Literature DB >> 21837048

Androstane-3β,5α,6β,17β-tetrol tri-hydrate.

L C R Andrade, M J B M de Almeida, J A Paixão, J F S Carvalho, M L Sá E Melo.   

Abstract

The title hydrated tetrol, C(19)H(32)O(4)·3H(2)O, was synthesized by stereoselective reduction of the compound 3β,5α,6β-trihy-droxy-androstan-17-one. All rings are fused trans. The organic mol-ecules are connected head-to-tail along the c axis via O-H⋯O hydrogen bonds. Layers of water mol-ecules in the ab plane inter-connect these chains. A quantum chemical ab initio Roothan Hartree-Fock calculation of the isolated mol-ecule gives values for the mol-ecular geometry close to experimentally determined ones, apart from the C-O bond lengths, whose calculated values are significantly smaller than the measured ones, probably a consequence of the involvement of the C-OH groups in the hydrogen-bonding network.

Entities:  

Year:  2011        PMID: 21837048      PMCID: PMC3151997          DOI: 10.1107/S1600536811021349

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Carvalho, Silva, Moreira et al. (2010 ▶); Carvalho, Silva & Sá e Melo (2010 ▶); Luche et al. (1978 ▶). For related structures, see: Andrade et al. (2011 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For asymmetry parameters, see: Duax & Norton (1975 ▶); Altona et al. (1968 ▶). For reference bond-length data, see: Allen et al. (1987 ▶). For the program GAMESS used to perform the quantum chemical calculations, see: Schmidt et al. (1993 ▶).

Experimental

Crystal data

C19H32O4·3H2O M = 378.49 Triclinic, a = 5.8420 (2) Å b = 7.3366 (2) Å c = 12.7922 (3) Å α = 74.560 (1)° β = 83.091 (1)° γ = 68.930 (1)° V = 492.97 (2) Å3 Z = 1 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.40 × 0.30 × 0.24 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.973, T max = 0.982 14489 measured reflections 2222 independent reflections 2132 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.082 S = 1.05 2222 reflections 259 parameters 9 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811021349/bt5554sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021349/bt5554Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H32O4·3H2OZ = 1
Mr = 378.49F(000) = 208
Triclinic, P1Dx = 1.275 Mg m3
Hall symbol: P 1Melting point: 547 K
a = 5.8420 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.3366 (2) ÅCell parameters from 9795 reflections
c = 12.7922 (3) Åθ = 3.1–27.9°
α = 74.560 (1)°µ = 0.10 mm1
β = 83.091 (1)°T = 293 K
γ = 68.930 (1)°Prism, colourless
V = 492.97 (2) Å30.40 × 0.30 × 0.24 mm
Bruker APEXII CCD area-detector diffractometer2222 independent reflections
Radiation source: fine-focus sealed tube2132 reflections with I > 2σ(I)
graphiteRint = 0.017
φ and ω scansθmax = 27.9°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −7→7
Tmin = 0.973, Tmax = 0.982k = −9→9
14489 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0531P)2 + 0.0525P] where P = (Fo2 + 2Fc2)/3
2222 reflections(Δ/σ)max = 0.001
259 parametersΔρmax = 0.20 e Å3
9 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O30.6825 (3)0.6903 (2)1.01710 (10)0.0341 (3)
H30.58880.68241.06990.051*
O50.5070 (2)0.4040 (2)0.81009 (10)0.0274 (3)
H50.54660.31180.86460.041*
O61.1265 (2)0.3581 (2)0.69231 (12)0.0327 (3)
H61.19570.35620.74490.049*
O170.3382 (3)0.6345 (2)0.18191 (10)0.0322 (3)
H170.23680.74640.18120.048*
C80.7075 (3)0.4785 (2)0.54354 (13)0.0190 (3)
H80.84050.52980.51220.023*
C90.5052 (3)0.6405 (2)0.59165 (13)0.0184 (3)
H90.37620.58360.62160.022*
C100.5997 (3)0.6831 (2)0.68858 (13)0.0189 (3)
C40.7953 (3)0.5133 (3)0.87369 (14)0.0235 (3)
H4A0.85950.38500.92560.028*
H4B0.92710.56780.85180.028*
C50.7073 (3)0.4805 (2)0.77394 (13)0.0200 (3)
C110.3867 (3)0.8294 (3)0.50259 (14)0.0265 (4)
H11A0.50740.89310.47230.032*
H11B0.25340.92390.53460.032*
C130.4866 (3)0.6246 (2)0.36183 (13)0.0203 (3)
C140.5959 (3)0.4377 (2)0.45415 (13)0.0209 (3)
H140.45800.39530.48840.025*
C10.3880 (3)0.8233 (3)0.74519 (14)0.0283 (4)
H1A0.32240.95290.69450.034*
H1B0.25780.76670.76510.034*
C30.5877 (3)0.6566 (3)0.92717 (14)0.0285 (4)
H3A0.46340.59360.95540.034*
C60.9057 (3)0.3161 (2)0.72770 (14)0.0233 (3)
H6A0.94620.18990.78400.028*
C70.8106 (3)0.2850 (2)0.63067 (14)0.0240 (3)
H7A0.68310.22640.65550.029*
H7B0.94340.18980.59880.029*
C20.4682 (4)0.8545 (3)0.84738 (15)0.0326 (4)
H2A0.58310.92680.82660.039*
H2B0.32610.93600.88220.039*
C120.2867 (3)0.7820 (3)0.41083 (14)0.0267 (4)
H12A0.15270.73270.43920.032*
H12B0.22300.90440.35470.032*
C180.6775 (3)0.7118 (3)0.29715 (15)0.0293 (4)
H18A0.79010.61590.26010.044*
H18B0.76580.74050.34570.044*
H18C0.59630.83350.24500.044*
C190.7914 (3)0.7860 (3)0.64653 (14)0.0266 (4)
H19A0.71300.91840.60240.040*
H19B0.91560.70810.60400.040*
H19C0.86540.79610.70690.040*
C170.3951 (3)0.5244 (3)0.29226 (14)0.0262 (4)
H17A0.24860.49750.32810.031*
C150.7529 (4)0.2761 (3)0.39465 (15)0.0302 (4)
H15A0.77370.14200.43940.036*
H15B0.91310.28800.37390.036*
C160.6017 (4)0.3220 (3)0.29381 (17)0.0376 (5)
H16A0.70370.33140.22830.056*
H16B0.53400.21690.29900.056*
OW10.6011 (4)0.1107 (3)1.01617 (15)0.0493 (4)
HW110.607 (7)−0.002 (3)1.021 (3)0.074*
HW120.468 (5)0.163 (6)1.045 (3)0.074*
OW20.1512 (3)0.3921 (3)0.09832 (16)0.0519 (4)
HW210.186 (7)0.466 (5)0.128 (3)0.078*
HW220.042 (6)0.488 (5)0.067 (3)0.078*
OW30.0382 (5)1.0250 (4)0.1259 (2)0.0762 (7)
HW31−0.074 (7)1.048 (8)0.088 (4)0.114*
HW320.074 (9)1.124 (6)0.124 (4)0.114*
U11U22U33U12U13U23
O30.0427 (8)0.0482 (8)0.0175 (6)−0.0188 (7)−0.0037 (5)−0.0118 (6)
O50.0313 (7)0.0332 (7)0.0210 (6)−0.0191 (6)−0.0032 (5)0.0002 (5)
O60.0222 (6)0.0420 (8)0.0344 (7)−0.0078 (6)−0.0039 (5)−0.0129 (6)
O170.0371 (7)0.0358 (7)0.0209 (6)−0.0056 (6)−0.0087 (5)−0.0087 (5)
C80.0199 (7)0.0185 (8)0.0183 (7)−0.0047 (6)−0.0020 (6)−0.0058 (6)
C90.0200 (7)0.0207 (8)0.0148 (7)−0.0058 (6)−0.0022 (6)−0.0055 (6)
C100.0209 (7)0.0195 (8)0.0160 (6)−0.0053 (6)−0.0032 (6)−0.0047 (6)
C40.0259 (8)0.0263 (9)0.0183 (7)−0.0089 (7)−0.0057 (6)−0.0033 (6)
C50.0220 (8)0.0226 (8)0.0174 (7)−0.0103 (7)−0.0022 (6)−0.0037 (6)
C110.0323 (9)0.0218 (8)0.0200 (8)0.0007 (7)−0.0083 (7)−0.0069 (7)
C130.0207 (7)0.0232 (8)0.0164 (7)−0.0049 (6)−0.0025 (6)−0.0063 (6)
C140.0229 (8)0.0214 (8)0.0193 (7)−0.0068 (7)−0.0018 (6)−0.0069 (6)
C10.0283 (9)0.0310 (10)0.0220 (8)−0.0006 (8)−0.0056 (7)−0.0118 (7)
C30.0307 (9)0.0420 (11)0.0185 (8)−0.0157 (8)−0.0036 (7)−0.0107 (7)
C60.0265 (9)0.0190 (8)0.0210 (7)−0.0040 (7)−0.0076 (6)−0.0016 (6)
C70.0291 (9)0.0182 (8)0.0234 (8)−0.0033 (7)−0.0071 (6)−0.0066 (6)
C20.0360 (10)0.0354 (11)0.0238 (8)−0.0019 (8)−0.0052 (8)−0.0154 (8)
C120.0249 (8)0.0302 (9)0.0200 (8)0.0007 (7)−0.0065 (6)−0.0092 (7)
C180.0314 (9)0.0339 (10)0.0243 (9)−0.0149 (8)−0.0006 (7)−0.0050 (7)
C190.0348 (9)0.0245 (9)0.0245 (8)−0.0157 (7)−0.0044 (7)−0.0033 (7)
C170.0288 (8)0.0328 (10)0.0198 (8)−0.0113 (7)−0.0026 (6)−0.0089 (7)
C150.0393 (10)0.0234 (9)0.0251 (8)−0.0024 (8)−0.0064 (7)−0.0104 (7)
C160.0535 (12)0.0304 (10)0.0286 (9)−0.0064 (9)−0.0088 (8)−0.0145 (8)
OW10.0636 (11)0.0451 (10)0.0416 (9)−0.0261 (9)−0.0069 (8)−0.0015 (7)
OW20.0525 (10)0.0546 (11)0.0552 (11)−0.0203 (9)−0.0148 (8)−0.0151 (8)
OW30.0667 (14)0.0515 (12)0.107 (2)−0.0064 (11)−0.0284 (13)−0.0217 (12)
O3—C31.4473 (18)C1—C21.538 (2)
O3—H30.8200C1—H1A0.9700
O5—C51.4496 (19)C1—H1B0.9700
O5—H50.8200C3—C21.513 (3)
O6—C61.426 (2)C3—H3A0.9800
O6—H60.8200C6—C71.520 (2)
O17—C171.438 (2)C6—H6A0.9800
O17—H170.8200C7—H7A0.9700
C8—C141.5248 (19)C7—H7B0.9700
C8—C71.525 (2)C2—H2A0.9700
C8—C91.547 (2)C2—H2B0.9700
C8—H80.9800C12—H12A0.9700
C9—C111.535 (2)C12—H12B0.9700
C9—C101.5603 (18)C18—H18A0.9600
C9—H90.9800C18—H18B0.9600
C10—C191.537 (2)C18—H18C0.9600
C10—C11.542 (2)C19—H19A0.9600
C10—C51.557 (2)C19—H19B0.9600
C4—C31.520 (3)C19—H19C0.9600
C4—C51.537 (2)C17—C161.537 (3)
C4—H4A0.9700C17—H17A0.9800
C4—H4B0.9700C15—C161.545 (2)
C5—C61.535 (2)C15—H15A0.9700
C11—C121.539 (2)C15—H15B0.9700
C11—H11A0.9700C16—H16A0.9700
C11—H11B0.9700C16—H16B0.9700
C13—C121.527 (2)OW1—HW110.802 (19)
C13—C181.532 (2)OW1—HW120.820 (19)
C13—C171.537 (2)OW2—HW210.825 (19)
C13—C141.540 (2)OW2—HW220.809 (19)
C14—C151.535 (2)OW3—HW310.81 (2)
C14—H140.9800OW3—HW320.82 (2)
C3—O3—H3109.5O3—C3—H3A108.6
C5—O5—H5109.5C2—C3—H3A108.6
C6—O6—H6109.5C4—C3—H3A108.6
C17—O17—H17109.5O6—C6—C7106.88 (14)
C14—C8—C7110.14 (12)O6—C6—C5114.35 (13)
C14—C8—C9108.20 (12)C7—C6—C5110.36 (13)
C7—C8—C9111.03 (13)O6—C6—H6A108.4
C14—C8—H8109.1C7—C6—H6A108.4
C7—C8—H8109.1C5—C6—H6A108.4
C9—C8—H8109.1C6—C7—C8113.45 (13)
C11—C9—C8111.15 (13)C6—C7—H7A108.9
C11—C9—C10114.18 (13)C8—C7—H7A108.9
C8—C9—C10111.71 (12)C6—C7—H7B108.9
C11—C9—H9106.4C8—C7—H7B108.9
C8—C9—H9106.4H7A—C7—H7B107.7
C10—C9—H9106.4C3—C2—C1111.83 (15)
C19—C10—C1108.27 (14)C3—C2—H2A109.2
C19—C10—C5111.98 (13)C1—C2—H2A109.2
C1—C10—C5107.37 (13)C3—C2—H2B109.2
C19—C10—C9109.47 (13)C1—C2—H2B109.2
C1—C10—C9111.07 (13)H2A—C2—H2B107.9
C5—C10—C9108.69 (12)C13—C12—C11111.20 (14)
C3—C4—C5111.29 (14)C13—C12—H12A109.4
C3—C4—H4A109.4C11—C12—H12A109.4
C5—C4—H4A109.4C13—C12—H12B109.4
C3—C4—H4B109.4C11—C12—H12B109.4
C5—C4—H4B109.4H12A—C12—H12B108.0
H4A—C4—H4B108.0C13—C18—H18A109.5
O5—C5—C6105.43 (13)C13—C18—H18B109.5
O5—C5—C4107.34 (13)H18A—C18—H18B109.5
C6—C5—C4111.83 (13)C13—C18—H18C109.5
O5—C5—C10106.41 (12)H18A—C18—H18C109.5
C6—C5—C10114.03 (12)H18B—C18—H18C109.5
C4—C5—C10111.26 (12)C10—C19—H19A109.5
C9—C11—C12112.56 (14)C10—C19—H19B109.5
C9—C11—H11A109.1H19A—C19—H19B109.5
C12—C11—H11A109.1C10—C19—H19C109.5
C9—C11—H11B109.1H19A—C19—H19C109.5
C12—C11—H11B109.1H19B—C19—H19C109.5
H11A—C11—H11B107.8O17—C17—C16109.69 (14)
C12—C13—C18110.92 (15)O17—C17—C13116.41 (15)
C12—C13—C17115.43 (13)C16—C17—C13105.03 (14)
C18—C13—C17109.95 (14)O17—C17—H17A108.5
C12—C13—C14108.13 (13)C16—C17—H17A108.5
C18—C13—C14113.66 (13)C13—C17—H17A108.5
C17—C13—C1498.26 (13)C14—C15—C16103.10 (15)
C8—C14—C15119.76 (14)C14—C15—H15A111.1
C8—C14—C13114.15 (12)C16—C15—H15A111.1
C15—C14—C13103.82 (13)C14—C15—H15B111.1
C8—C14—H14106.0C16—C15—H15B111.1
C15—C14—H14106.0H15A—C15—H15B109.1
C13—C14—H14106.0C17—C16—C15105.92 (14)
C2—C1—C10112.90 (14)C17—C16—H16A110.6
C2—C1—H1A109.0C15—C16—H16A110.6
C10—C1—H1A109.0C17—C16—H16B110.6
C2—C1—H1B109.0C15—C16—H16B110.6
C10—C1—H1B109.0H16A—C16—H16B108.7
H1A—C1—H1B107.8HW11—OW1—HW12104 (4)
O3—C3—C2110.35 (15)HW21—OW2—HW2290 (4)
O3—C3—C4109.14 (14)HW31—OW3—HW32114 (6)
C2—C3—C4111.63 (15)
C14—C8—C9—C11−54.42 (17)C19—C10—C1—C2−64.85 (19)
C7—C8—C9—C11−175.41 (13)C5—C10—C1—C256.22 (19)
C14—C8—C9—C10176.76 (13)C9—C10—C1—C2174.93 (15)
C7—C8—C9—C1055.78 (17)C5—C4—C3—O3−177.17 (13)
C11—C9—C10—C19−59.18 (19)C5—C4—C3—C2−54.92 (19)
C8—C9—C10—C1968.02 (17)O5—C5—C6—O6−176.93 (13)
C11—C9—C10—C160.3 (2)C4—C5—C6—O6−60.60 (18)
C8—C9—C10—C1−172.47 (13)C10—C5—C6—O666.72 (16)
C11—C9—C10—C5178.24 (14)O5—C5—C6—C762.55 (17)
C8—C9—C10—C5−54.57 (16)C4—C5—C6—C7178.88 (14)
C3—C4—C5—O5−57.61 (18)C10—C5—C6—C7−53.80 (17)
C3—C4—C5—C6−172.78 (14)O6—C6—C7—C8−71.50 (18)
C3—C4—C5—C1058.43 (18)C5—C6—C7—C853.39 (19)
C19—C10—C5—O5177.61 (14)C14—C8—C7—C6−175.01 (14)
C1—C10—C5—O558.90 (15)C9—C8—C7—C6−55.17 (18)
C9—C10—C5—O5−61.33 (15)O3—C3—C2—C1174.34 (15)
C19—C10—C5—C6−66.61 (16)C4—C3—C2—C152.8 (2)
C1—C10—C5—C6174.68 (13)C10—C1—C2—C3−55.1 (2)
C9—C10—C5—C654.45 (16)C18—C13—C12—C11−69.96 (18)
C19—C10—C5—C461.00 (17)C17—C13—C12—C11164.15 (15)
C1—C10—C5—C4−57.72 (16)C14—C13—C12—C1155.30 (19)
C9—C10—C5—C4−177.94 (14)C9—C11—C12—C13−55.6 (2)
C8—C9—C11—C1254.8 (2)C12—C13—C17—O1781.80 (19)
C10—C9—C11—C12−177.68 (14)C18—C13—C17—O17−44.6 (2)
C7—C8—C14—C15−56.0 (2)C14—C13—C17—O17−163.54 (14)
C9—C8—C14—C15−177.54 (15)C12—C13—C17—C16−156.68 (16)
C7—C8—C14—C13−179.93 (14)C18—C13—C17—C1676.94 (18)
C9—C8—C14—C1358.54 (17)C14—C13—C17—C16−42.02 (17)
C12—C13—C14—C8−59.23 (17)C8—C14—C15—C16−165.07 (15)
C18—C13—C14—C864.39 (18)C13—C14—C15—C16−36.31 (18)
C17—C13—C14—C8−179.50 (13)O17—C17—C16—C15146.74 (16)
C12—C13—C14—C15168.66 (14)C13—C17—C16—C1520.9 (2)
C18—C13—C14—C15−67.72 (17)C14—C15—C16—C179.3 (2)
C17—C13—C14—C1548.38 (16)C19—C10—C13—C182.85 (14)
D—H···AD—HH···AD···AD—H···A
O3—H3···O17i0.821.982.787 (2)169.
O5—H5···OW10.822.082.891 (2)170.
O6—H6···O5ii0.822.262.9897 (16)149.
O17—H17···OW30.821.942.718 (3)159.
OW1—HW11···O3iii0.80 (2)2.15 (2)2.944 (2)170 (4)
OW1—HW12···OW2i0.82 (2)2.19 (2)2.977 (3)160 (4)
OW2—HW21···O170.83 (2)2.05 (2)2.862 (2)168 (4)
OW2—HW22···O3iv0.81 (2)2.14 (2)2.921 (2)161 (4)
OW3—HW31···OW1v0.81 (2)2.05 (2)2.850 (3)169 (5)
OW3—HW32···OW2vi0.82 (2)2.11 (2)2.921 (3)173 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O17i0.821.982.787 (2)169
O5—H5⋯OW10.822.082.891 (2)170
O6—H6⋯O5ii0.822.262.9897 (16)149
O17—H17⋯OW30.821.942.718 (3)159
OW1—HW11⋯O3iii0.80 (2)2.15 (2)2.944 (2)170 (4)
OW1—HW12⋯OW2i0.82 (2)2.19 (2)2.977 (3)160 (4)
OW2—HW21⋯O170.83 (2)2.05 (2)2.862 (2)168 (4)
OW2—HW22⋯O3iv0.81 (2)2.14 (2)2.921 (2)161 (4)
OW3—HW31⋯OW1v0.81 (2)2.05 (2)2.850 (3)169 (5)
OW3—HW32⋯OW2vi0.82 (2)2.11 (2)2.921 (3)173 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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