| Literature DB >> 21837025 |
Zukhra Kadirova, Samat Tolipov, Oleg Fedorovskiy, Ibragimov Bakhtiyar, Nusrat Parpiev.
Abstract
In the title compound, C(14)H(14)F(3)NO(4), the 3,3,3-trifluoro-pyruvate fragment has a syn configuration and is noncoplanar with the indole plane [dihedral angle = 84.87 (5)°]. In the crystal, mol-ecules form inversion-related dimers via pairs of inter-molecular O-H⋯O hydrogen bonds. These dimers are connected by inter-molecular N-H⋯O=C(CF(3)) hydrogen bonds to form a two-dimensional network structure.Entities:
Year: 2011 PMID: 21837025 PMCID: PMC3152102 DOI: 10.1107/S1600536811021489
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H14F3NO4 | |
| Monoclinic, | Cu |
| Hall symbol: -P 2yn | Cell parameters from 2319 reflections |
| θ = 5.5–75.5° | |
| µ = 1.15 mm−1 | |
| β = 109.314 (5)° | Block, colourless |
| 0.55 × 0.45 × 0.40 mm | |
| Oxford Diffraction Xcalibur Ruby CCD diffractometer | 2911 independent reflections |
| Radiation source: fine-focus sealed tube | 2319 reflections with |
| graphite | |
| Detector resolution: 10.2576 pixels mm-1 | θmax = 75.9°, θmin = 5.5° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 5738 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2911 reflections | Δρmax = 0.20 e Å−3 |
| 234 parameters | Δρmin = −0.14 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0092 (10) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes.Bond distances, angles |
| Refinement. Refinement of |
| F1 | 0.24919 (15) | 0.21987 (8) | 0.04081 (14) | 0.0900 (4) | |
| F2 | 0.24512 (15) | 0.09413 (9) | −0.03770 (13) | 0.0863 (4) | |
| F3 | 0.42514 (12) | 0.13538 (8) | 0.14198 (14) | 0.0805 (4) | |
| O1 | −0.16538 (14) | 0.08409 (10) | 0.51949 (16) | 0.0773 (4) | |
| O2 | 0.04297 (12) | 0.12631 (7) | 0.09810 (13) | 0.0566 (3) | |
| O3 | 0.12118 (13) | −0.03385 (7) | 0.13702 (13) | 0.0622 (3) | |
| O4 | 0.34902 (11) | −0.00327 (7) | 0.27903 (12) | 0.0535 (3) | |
| N1 | 0.34543 (16) | 0.23072 (9) | 0.50886 (17) | 0.0590 (4) | |
| C1 | 0.22216 (17) | 0.19773 (10) | 0.53026 (18) | 0.0524 (4) | |
| C2 | 0.1720 (2) | 0.20300 (11) | 0.6458 (2) | 0.0627 (5) | |
| C3 | 0.0439 (2) | 0.16245 (13) | 0.6367 (2) | 0.0658 (5) | |
| C4 | −0.03659 (18) | 0.11812 (11) | 0.5139 (2) | 0.0596 (4) | |
| C5 | 0.01333 (17) | 0.11079 (10) | 0.40028 (19) | 0.0528 (4) | |
| C6 | 0.14673 (16) | 0.15055 (9) | 0.40867 (17) | 0.0476 (4) | |
| C7 | 0.23112 (16) | 0.15638 (9) | 0.31430 (17) | 0.0479 (4) | |
| C8 | 0.34965 (18) | 0.20619 (10) | 0.3800 (2) | 0.0556 (4) | |
| C9 | 0.19239 (16) | 0.11127 (9) | 0.17494 (17) | 0.0475 (4) | |
| C10 | 0.21565 (15) | 0.01523 (9) | 0.19510 (16) | 0.0461 (4) | |
| C11 | 0.3900 (2) | −0.09195 (11) | 0.2897 (2) | 0.0639 (5) | |
| C12 | 0.4403 (3) | −0.11618 (14) | 0.1696 (3) | 0.0826 (6) | |
| H12A | 0.4697 | −0.1739 | 0.1794 | 0.124* | |
| H12B | 0.5223 | −0.0818 | 0.1702 | 0.124* | |
| H12C | 0.3613 | −0.1085 | 0.0817 | 0.124* | |
| C13 | 0.2798 (2) | 0.14066 (12) | 0.0805 (2) | 0.0645 (5) | |
| C14 | −0.2605 (2) | 0.04673 (16) | 0.3932 (2) | 0.0810 (6) | |
| H14A | −0.3506 | 0.0303 | 0.4073 | 0.122* | |
| H14B | −0.2137 | −0.0017 | 0.3703 | 0.122* | |
| H14C | −0.2815 | 0.0863 | 0.3166 | 0.122* | |
| H1A | 0.403 (2) | 0.2684 (13) | 0.559 (2) | 0.066 (6)* | |
| H2A | 0.222 (2) | 0.2317 (15) | 0.724 (2) | 0.079 (6)* | |
| H2B | 0.009 (2) | 0.0882 (16) | 0.045 (2) | 0.079 (7)* | |
| H3A | 0.007 (2) | 0.1646 (14) | 0.715 (2) | 0.075 (6)* | |
| H5A | −0.0408 (19) | 0.0778 (12) | 0.3176 (19) | 0.056 (5)* | |
| H8A | 0.430 (2) | 0.2217 (12) | 0.3467 (19) | 0.059 (5)* | |
| H11A | 0.304 (2) | −0.1242 (13) | 0.292 (2) | 0.068 (6)* | |
| H11B | 0.473 (3) | −0.0959 (14) | 0.378 (2) | 0.079 (6)* |
| F1 | 0.1020 (9) | 0.0653 (7) | 0.0962 (9) | −0.0066 (6) | 0.0240 (7) | 0.0318 (6) |
| F2 | 0.0997 (9) | 0.0956 (10) | 0.0691 (7) | −0.0147 (7) | 0.0352 (6) | −0.0033 (6) |
| F3 | 0.0560 (6) | 0.0923 (9) | 0.0963 (8) | −0.0088 (6) | 0.0292 (6) | 0.0143 (7) |
| O1 | 0.0549 (7) | 0.0862 (10) | 0.0964 (10) | −0.0112 (7) | 0.0323 (7) | −0.0175 (8) |
| O2 | 0.0429 (6) | 0.0470 (6) | 0.0639 (7) | 0.0081 (5) | −0.0037 (5) | −0.0038 (6) |
| O3 | 0.0518 (6) | 0.0471 (6) | 0.0710 (7) | −0.0071 (5) | −0.0022 (5) | 0.0011 (5) |
| O4 | 0.0387 (5) | 0.0429 (6) | 0.0696 (7) | 0.0059 (4) | 0.0053 (5) | 0.0037 (5) |
| N1 | 0.0492 (7) | 0.0435 (7) | 0.0687 (9) | −0.0106 (6) | −0.0014 (7) | −0.0051 (6) |
| C1 | 0.0448 (8) | 0.0369 (7) | 0.0645 (10) | 0.0019 (6) | 0.0032 (7) | −0.0040 (7) |
| C2 | 0.0611 (10) | 0.0519 (10) | 0.0645 (11) | 0.0052 (8) | 0.0066 (9) | −0.0157 (8) |
| C3 | 0.0611 (10) | 0.0628 (11) | 0.0724 (12) | 0.0074 (9) | 0.0204 (9) | −0.0139 (9) |
| C4 | 0.0469 (8) | 0.0525 (9) | 0.0774 (11) | 0.0031 (7) | 0.0179 (8) | −0.0085 (8) |
| C5 | 0.0420 (8) | 0.0442 (8) | 0.0648 (10) | −0.0021 (6) | 0.0076 (7) | −0.0100 (7) |
| C6 | 0.0408 (7) | 0.0331 (7) | 0.0600 (9) | 0.0026 (6) | 0.0049 (6) | −0.0033 (6) |
| C7 | 0.0404 (7) | 0.0358 (7) | 0.0594 (9) | 0.0005 (6) | 0.0055 (6) | 0.0032 (6) |
| C8 | 0.0437 (8) | 0.0459 (9) | 0.0673 (10) | −0.0053 (7) | 0.0050 (7) | 0.0068 (7) |
| C9 | 0.0365 (7) | 0.0415 (8) | 0.0563 (9) | 0.0015 (6) | 0.0042 (6) | 0.0038 (6) |
| C10 | 0.0390 (7) | 0.0426 (8) | 0.0515 (8) | 0.0001 (6) | 0.0079 (6) | 0.0010 (6) |
| C11 | 0.0521 (9) | 0.0459 (9) | 0.0860 (13) | 0.0096 (8) | 0.0125 (9) | 0.0074 (9) |
| C12 | 0.0726 (13) | 0.0660 (12) | 0.1059 (17) | 0.0106 (10) | 0.0249 (12) | −0.0157 (12) |
| C13 | 0.0636 (10) | 0.0580 (10) | 0.0664 (11) | −0.0046 (8) | 0.0139 (8) | 0.0111 (9) |
| C14 | 0.0487 (10) | 0.0883 (15) | 0.1008 (16) | −0.0144 (10) | 0.0176 (10) | −0.0043 (12) |
| F1—C13 | 1.330 (2) | C4—C5 | 1.375 (3) |
| F2—C13 | 1.339 (2) | C5—C6 | 1.410 (2) |
| F3—C13 | 1.332 (2) | C5—H5A | 0.972 (18) |
| O1—C4 | 1.372 (2) | C6—C7 | 1.436 (2) |
| O1—C14 | 1.421 (3) | C7—C8 | 1.367 (2) |
| O2—C9 | 1.4090 (17) | C7—C9 | 1.499 (2) |
| O2—H2B | 0.80 (2) | C8—H8A | 0.974 (18) |
| O3—C10 | 1.1954 (18) | C9—C13 | 1.530 (3) |
| O4—C10 | 1.3137 (17) | C9—C10 | 1.554 (2) |
| O4—C11 | 1.465 (2) | C11—C12 | 1.484 (3) |
| N1—C8 | 1.357 (2) | C11—H11A | 0.98 (2) |
| N1—C1 | 1.378 (2) | C11—H11B | 0.98 (2) |
| N1—H1A | 0.86 (2) | C12—H12A | 0.9600 |
| C1—C2 | 1.391 (3) | C12—H12B | 0.9600 |
| C1—C6 | 1.408 (2) | C12—H12C | 0.9600 |
| C2—C3 | 1.369 (3) | C14—H14A | 0.9600 |
| C2—H2A | 0.90 (2) | C14—H14B | 0.9600 |
| C3—C4 | 1.405 (3) | C14—H14C | 0.9600 |
| C3—H3A | 0.97 (2) | ||
| C4—O1—C14 | 117.18 (16) | C7—C9—C13 | 113.86 (13) |
| C9—O2—H2B | 110.4 (17) | O2—C9—C10 | 108.44 (12) |
| C10—O4—C11 | 116.54 (13) | C7—C9—C10 | 111.95 (13) |
| C8—N1—C1 | 109.48 (14) | C13—C9—C10 | 107.31 (14) |
| C8—N1—H1A | 122.4 (13) | O3—C10—O4 | 126.01 (14) |
| C1—N1—H1A | 127.1 (13) | O3—C10—C9 | 122.07 (13) |
| N1—C1—C2 | 131.13 (16) | O4—C10—C9 | 111.91 (12) |
| N1—C1—C6 | 107.25 (16) | O4—C11—C12 | 110.23 (17) |
| C2—C1—C6 | 121.60 (16) | O4—C11—H11A | 107.4 (12) |
| C3—C2—C1 | 117.93 (17) | C12—C11—H11A | 112.8 (12) |
| C3—C2—H2A | 120.9 (14) | O4—C11—H11B | 104.3 (13) |
| C1—C2—H2A | 121.2 (14) | C12—C11—H11B | 109.3 (13) |
| C2—C3—C4 | 121.43 (19) | H11A—C11—H11B | 112.5 (17) |
| C2—C3—H3A | 119.9 (13) | C11—C12—H12A | 109.5 |
| C4—C3—H3A | 118.6 (13) | C11—C12—H12B | 109.5 |
| O1—C4—C5 | 124.53 (16) | H12A—C12—H12B | 109.5 |
| O1—C4—C3 | 114.21 (18) | C11—C12—H12C | 109.5 |
| C5—C4—C3 | 121.26 (17) | H12A—C12—H12C | 109.5 |
| C4—C5—C6 | 118.20 (15) | H12B—C12—H12C | 109.5 |
| C4—C5—H5A | 120.7 (11) | F1—C13—F3 | 107.05 (16) |
| C6—C5—H5A | 121.1 (11) | F1—C13—F2 | 107.46 (16) |
| C1—C6—C5 | 119.49 (16) | F3—C13—F2 | 106.77 (17) |
| C1—C6—C7 | 106.70 (14) | F1—C13—C9 | 111.24 (17) |
| C5—C6—C7 | 133.81 (15) | F3—C13—C9 | 113.91 (15) |
| C8—C7—C6 | 106.71 (15) | F2—C13—C9 | 110.11 (15) |
| C8—C7—C9 | 129.49 (16) | O1—C14—H14A | 109.5 |
| C6—C7—C9 | 123.74 (13) | O1—C14—H14B | 109.5 |
| N1—C8—C7 | 109.86 (16) | H14A—C14—H14B | 109.5 |
| N1—C8—H8A | 121.8 (11) | O1—C14—H14C | 109.5 |
| C7—C8—H8A | 128.3 (11) | H14A—C14—H14C | 109.5 |
| O2—C9—C7 | 108.57 (13) | H14B—C14—H14C | 109.5 |
| O2—C9—C13 | 106.46 (13) | ||
| C8—N1—C1—C2 | 178.10 (17) | C8—C7—C9—O2 | −133.00 (17) |
| C8—N1—C1—C6 | 0.03 (18) | C6—C7—C9—O2 | 50.01 (18) |
| N1—C1—C2—C3 | −179.49 (18) | C8—C7—C9—C13 | −14.6 (2) |
| C6—C1—C2—C3 | −1.7 (3) | C6—C7—C9—C13 | 168.40 (14) |
| C1—C2—C3—C4 | −1.2 (3) | C8—C7—C9—C10 | 107.32 (18) |
| C14—O1—C4—C5 | −7.2 (3) | C6—C7—C9—C10 | −69.67 (18) |
| C14—O1—C4—C3 | 172.94 (18) | C11—O4—C10—O3 | 7.0 (3) |
| C2—C3—C4—O1 | −177.34 (18) | C11—O4—C10—C9 | −171.67 (15) |
| C2—C3—C4—C5 | 2.8 (3) | O2—C9—C10—O3 | 8.1 (2) |
| O1—C4—C5—C6 | 178.83 (16) | C7—C9—C10—O3 | 127.84 (17) |
| C3—C4—C5—C6 | −1.3 (3) | C13—C9—C10—O3 | −106.54 (18) |
| N1—C1—C6—C5 | −178.63 (14) | O2—C9—C10—O4 | −173.15 (13) |
| C2—C1—C6—C5 | 3.1 (2) | C7—C9—C10—O4 | −53.40 (18) |
| N1—C1—C6—C7 | 0.41 (17) | C13—C9—C10—O4 | 72.22 (17) |
| C2—C1—C6—C7 | −177.88 (14) | C10—O4—C11—C12 | 83.2 (2) |
| C4—C5—C6—C1 | −1.5 (2) | O2—C9—C13—F1 | 54.98 (18) |
| C4—C5—C6—C7 | 179.74 (16) | C7—C9—C13—F1 | −64.61 (19) |
| C1—C6—C7—C8 | −0.69 (17) | C10—C9—C13—F1 | 170.92 (14) |
| C5—C6—C7—C8 | 178.15 (17) | O2—C9—C13—F3 | 176.06 (15) |
| C1—C6—C7—C9 | 176.89 (13) | C7—C9—C13—F3 | 56.5 (2) |
| C5—C6—C7—C9 | −4.3 (3) | C10—C9—C13—F3 | −67.99 (19) |
| C1—N1—C8—C7 | −0.48 (19) | O2—C9—C13—F2 | −64.04 (18) |
| C6—C7—C8—N1 | 0.73 (18) | C7—C9—C13—F2 | 176.37 (13) |
| C9—C7—C8—N1 | −176.66 (14) | C10—C9—C13—F2 | 51.91 (18) |
| H··· | ||||
| N1—H1A···O2i | 0.86 (2) | 2.11 (2) | 2.9166 (18) | 156.8 (18) |
| O2—H2B···O3ii | 0.80 (2) | 2.03 (2) | 2.7798 (17) | 156 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 (2) | 2.11 (2) | 2.9166 (18) | 156.8 (18) |
| O2—H2 | 0.80 (2) | 2.03 (2) | 2.7798 (17) | 156 (2) |
Symmetry codes: (i) ; (ii) .