Literature DB >> 21837025

Ethyl 3,3,3-trifluoro-2-hy-droxy-2-(5-meth-oxy-1H-indol-3-yl)propionate.

Zukhra Kadirova, Samat Tolipov, Oleg Fedorovskiy, Ibragimov Bakhtiyar, Nusrat Parpiev.   

Abstract

In the title compound, C(14)H(14)F(3)NO(4), the 3,3,3-trifluoro-pyruvate fragment has a syn configuration and is noncoplanar with the indole plane [dihedral angle = 84.87 (5)°]. In the crystal, mol-ecules form inversion-related dimers via pairs of inter-molecular O-H⋯O hydrogen bonds. These dimers are connected by inter-molecular N-H⋯O=C(CF(3)) hydrogen bonds to form a two-dimensional network structure.

Entities:  

Year:  2011        PMID: 21837025      PMCID: PMC3152102          DOI: 10.1107/S1600536811021489

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on the synthesis and activity of trifluoro­pyruvates of indole, see: Nakamura et al. (2008 ▶); Abid et al. (2008 ▶). For the crystal structures of related compounds, see: Choudhury et al. (2004 ▶); Abid et al. (2008 ▶).

Experimental

Crystal data

C14H14F3NO4 M = 317.26 Monoclinic, a = 9.6277 (4) Å b = 15.9760 (6) Å c = 9.9738 (4) Å β = 109.314 (5)° V = 1447.75 (10) Å3 Z = 4 Cu Kα radiation μ = 1.15 mm−1 T = 293 K 0.55 × 0.45 × 0.40 mm

Data collection

Oxford Diffraction Xcalibur Ruby CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.782, T max = 1.000 5738 measured reflections 2911 independent reflections 2319 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.116 S = 1.06 2911 reflections 234 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021489/pk2322sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021489/pk2322Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811021489/pk2322Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H14F3NO4F(000) = 656
Mr = 317.26Dx = 1.456 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ynCell parameters from 2319 reflections
a = 9.6277 (4) Åθ = 5.5–75.5°
b = 15.9760 (6) ŵ = 1.15 mm1
c = 9.9738 (4) ÅT = 293 K
β = 109.314 (5)°Block, colourless
V = 1447.75 (10) Å30.55 × 0.45 × 0.40 mm
Z = 4
Oxford Diffraction Xcalibur Ruby CCD diffractometer2911 independent reflections
Radiation source: fine-focus sealed tube2319 reflections with I > 2σ(I)
graphiteRint = 0.018
Detector resolution: 10.2576 pixels mm-1θmax = 75.9°, θmin = 5.5°
ω scansh = −11→12
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −19→13
Tmin = 0.782, Tmax = 1.000l = −12→12
5738 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.116w = 1/[σ2(Fo2) + (0.0607P)2 + 0.1918P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2911 reflectionsΔρmax = 0.20 e Å3
234 parametersΔρmin = −0.14 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0092 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.24919 (15)0.21987 (8)0.04081 (14)0.0900 (4)
F20.24512 (15)0.09413 (9)−0.03770 (13)0.0863 (4)
F30.42514 (12)0.13538 (8)0.14198 (14)0.0805 (4)
O1−0.16538 (14)0.08409 (10)0.51949 (16)0.0773 (4)
O20.04297 (12)0.12631 (7)0.09810 (13)0.0566 (3)
O30.12118 (13)−0.03385 (7)0.13702 (13)0.0622 (3)
O40.34902 (11)−0.00327 (7)0.27903 (12)0.0535 (3)
N10.34543 (16)0.23072 (9)0.50886 (17)0.0590 (4)
C10.22216 (17)0.19773 (10)0.53026 (18)0.0524 (4)
C20.1720 (2)0.20300 (11)0.6458 (2)0.0627 (5)
C30.0439 (2)0.16245 (13)0.6367 (2)0.0658 (5)
C4−0.03659 (18)0.11812 (11)0.5139 (2)0.0596 (4)
C50.01333 (17)0.11079 (10)0.40028 (19)0.0528 (4)
C60.14673 (16)0.15055 (9)0.40867 (17)0.0476 (4)
C70.23112 (16)0.15638 (9)0.31430 (17)0.0479 (4)
C80.34965 (18)0.20619 (10)0.3800 (2)0.0556 (4)
C90.19239 (16)0.11127 (9)0.17494 (17)0.0475 (4)
C100.21565 (15)0.01523 (9)0.19510 (16)0.0461 (4)
C110.3900 (2)−0.09195 (11)0.2897 (2)0.0639 (5)
C120.4403 (3)−0.11618 (14)0.1696 (3)0.0826 (6)
H12A0.4697−0.17390.17940.124*
H12B0.5223−0.08180.17020.124*
H12C0.3613−0.10850.08170.124*
C130.2798 (2)0.14066 (12)0.0805 (2)0.0645 (5)
C14−0.2605 (2)0.04673 (16)0.3932 (2)0.0810 (6)
H14A−0.35060.03030.40730.122*
H14B−0.2137−0.00170.37030.122*
H14C−0.28150.08630.31660.122*
H1A0.403 (2)0.2684 (13)0.559 (2)0.066 (6)*
H2A0.222 (2)0.2317 (15)0.724 (2)0.079 (6)*
H2B0.009 (2)0.0882 (16)0.045 (2)0.079 (7)*
H3A0.007 (2)0.1646 (14)0.715 (2)0.075 (6)*
H5A−0.0408 (19)0.0778 (12)0.3176 (19)0.056 (5)*
H8A0.430 (2)0.2217 (12)0.3467 (19)0.059 (5)*
H11A0.304 (2)−0.1242 (13)0.292 (2)0.068 (6)*
H11B0.473 (3)−0.0959 (14)0.378 (2)0.079 (6)*
U11U22U33U12U13U23
F10.1020 (9)0.0653 (7)0.0962 (9)−0.0066 (6)0.0240 (7)0.0318 (6)
F20.0997 (9)0.0956 (10)0.0691 (7)−0.0147 (7)0.0352 (6)−0.0033 (6)
F30.0560 (6)0.0923 (9)0.0963 (8)−0.0088 (6)0.0292 (6)0.0143 (7)
O10.0549 (7)0.0862 (10)0.0964 (10)−0.0112 (7)0.0323 (7)−0.0175 (8)
O20.0429 (6)0.0470 (6)0.0639 (7)0.0081 (5)−0.0037 (5)−0.0038 (6)
O30.0518 (6)0.0471 (6)0.0710 (7)−0.0071 (5)−0.0022 (5)0.0011 (5)
O40.0387 (5)0.0429 (6)0.0696 (7)0.0059 (4)0.0053 (5)0.0037 (5)
N10.0492 (7)0.0435 (7)0.0687 (9)−0.0106 (6)−0.0014 (7)−0.0051 (6)
C10.0448 (8)0.0369 (7)0.0645 (10)0.0019 (6)0.0032 (7)−0.0040 (7)
C20.0611 (10)0.0519 (10)0.0645 (11)0.0052 (8)0.0066 (9)−0.0157 (8)
C30.0611 (10)0.0628 (11)0.0724 (12)0.0074 (9)0.0204 (9)−0.0139 (9)
C40.0469 (8)0.0525 (9)0.0774 (11)0.0031 (7)0.0179 (8)−0.0085 (8)
C50.0420 (8)0.0442 (8)0.0648 (10)−0.0021 (6)0.0076 (7)−0.0100 (7)
C60.0408 (7)0.0331 (7)0.0600 (9)0.0026 (6)0.0049 (6)−0.0033 (6)
C70.0404 (7)0.0358 (7)0.0594 (9)0.0005 (6)0.0055 (6)0.0032 (6)
C80.0437 (8)0.0459 (9)0.0673 (10)−0.0053 (7)0.0050 (7)0.0068 (7)
C90.0365 (7)0.0415 (8)0.0563 (9)0.0015 (6)0.0042 (6)0.0038 (6)
C100.0390 (7)0.0426 (8)0.0515 (8)0.0001 (6)0.0079 (6)0.0010 (6)
C110.0521 (9)0.0459 (9)0.0860 (13)0.0096 (8)0.0125 (9)0.0074 (9)
C120.0726 (13)0.0660 (12)0.1059 (17)0.0106 (10)0.0249 (12)−0.0157 (12)
C130.0636 (10)0.0580 (10)0.0664 (11)−0.0046 (8)0.0139 (8)0.0111 (9)
C140.0487 (10)0.0883 (15)0.1008 (16)−0.0144 (10)0.0176 (10)−0.0043 (12)
F1—C131.330 (2)C4—C51.375 (3)
F2—C131.339 (2)C5—C61.410 (2)
F3—C131.332 (2)C5—H5A0.972 (18)
O1—C41.372 (2)C6—C71.436 (2)
O1—C141.421 (3)C7—C81.367 (2)
O2—C91.4090 (17)C7—C91.499 (2)
O2—H2B0.80 (2)C8—H8A0.974 (18)
O3—C101.1954 (18)C9—C131.530 (3)
O4—C101.3137 (17)C9—C101.554 (2)
O4—C111.465 (2)C11—C121.484 (3)
N1—C81.357 (2)C11—H11A0.98 (2)
N1—C11.378 (2)C11—H11B0.98 (2)
N1—H1A0.86 (2)C12—H12A0.9600
C1—C21.391 (3)C12—H12B0.9600
C1—C61.408 (2)C12—H12C0.9600
C2—C31.369 (3)C14—H14A0.9600
C2—H2A0.90 (2)C14—H14B0.9600
C3—C41.405 (3)C14—H14C0.9600
C3—H3A0.97 (2)
C4—O1—C14117.18 (16)C7—C9—C13113.86 (13)
C9—O2—H2B110.4 (17)O2—C9—C10108.44 (12)
C10—O4—C11116.54 (13)C7—C9—C10111.95 (13)
C8—N1—C1109.48 (14)C13—C9—C10107.31 (14)
C8—N1—H1A122.4 (13)O3—C10—O4126.01 (14)
C1—N1—H1A127.1 (13)O3—C10—C9122.07 (13)
N1—C1—C2131.13 (16)O4—C10—C9111.91 (12)
N1—C1—C6107.25 (16)O4—C11—C12110.23 (17)
C2—C1—C6121.60 (16)O4—C11—H11A107.4 (12)
C3—C2—C1117.93 (17)C12—C11—H11A112.8 (12)
C3—C2—H2A120.9 (14)O4—C11—H11B104.3 (13)
C1—C2—H2A121.2 (14)C12—C11—H11B109.3 (13)
C2—C3—C4121.43 (19)H11A—C11—H11B112.5 (17)
C2—C3—H3A119.9 (13)C11—C12—H12A109.5
C4—C3—H3A118.6 (13)C11—C12—H12B109.5
O1—C4—C5124.53 (16)H12A—C12—H12B109.5
O1—C4—C3114.21 (18)C11—C12—H12C109.5
C5—C4—C3121.26 (17)H12A—C12—H12C109.5
C4—C5—C6118.20 (15)H12B—C12—H12C109.5
C4—C5—H5A120.7 (11)F1—C13—F3107.05 (16)
C6—C5—H5A121.1 (11)F1—C13—F2107.46 (16)
C1—C6—C5119.49 (16)F3—C13—F2106.77 (17)
C1—C6—C7106.70 (14)F1—C13—C9111.24 (17)
C5—C6—C7133.81 (15)F3—C13—C9113.91 (15)
C8—C7—C6106.71 (15)F2—C13—C9110.11 (15)
C8—C7—C9129.49 (16)O1—C14—H14A109.5
C6—C7—C9123.74 (13)O1—C14—H14B109.5
N1—C8—C7109.86 (16)H14A—C14—H14B109.5
N1—C8—H8A121.8 (11)O1—C14—H14C109.5
C7—C8—H8A128.3 (11)H14A—C14—H14C109.5
O2—C9—C7108.57 (13)H14B—C14—H14C109.5
O2—C9—C13106.46 (13)
C8—N1—C1—C2178.10 (17)C8—C7—C9—O2−133.00 (17)
C8—N1—C1—C60.03 (18)C6—C7—C9—O250.01 (18)
N1—C1—C2—C3−179.49 (18)C8—C7—C9—C13−14.6 (2)
C6—C1—C2—C3−1.7 (3)C6—C7—C9—C13168.40 (14)
C1—C2—C3—C4−1.2 (3)C8—C7—C9—C10107.32 (18)
C14—O1—C4—C5−7.2 (3)C6—C7—C9—C10−69.67 (18)
C14—O1—C4—C3172.94 (18)C11—O4—C10—O37.0 (3)
C2—C3—C4—O1−177.34 (18)C11—O4—C10—C9−171.67 (15)
C2—C3—C4—C52.8 (3)O2—C9—C10—O38.1 (2)
O1—C4—C5—C6178.83 (16)C7—C9—C10—O3127.84 (17)
C3—C4—C5—C6−1.3 (3)C13—C9—C10—O3−106.54 (18)
N1—C1—C6—C5−178.63 (14)O2—C9—C10—O4−173.15 (13)
C2—C1—C6—C53.1 (2)C7—C9—C10—O4−53.40 (18)
N1—C1—C6—C70.41 (17)C13—C9—C10—O472.22 (17)
C2—C1—C6—C7−177.88 (14)C10—O4—C11—C1283.2 (2)
C4—C5—C6—C1−1.5 (2)O2—C9—C13—F154.98 (18)
C4—C5—C6—C7179.74 (16)C7—C9—C13—F1−64.61 (19)
C1—C6—C7—C8−0.69 (17)C10—C9—C13—F1170.92 (14)
C5—C6—C7—C8178.15 (17)O2—C9—C13—F3176.06 (15)
C1—C6—C7—C9176.89 (13)C7—C9—C13—F356.5 (2)
C5—C6—C7—C9−4.3 (3)C10—C9—C13—F3−67.99 (19)
C1—N1—C8—C7−0.48 (19)O2—C9—C13—F2−64.04 (18)
C6—C7—C8—N10.73 (18)C7—C9—C13—F2176.37 (13)
C9—C7—C8—N1−176.66 (14)C10—C9—C13—F251.91 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.86 (2)2.11 (2)2.9166 (18)156.8 (18)
O2—H2B···O3ii0.80 (2)2.03 (2)2.7798 (17)156 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.86 (2)2.11 (2)2.9166 (18)156.8 (18)
O2—H2B⋯O3ii0.80 (2)2.03 (2)2.7798 (17)156 (2)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Crystal engineering via C-H...F and C-H...pi interactions in two substituted indoles.

Authors:  A R Choudhury; K Nagarajan; T N Guru Row
Journal:  Acta Crystallogr C       Date:  2004-08-11       Impact factor: 1.172

3.  Triflic acid-catalyzed highly stereoselective friedel-crafts aminoalkylation of indoles and pyrroles.

Authors:  Mohammed Abid; Liliana Teixeira; Béla Török
Journal:  Org Lett       Date:  2008-02-07       Impact factor: 6.005

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.