Literature DB >> 21754383

3β,5α,6β-Trihy-droxy-androstan-17-one.

L C R Andrade, M J B M de Almeida, J A Paixão, J F S Carvalho, M L Sá E Melo.   

Abstract

The title compound, C(19)H(30)O(4), is an androstan-17-one derivative synthesized from the dehydro-epiandrosterone through a sequential addition of an oxidant, followed by a trans-diaxial opening of the epoxide generated, with Bi(OTf)(3) (OTf is trifluoro-methane-sulfonate). The six-membered rings have a slightly flattened chair conformation, while the five-membered ring adopts a 14-α envelope conformation. All rings are trans fused. In the crystal, the mol-ecules are connected by O-H⋯O hydrogen bonds involving the hydroxyl and carbonyl groups, forming a three-dimensional network. A quantum mechanical ab initio Roothan Hartree-Fock calculation of the free mol-ecule gives bond lengths, valency angles and ring torsion angles of the free molecule at equilibrium geometry (energy minimum) close to the experimental values.

Entities:  

Year:  2011        PMID: 21754383      PMCID: PMC3089281          DOI: 10.1107/S1600536811011706

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Carvalho et al. (2010b ▶). For 3β,5α,6β-hy­droxy­lation pattern occurance in several natural products, see: Mizushina et al. (1999 ▶); Hata et al. (2002 ▶); Tanaka et al. (2002 ▶); Sun et al. (2006 ▶). For natural products as scaffolds for drug discovery, see: Li & Vederas (2009 ▶); Rosén et al. (2009 ▶). For angiotoxicity of 3β,5α,6β-trihy­droxy steroids, see: Imai et al. (1980 ▶); Peng et al. (1985 ▶). For the in vivo genesis of osteoporosis and atherosclerosis, see: Hongmei et al. (2005 ▶); Imai et al. (1980 ▶); Peng et al. (1985 ▶). For the cytotoxicity of steroids with a 3β,5α,6β-hy­droxy­lation motif against cancer cells, see: Aiello et al. (1995 ▶); Carvalho et al. (2010a ▶); El-Gamal et al. (2004 ▶). For the use of 3β,5α,6β-trihy­droxy steroids in the synthesis of Δ4-3,6-dione steroids. see: Tischler et al. (1988 ▶); Aiello et al. (1991 ▶); Pardo et al. (2000 ▶). For their use as mol­ecular probes for the study of aromatase inhibition, see: Numazawa & Tachibana (1994 ▶); Pérez-Ornelas et al. (2005 ▶); Nagaoka & Numazawa (2004 ▶). For the use of the title compound as an inter­mediate in the synthesis of the aromatase inhibitor androst-4-ene-3,6,17-trione, see: Ehrenstein (1939 ▶); Numazawa et al. (1987 ▶); Anthony et al. (1999 ▶). For related structures, see Anthony et al. (1999 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶) and for asymmetry parameters, see: Duax & Norton (1975 ▶); Altona et al. (1968 ▶). For reference bond-length data, see: Allen et al. (1987 ▶). For the program GAMESS used to perform the quantum chemical calculations, see: Schmidt et al. (1993 ▶).

Experimental

Crystal data

C19H30O4 M = 322.43 Orthorhombic, a = 5.8132 (1) Å b = 13.3880 (3) Å c = 21.3298 (5) Å V = 1660.04 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.23 × 0.13 × 0.13 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.937, T max = 1.00 40718 measured reflections 2276 independent reflections 1874 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.098 S = 1.04 2276 reflections 213 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811011706/bt5502sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811011706/bt5502Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H30O4Dx = 1.290 Mg m3
Mr = 322.43Melting point: 574 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 6253 reflections
a = 5.8132 (1) Åθ = 3.1–30.3°
b = 13.3880 (3) ŵ = 0.09 mm1
c = 21.3298 (5) ÅT = 293 K
V = 1660.04 (6) Å3Prism, colourless
Z = 40.23 × 0.13 × 0.13 mm
F(000) = 704
Bruker APEXII CCD area-detector diffractometer2276 independent reflections
Radiation source: fine-focus sealed tube1874 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 27.9°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −7→6
Tmin = 0.937, Tmax = 1.00k = −17→17
40718 measured reflectionsl = −27→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0563P)2 + 0.2093P] where P = (Fo2 + 2Fc2)/3
2276 reflections(Δ/σ)max < 0.001
213 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.20 e Å3
Experimental. IR (film) 3442, 3348, 2942, 2861, 1723, 1471, 1373, 1077, 1047, 1030, 1001, 960, 874 cm-1; 1H NMR (300 MHz, DMSO-d6) δ p.p.m. 0.77 (3H, s, 18-CH3), 1.04 (3H, s, 19-CH3), 2.36 (1H, dd, J=19.0, 8.2 Hz), 3.35 (1H, m, 6α-H), 3.74 (1H, s, OH), 3.78 (1H, m, 3α-H), 4.22 (1H, d, J=5.8 Hz, OH), 4.51 (1H, d, J=4.3 Hz, OH); 13C NMR (75 MHz, DMSO-d6)δ p.p.m. 13.4, 16.2, 20.0, 21.4 (CH2), 29.6, 31.0 (CH2), 31.5 (CH2), 32.0 (CH2), 33.3 (CH2), 35.3 (CH2), 37.9 (C-10), 40.8 (CH2), 44.8, 47.2 (C-13), 50.5, 65.6, 73.8, 74.3 (C-5), 220.0 (C-17); MS m/z (%): 321.3 (9) [M—H]+, 293.2 (20), 280.4 (23), 265.5 (100), 250.2 (13), 90.3 (54).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O30.4447 (4)0.39692 (11)−0.03066 (6)0.0551 (5)
H30.41760.4562−0.03710.083*
O50.8749 (2)0.26939 (10)0.10844 (6)0.0344 (3)
H50.87880.21980.08600.052*
O60.3172 (3)0.20863 (13)0.18197 (7)0.0490 (4)
H6A0.23720.21820.15090.074*
O171.1224 (3)0.38845 (11)0.44942 (6)0.0396 (4)
C10.7513 (4)0.47124 (14)0.11921 (8)0.0304 (4)
H1A0.75550.53450.14140.036*
H1B0.90850.45270.10930.036*
C20.6166 (4)0.48453 (14)0.05810 (8)0.0358 (5)
H2A0.46420.50980.06760.043*
H2B0.69400.53340.03200.043*
C30.5956 (4)0.38742 (14)0.02260 (8)0.0334 (5)
H3A0.74850.36830.00750.040*
C40.5032 (4)0.30359 (13)0.06337 (8)0.0298 (4)
H4A0.50940.24140.04000.036*
H4B0.34330.31700.07330.036*
C50.6392 (3)0.29152 (13)0.12470 (8)0.0245 (4)
C60.5535 (4)0.20277 (14)0.16369 (9)0.0326 (5)
H60.57430.14190.13880.039*
C70.6922 (4)0.19194 (13)0.22384 (8)0.0333 (5)
H7A0.84780.17180.21330.040*
H7B0.62470.13950.24920.040*
C80.7015 (3)0.28834 (13)0.26229 (8)0.0248 (4)
H80.54540.30490.27620.030*
C90.7942 (3)0.37543 (13)0.22212 (7)0.0226 (4)
H90.94690.35490.20760.027*
C100.6459 (3)0.39125 (12)0.16226 (7)0.0219 (4)
C110.8298 (4)0.47172 (13)0.26035 (8)0.0332 (5)
H11A0.90740.52050.23420.040*
H11B0.68050.49890.27140.040*
C120.9702 (4)0.45672 (14)0.32058 (8)0.0329 (5)
H12A1.12800.44020.31000.039*
H12B0.97120.51810.34480.039*
C130.8657 (3)0.37305 (14)0.35939 (8)0.0267 (4)
C140.8548 (3)0.27739 (13)0.31973 (8)0.0267 (4)
H141.01090.26650.30380.032*
C150.8117 (4)0.19464 (15)0.36767 (9)0.0418 (5)
H15A0.85610.12990.35120.050*
H15B0.65130.19250.38010.050*
C160.9667 (5)0.22585 (15)0.42264 (10)0.0460 (6)
H16A0.89300.21100.46230.055*
H16B1.11260.19080.42090.055*
C171.0028 (4)0.33729 (15)0.41549 (8)0.0307 (4)
C180.6314 (4)0.40438 (18)0.38719 (9)0.0436 (5)
H18A0.65030.46410.41150.065*
H18B0.57390.35190.41350.065*
H18C0.52440.41660.35380.065*
C190.4042 (3)0.42658 (15)0.18101 (9)0.0331 (5)
H19A0.41180.49440.19550.050*
H19B0.34600.38470.21390.050*
H19C0.30380.42270.14540.050*
U11U22U33U12U13U23
O30.0995 (15)0.0344 (8)0.0314 (8)−0.0083 (10)−0.0306 (9)−0.0014 (6)
O50.0335 (7)0.0368 (8)0.0328 (7)0.0077 (6)0.0005 (6)−0.0113 (6)
O60.0397 (8)0.0592 (10)0.0482 (8)−0.0219 (9)−0.0106 (7)0.0154 (8)
O170.0437 (8)0.0463 (8)0.0289 (7)0.0028 (8)−0.0082 (7)−0.0058 (6)
C10.0425 (11)0.0251 (9)0.0235 (9)−0.0085 (9)−0.0074 (8)0.0012 (7)
C20.0548 (13)0.0278 (9)0.0247 (9)−0.0095 (10)−0.0092 (10)0.0023 (8)
C30.0461 (12)0.0328 (10)0.0213 (9)−0.0015 (10)−0.0054 (9)−0.0025 (8)
C40.0398 (10)0.0236 (9)0.0260 (9)−0.0050 (9)−0.0069 (8)−0.0041 (7)
C50.0256 (9)0.0230 (9)0.0250 (8)−0.0013 (8)−0.0021 (7)−0.0039 (7)
C60.0417 (11)0.0227 (9)0.0335 (10)−0.0083 (9)−0.0086 (9)−0.0010 (8)
C70.0468 (12)0.0202 (9)0.0330 (10)−0.0055 (9)−0.0082 (9)0.0033 (7)
C80.0257 (9)0.0237 (8)0.0251 (8)−0.0010 (8)−0.0020 (7)0.0016 (7)
C90.0249 (9)0.0215 (8)0.0213 (8)−0.0010 (7)−0.0017 (7)−0.0010 (7)
C100.0249 (9)0.0193 (8)0.0216 (8)−0.0004 (7)−0.0009 (7)−0.0018 (7)
C110.0504 (13)0.0231 (9)0.0262 (9)−0.0037 (9)−0.0092 (9)−0.0002 (7)
C120.0458 (12)0.0289 (9)0.0240 (9)−0.0060 (9)−0.0066 (9)−0.0018 (7)
C130.0293 (9)0.0294 (9)0.0215 (8)0.0035 (8)−0.0006 (8)−0.0011 (7)
C140.0287 (10)0.0256 (9)0.0258 (8)0.0003 (8)−0.0008 (8)0.0008 (7)
C150.0570 (14)0.0325 (11)0.0359 (10)−0.0053 (11)−0.0098 (10)0.0095 (9)
C160.0661 (16)0.0387 (11)0.0332 (10)0.0014 (12)−0.0136 (11)0.0086 (9)
C170.0310 (10)0.0391 (11)0.0220 (9)0.0048 (9)0.0027 (8)−0.0005 (8)
C180.0364 (11)0.0598 (14)0.0346 (10)0.0160 (11)0.0025 (10)−0.0060 (10)
C190.0303 (11)0.0382 (11)0.0306 (9)0.0076 (9)−0.0034 (9)−0.0043 (8)
O3—C31.441 (2)C8—H80.9800
O3—H30.8200C9—C111.539 (2)
O5—C51.444 (2)C9—C101.555 (2)
O5—H50.8200C9—H90.9800
O6—C61.430 (3)C10—C191.535 (3)
O6—H6A0.8200C11—C121.535 (2)
O17—C171.215 (2)C11—H11A0.9700
C1—C21.531 (2)C11—H11B0.9700
C1—C101.538 (2)C12—C131.520 (3)
C1—H1A0.9700C12—H12A0.9700
C1—H1B0.9700C12—H12B0.9700
C2—C31.510 (3)C13—C171.515 (3)
C2—H2A0.9700C13—C141.536 (2)
C2—H2B0.9700C13—C181.543 (3)
C3—C41.518 (3)C14—C151.528 (2)
C3—H3A0.9800C14—H140.9800
C4—C51.537 (2)C15—C161.537 (3)
C4—H4A0.9700C15—H15A0.9700
C4—H4B0.9700C15—H15B0.9700
C5—C61.533 (3)C16—C171.514 (3)
C5—C101.558 (2)C16—H16A0.9700
C6—C71.522 (3)C16—H16B0.9700
C6—H60.9800C18—H18A0.9600
C7—C81.530 (2)C18—H18B0.9600
C7—H7A0.9700C18—H18C0.9600
C7—H7B0.9700C19—H19A0.9600
C8—C141.522 (2)C19—H19B0.9600
C8—C91.544 (2)C19—H19C0.9600
C3—O3—H3109.5C19—C10—C1107.80 (16)
C5—O5—H5109.5C19—C10—C9109.59 (14)
C6—O6—H6A109.5C1—C10—C9111.35 (14)
C2—C1—C10112.67 (15)C19—C10—C5112.05 (14)
C2—C1—H1A109.1C1—C10—C5107.44 (13)
C10—C1—H1A109.1C9—C10—C5108.61 (13)
C2—C1—H1B109.1C12—C11—C9113.91 (15)
C10—C1—H1B109.1C12—C11—H11A108.8
H1A—C1—H1B107.8C9—C11—H11A108.8
C3—C2—C1111.62 (15)C12—C11—H11B108.8
C3—C2—H2A109.3C9—C11—H11B108.8
C1—C2—H2A109.3H11A—C11—H11B107.7
C3—C2—H2B109.3C13—C12—C11109.85 (16)
C1—C2—H2B109.3C13—C12—H12A109.7
H2A—C2—H2B108.0C11—C12—H12A109.7
O3—C3—C2111.65 (16)C13—C12—H12B109.7
O3—C3—C4107.56 (16)C11—C12—H12B109.7
C2—C3—C4112.23 (14)H12A—C12—H12B108.2
O3—C3—H3A108.4C17—C13—C12116.91 (17)
C2—C3—H3A108.4C17—C13—C14101.13 (14)
C4—C3—H3A108.4C12—C13—C14109.33 (14)
C3—C4—C5112.54 (15)C17—C13—C18104.28 (15)
C3—C4—H4A109.1C12—C13—C18111.22 (17)
C5—C4—H4A109.1C14—C13—C18113.69 (16)
C3—C4—H4B109.1C8—C14—C15120.83 (16)
C5—C4—H4B109.1C8—C14—C13112.78 (14)
H4A—C4—H4B107.8C15—C14—C13104.05 (14)
O5—C5—C6106.23 (15)C8—C14—H14106.1
O5—C5—C4107.77 (14)C15—C14—H14106.1
C6—C5—C4112.08 (14)C13—C14—H14106.1
O5—C5—C10106.01 (13)C14—C15—C16102.55 (16)
C6—C5—C10113.17 (13)C14—C15—H15A111.3
C4—C5—C10111.12 (14)C16—C15—H15A111.3
O6—C6—C7106.51 (16)C14—C15—H15B111.3
O6—C6—C5114.67 (17)C16—C15—H15B111.3
C7—C6—C5111.02 (15)H15A—C15—H15B109.2
O6—C6—H6108.1C17—C16—C15105.81 (17)
C7—C6—H6108.1C17—C16—H16A110.6
C5—C6—H6108.1C15—C16—H16A110.6
C6—C7—C8112.96 (15)C17—C16—H16B110.6
C6—C7—H7A109.0C15—C16—H16B110.6
C8—C7—H7A109.0H16A—C16—H16B108.7
C6—C7—H7B109.0O17—C17—C16125.09 (19)
C8—C7—H7B109.0O17—C17—C13126.38 (17)
H7A—C7—H7B107.8C16—C17—C13108.53 (17)
C14—C8—C7111.77 (14)C13—C18—H18A109.5
C14—C8—C9108.37 (14)C13—C18—H18B109.5
C7—C8—C9110.60 (14)H18A—C18—H18B109.5
C14—C8—H8108.7C13—C18—H18C109.5
C7—C8—H8108.7H18A—C18—H18C109.5
C9—C8—H8108.7H18B—C18—H18C109.5
C11—C9—C8112.67 (13)C10—C19—H19A109.5
C11—C9—C10113.30 (14)C10—C19—H19B109.5
C8—C9—C10111.41 (14)H19A—C19—H19B109.5
C11—C9—H9106.3C10—C19—H19C109.5
C8—C9—H9106.3H19A—C19—H19C109.5
C10—C9—H9106.3H19B—C19—H19C109.5
C10—C1—C2—C3−56.4 (2)O5—C5—C10—C159.79 (17)
C1—C2—C3—O3172.65 (17)C6—C5—C10—C1175.84 (15)
C1—C2—C3—C451.8 (2)C4—C5—C10—C1−57.03 (19)
O3—C3—C4—C5−175.47 (15)O5—C5—C10—C9−60.77 (17)
C2—C3—C4—C5−52.3 (2)C6—C5—C10—C955.28 (19)
C3—C4—C5—O5−60.09 (19)C4—C5—C10—C9−177.60 (14)
C3—C4—C5—C6−176.63 (16)C8—C9—C11—C1250.7 (2)
C3—C4—C5—C1055.7 (2)C10—C9—C11—C12178.37 (16)
O5—C5—C6—O6−177.18 (15)C9—C11—C12—C13−52.8 (2)
C4—C5—C6—O6−59.7 (2)C11—C12—C13—C17170.85 (16)
C10—C5—C6—O666.9 (2)C11—C12—C13—C1456.8 (2)
O5—C5—C6—C762.06 (18)C11—C12—C13—C18−69.57 (19)
C4—C5—C6—C7179.52 (15)C7—C8—C14—C15−55.8 (2)
C10—C5—C6—C7−53.9 (2)C9—C8—C14—C15−177.90 (16)
O6—C6—C7—C8−72.2 (2)C7—C8—C14—C13−179.62 (16)
C5—C6—C7—C853.2 (2)C9—C8—C14—C1358.24 (19)
C6—C7—C8—C14−176.03 (16)C17—C13—C14—C8173.72 (15)
C6—C7—C8—C9−55.2 (2)C12—C13—C14—C8−62.4 (2)
C14—C8—C9—C11−51.4 (2)C18—C13—C14—C862.6 (2)
C7—C8—C9—C11−174.26 (16)C17—C13—C14—C1541.03 (18)
C14—C8—C9—C10179.96 (14)C12—C13—C14—C15164.95 (17)
C7—C8—C9—C1057.1 (2)C18—C13—C14—C15−70.1 (2)
C2—C1—C10—C19−62.94 (19)C8—C14—C15—C16−168.04 (17)
C2—C1—C10—C9176.82 (15)C13—C14—C15—C16−40.2 (2)
C2—C1—C10—C558.0 (2)C14—C15—C16—C1723.2 (2)
C11—C9—C10—C19−62.1 (2)C15—C16—C17—O17−177.7 (2)
C8—C9—C10—C1966.23 (18)C15—C16—C17—C132.2 (2)
C11—C9—C10—C157.1 (2)C12—C13—C17—O1734.9 (3)
C8—C9—C10—C1−174.59 (14)C14—C13—C17—O17153.5 (2)
C11—C9—C10—C5175.23 (15)C18—C13—C17—O17−88.3 (2)
C8—C9—C10—C5−56.48 (18)C12—C13—C17—C16−145.00 (19)
O5—C5—C10—C19178.02 (15)C14—C13—C17—C16−26.4 (2)
C6—C5—C10—C19−65.9 (2)C18—C13—C17—C1691.8 (2)
C4—C5—C10—C1961.19 (19)C19—C10—C13—C181.68 (16)
D—H···AD—HH···AD···AD—H···A
O3—H3···O17i0.822.112.931 (2)175.
O5—H5···O3ii0.821.992.8063 (19)171.
O6—H6A···O5iii0.822.393.120 (2)148.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O17i0.822.112.931 (2)175
O5—H5⋯O3ii0.821.992.8063 (19)171
O6—H6A⋯O5iii0.822.393.120 (2)148

Symmetry codes: (i) ; (ii) ; (iii) .

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