—H9a0.96C24—H24c0.96
C10—O1—H1o109 (2)O3—C12—H12a109.4718
C4—O2—C11116.8 (2)O3—C12—H12b109.4712
C5—O3—C12116.5 (2)O3—C12—H12c109.4707
C22—O4—H4o108 (3)H12a—C12—H12b109.4716
C16—O5—C23116.8 (2)H12a—C12—H12c109.4715
C17—O6—C24116.5 (2)H12b—C12—H12c109.4704
C1—N1—C9109.6 (2)N2—C13—C14110.3 (2)
C1—N1—H1n105 (2)N2—C13—C22112.6 (2)
C9—N1—H1n108.6 (19)N2—C13—H13108.2749
C13—N2—C21112.7 (2)C14—C13—C22113.7 (2)
C13—N2—H2n104 (2)C14—C13—H13107.0055
C21—N2—H2n109 (2)C22—C13—H13104.4393
N1—C1—C2107.6 (2)C13—C14—C15118.3 (2)
N1—C1—C10107.7 (2)C13—C14—C19122.3 (3)
N1—C1—H1113.3918C15—C14—C19119.3 (3)
C2—C1—C10113.7 (2)C14—C15—C16121.5 (3)
C2—C1—H1107.3416C14—C15—H15119.2572
C10—C1—H1107.3033C16—C15—H15119.2563
C1—C2—C3120.8 (2)O5—C16—C15125.6 (2)
C1—C2—C7120.2 (3)O5—C16—C17114.9 (2)
C3—C2—C7119.0 (3)C15—C16—C17119.5 (3)
C2—C3—C4121.5 (3)O6—C17—C16115.6 (2)
C2—C3—H3119.2635O6—C17—C18125.5 (3)
C4—C3—H3119.2645C16—C17—C18118.9 (3)
O2—C4—C3125.8 (3)C17—C18—C19121.8 (3)
O2—C4—C5115.0 (2)C17—C18—H18119.0863
C3—C4—C5119.2 (3)C19—C18—H18119.0868
O3—C5—C4115.5 (2)C14—C19—C18118.8 (3)
O3—C5—C6125.4 (2)C14—C19—C20121.1 (3)
C4—C5—C6119.0 (3)C18—C19—C20120.0 (2)
C5—C6—C7121.5 (3)C19—C20—C21111.2 (2)
C5—C6—H6119.2431C19—C20—H20a109.4705
C7—C6—H6119.242C19—C20—H20b109.4713
C2—C7—C6119.7 (3)C21—C20—H20a109.4716
C2—C7—C8121.3 (3)C21—C20—H20b109.4716
C6—C7—C8119.0 (2)H20a—C20—H20b107.6461
C7—C8—C9112.8 (2)N2—C21—C20108.8 (2)
C7—C8—H8a109.4715N2—C21—H21a109.4714
C7—C8—H8b109.4718N2—C21—H21b109.471
C9—C8—H8a109.4708C20—C21—H21a109.4707
C9—C8—H8b109.4709C20—C21—H21b109.4716
H8a—C8—H8b105.924H21a—C21—H21b110.1482
N1—C9—C8108.1 (2)O4—C22—C13107.5 (2)
N1—C9—H9a109.4715O4—C22—H22a109.4708
N1—C9—H9b109.4715O4—C22—H22b109.4708
C8—C9—H9a109.4708C13—C22—H22a109.4715
C8—C9—H9b109.4708C13—C22—H22b109.4715
H9a—C9—H9b110.8097H22a—C22—H22b111.3954
O1—C10—C1110.4 (2)O5—C23—H23a109.471
O1—C10—H10a109.4717O5—C23—H23b109.4715
O1—C10—H10b109.4714O5—C23—H23c109.4711
C1—C10—H10a109.4713H23a—C23—H23b109.4715
C1—C10—H10b109.4709H23a—C23—H23c109.4704
H10a—C10—H10b108.4859H23b—C23—H23c109.4719
O2—C11—H11a109.471O6—C24—H24a109.4707
O2—C11—H11b109.4716O6—C24—H24b109.4717
O2—C11—H11c109.4709O6—C24—H24c109.4719
H11a—C11—H11b109.4714H24a—C24—H24b109.4711
H11a—C11—H11c109.4708H24a—C24—H24c109.4706
H11b—C11—H11c109.4716H24b—C24—H24c109.4714
D—H···AD—HH···AD···AD—H···A
O1—H1o···N2i0.83 (3)1.92 (3)2.740 (4)169 (3)
O4—H4o···N1ii0.79 (3)2.03 (3)2.810 (4)172 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯N2i0.83 (3)1.92 (3)2.740 (4)169 (3)
O4—H4o⋯N1ii0.79 (3)2.03 (3)2.810 (4)172 (4)

Symmetry codes: (i) ; (ii) .

  4 in total

1.  Synthesis and human beta-adrenoceptor activity of 1-(3,5-diiodo-4- methoxybenzyl)-1,2,3,4-tetrahydroisoquinolin-6-ol derivatives in vitro.

Authors:  Y He; V I Nikulin; S S Vansal; D R Feller; D D Miller
Journal:  J Med Chem       Date:  2000-02-24       Impact factor: 7.446

2.  Phencyclidine-like effects of tetrahydroisoquinolines and related compounds.

Authors:  N M Gray; B K Cheng; S J Mick; C M Lair; P C Contreras
Journal:  J Med Chem       Date:  1989-06       Impact factor: 7.446

3.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

4.  Isolation and X-ray crystal structure of tetrahydroisoquinoline alkaloids from Calycotome villosa Subsp. intermedias.

Authors:  Ali El Antri; Ibtissam Messouri; Mohamed Bouktaib; Rachid El Alami; Michael Bolte; Brahim El Bali; Mohammed Lachkar
Journal:  Molecules       Date:  2004-07-31       Impact factor: 4.411

  4 in total

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