Literature DB >> 21837030

(E)-N'-(2-Hy-droxy-3,5-diiodo-benzyl-idene)nicotinohydrazide acetonitrile monosolvate.

Shan-Shan Sun, Shi-Yong Liu, Ting-Ting Zheng, Xiao-Ling Wang.   

Abstract

In the hydrazone molecule of the title compound, C(13)H(9)I(2)N(3)O(2)·CH(3)CN, the aromatic rings form a dihedral angle of 9.4 (3)°. In the crystal structure, inter-molecular I⋯N inter-actions [3.099 (4) Å] link hydrogen-bonded aggregates of the hydrozone and solvent molecules related by translation along the b axis into chains. An intramolecular O-H⋯N hydrogen bond forms an S(6) ring.

Entities:  

Year:  2011        PMID: 21837030      PMCID: PMC3151945          DOI: 10.1107/S1600536811020770

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of hydrazones recently reported by us, see: Liu & You (2010a ▶,b ▶,c ▶); Liu & Wang (2010a ▶,b ▶; 2011 ▶).

Experimental

Crystal data

C13H9I2N3O2·C2H3N M = 534.09 Monoclinic, a = 11.1347 (13) Å b = 13.3721 (16) Å c = 11.9999 (15) Å β = 104.083 (6)° V = 1733.0 (4) Å3 Z = 4 Mo Kα radiation μ = 3.64 mm−1 T = 298 K 0.23 × 0.22 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.488, T max = 0.529 10053 measured reflections 3546 independent reflections 2730 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.062 S = 1.01 3546 reflections 213 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.37 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811020770/cv5102sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811020770/cv5102Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811020770/cv5102Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H9I2N3O2·C2H3NF(000) = 1008
Mr = 534.09Dx = 2.047 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 11.1347 (13) ÅCell parameters from 2928 reflections
b = 13.3721 (16) Åθ = 2.4–26.0°
c = 11.9999 (15) ŵ = 3.64 mm1
β = 104.083 (6)°T = 298 K
V = 1733.0 (4) Å3Block, colourless
Z = 40.23 × 0.22 × 0.20 mm
Bruker SMART CCD area-detector diffractometer3546 independent reflections
Radiation source: fine-focus sealed tube2730 reflections with I > 2σ(I)
graphiteRint = 0.031
ω scansθmax = 26.4°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −13→13
Tmin = 0.488, Tmax = 0.529k = −15→16
10053 measured reflectionsl = −9→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.062H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0273P)2] where P = (Fo2 + 2Fc2)/3
3546 reflections(Δ/σ)max < 0.001
213 parametersΔρmax = 0.41 e Å3
1 restraintΔρmin = −0.37 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.58225 (2)0.137781 (18)0.14099 (2)0.04871 (9)
I20.97606 (3)0.30924 (2)−0.06800 (2)0.05637 (10)
N10.5759 (3)0.5602 (2)0.1531 (3)0.0441 (8)
N20.5445 (3)0.6581 (2)0.1681 (3)0.0461 (8)
N30.4412 (4)0.9562 (2)0.2073 (3)0.0625 (10)
N40.7239 (4)0.8004 (3)0.0881 (4)0.0773 (12)
O10.5386 (3)0.37009 (19)0.1633 (3)0.0524 (7)
H10.52680.42980.17160.079*
O20.4105 (3)0.6067 (2)0.2699 (3)0.0652 (8)
C10.6974 (3)0.4418 (2)0.0834 (3)0.0375 (8)
C20.6354 (3)0.3585 (3)0.1150 (3)0.0394 (8)
C30.6742 (3)0.2631 (3)0.0952 (3)0.0399 (9)
C40.7714 (3)0.2493 (3)0.0444 (3)0.0413 (9)
H40.79690.18500.03180.050*
C50.8309 (3)0.3311 (3)0.0123 (3)0.0399 (9)
C60.7952 (3)0.4261 (3)0.0316 (3)0.0418 (9)
H60.83640.48050.01010.050*
C70.6612 (3)0.5441 (3)0.1014 (3)0.0440 (9)
H70.70040.59750.07520.053*
C80.4560 (3)0.6742 (3)0.2269 (3)0.0428 (9)
C90.4165 (3)0.7803 (3)0.2325 (3)0.0392 (8)
C100.3099 (4)0.7986 (3)0.2676 (4)0.0538 (10)
H100.26640.74590.28980.065*
C110.2676 (4)0.8956 (3)0.2697 (4)0.0628 (12)
H110.19440.90950.29100.075*
C120.3370 (4)0.9702 (3)0.2396 (4)0.0613 (12)
H120.30921.03550.24190.074*
C130.4789 (4)0.8619 (3)0.2048 (3)0.0518 (10)
H130.55220.85040.18280.062*
C140.8500 (5)0.9474 (3)0.0420 (4)0.0834 (16)
H14A0.88740.9288−0.01910.125*
H14B0.91350.96500.10880.125*
H14C0.79631.00370.01840.125*
C150.7793 (4)0.8646 (3)0.0688 (4)0.0595 (11)
H20.580 (4)0.707 (2)0.135 (3)0.080*
U11U22U33U12U13U23
I10.05615 (17)0.03602 (14)0.06087 (19)−0.00160 (11)0.02760 (13)0.00167 (12)
I20.05261 (17)0.05701 (18)0.0699 (2)0.00518 (13)0.03507 (14)0.00061 (14)
N10.0471 (19)0.0306 (16)0.057 (2)0.0023 (13)0.0177 (16)−0.0047 (14)
N20.052 (2)0.0276 (17)0.064 (2)0.0024 (14)0.0242 (17)−0.0030 (15)
N30.075 (3)0.0336 (18)0.085 (3)0.0053 (17)0.032 (2)−0.0059 (18)
N40.059 (3)0.066 (3)0.115 (4)0.001 (2)0.038 (2)0.005 (3)
O10.0511 (17)0.0445 (15)0.0723 (19)0.0018 (13)0.0359 (14)−0.0019 (15)
O20.072 (2)0.0430 (16)0.094 (2)−0.0027 (15)0.0471 (18)0.0030 (16)
C10.044 (2)0.0317 (19)0.039 (2)−0.0001 (15)0.0135 (16)−0.0021 (15)
C20.040 (2)0.041 (2)0.040 (2)0.0008 (16)0.0158 (17)−0.0008 (17)
C30.048 (2)0.0331 (19)0.042 (2)0.0001 (16)0.0179 (17)0.0019 (16)
C40.049 (2)0.0339 (19)0.046 (2)0.0074 (17)0.0198 (18)−0.0004 (17)
C50.038 (2)0.043 (2)0.042 (2)0.0032 (16)0.0184 (17)−0.0005 (17)
C60.046 (2)0.0345 (19)0.048 (2)−0.0018 (16)0.0172 (18)0.0011 (17)
C70.050 (2)0.0325 (19)0.053 (2)0.0013 (16)0.0198 (19)0.0016 (17)
C80.047 (2)0.035 (2)0.049 (2)−0.0027 (17)0.0179 (19)−0.0044 (17)
C90.042 (2)0.0356 (19)0.044 (2)−0.0013 (15)0.0177 (17)−0.0080 (17)
C100.050 (2)0.047 (2)0.069 (3)−0.0041 (19)0.023 (2)−0.011 (2)
C110.043 (2)0.061 (3)0.088 (3)0.005 (2)0.024 (2)−0.019 (3)
C120.064 (3)0.044 (2)0.076 (3)0.008 (2)0.017 (2)−0.015 (2)
C130.056 (3)0.037 (2)0.070 (3)−0.0006 (18)0.031 (2)−0.005 (2)
C140.114 (4)0.052 (3)0.098 (4)0.001 (3)0.052 (3)0.009 (3)
C150.060 (3)0.054 (3)0.072 (3)0.012 (2)0.030 (2)0.003 (2)
I1—C32.106 (3)C4—H40.9300
I2—C52.094 (3)C5—C61.367 (5)
N1—C71.273 (4)C6—H60.9300
N1—N21.377 (4)C7—H70.9300
N2—C81.362 (5)C8—C91.492 (5)
N2—H20.897 (10)C9—C101.375 (5)
N3—C121.323 (5)C9—C131.377 (5)
N3—C131.332 (5)C10—C111.382 (5)
N4—C151.114 (5)C10—H100.9300
O1—C21.351 (4)C11—C121.364 (6)
O1—H10.8200C11—H110.9300
O2—C81.210 (4)C12—H120.9300
C1—C61.395 (5)C13—H130.9300
C1—C21.411 (5)C14—C151.440 (6)
C1—C71.457 (5)C14—H14A0.9600
C2—C31.385 (5)C14—H14B0.9600
C3—C41.377 (5)C14—H14C0.9600
C4—C51.382 (5)
C7—N1—N2117.9 (3)C1—C7—H7120.1
C8—N2—N1117.2 (3)O2—C8—N2122.3 (3)
C8—N2—H2124 (3)O2—C8—C9122.1 (3)
N1—N2—H2118 (3)N2—C8—C9115.6 (3)
C12—N3—C13116.4 (4)C10—C9—C13117.2 (3)
C2—O1—H1109.5C10—C9—C8118.0 (3)
C6—C1—C2119.1 (3)C13—C9—C8124.8 (3)
C6—C1—C7118.8 (3)C9—C10—C11119.8 (4)
C2—C1—C7122.1 (3)C9—C10—H10120.1
O1—C2—C3119.6 (3)C11—C10—H10120.1
O1—C2—C1121.2 (3)C12—C11—C10117.6 (4)
C3—C2—C1119.2 (3)C12—C11—H11121.2
C4—C3—C2120.7 (3)C10—C11—H11121.2
C4—C3—I1119.6 (3)N3—C12—C11124.7 (4)
C2—C3—I1119.7 (3)N3—C12—H12117.7
C3—C4—C5120.0 (3)C11—C12—H12117.7
C3—C4—H4120.0N3—C13—C9124.4 (4)
C5—C4—H4120.0N3—C13—H13117.8
C6—C5—C4120.6 (3)C9—C13—H13117.8
C6—C5—I2119.8 (3)C15—C14—H14A109.5
C4—C5—I2119.6 (3)C15—C14—H14B109.5
C5—C6—C1120.5 (3)H14A—C14—H14B109.5
C5—C6—H6119.8C15—C14—H14C109.5
C1—C6—H6119.8H14A—C14—H14C109.5
N1—C7—C1119.8 (3)H14B—C14—H14C109.5
N1—C7—H7120.1N4—C15—C14179.2 (6)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.862.584 (4)147.
N2—H2···N40.90 (1)2.22 (2)3.076 (5)160 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.862.584 (4)147
N2—H2⋯N40.90 (1)2.22 (2)3.076 (5)160 (4)
  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E)-N'-(5-Bromo-2-hy-droxy-benzyl-idene)-2-meth-oxy-benzohydrazide.

Authors:  Shi-Yong Liu; Zhonglu You
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

3.  (E)-N'-[4-(Dimethyl-amino)-benzyl-idene]-2-meth-oxy-benzohydrazide.

Authors:  Shi-Yong Liu; Xiaoling Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

4.  (E)-N'-(5-Bromo-2-hy-droxy-benzyl-idene)-4-hy-droxy-3-meth-oxy-benzohydrazide methanol solvate.

Authors:  Shi-Yong Liu; Zhonglu You
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

5.  (E)-N'-(5-Bromo-2-hy-droxy-benzyl-idene)-3-meth-oxy-benzohydrazide.

Authors:  Shi-Yong Liu; Xiaoling Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

6.  (E)-N'-(2-Chloro-5-nitro-benzyl-idene)-3-meth-oxy-benzohydrazide monohydrate.

Authors:  Shi-Yong Liu; Xiao-Ling Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11

7.  (E)-N'-(4-Hy-droxy-benzyl-idene)-2-nitro-benzohydrazide.

Authors:  Shi-Yong Liu; Zhonglu You
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16
  7 in total
  1 in total

1.  (E)-N'-(2-Chloro-5-nitro-benzyl-idene)-3-meth-oxy-benzohydrazide monohydrate.

Authors:  Shi-Yong Liu; Xiao-Ling Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11
  1 in total

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