Literature DB >> 21836977

4-[(E)-(2,3-Dichloro-benzyl-idene)amino]-phenol.

Li-Xia Sun1, Yun-Dan Yu, Guo-Ying Wei.   

Abstract

In the title compound, C(13)H(9)Cl(2)NO, the dihedral angle between the benzene rings is 54.22 (10)°. In the crystal, mol-ecules are linked by O-H⋯N inter-molecular hydrogen bonds, forming a zigzag C(7) chain along the a axis.

Entities:  

Year:  2011        PMID: 21836977      PMCID: PMC3151848          DOI: 10.1107/S1600536811019933

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of Schiff base ligands, see: Bedia et al. (2006 ▶). For related structures, see: Fun et al. (2008 ▶); Alhadi et al. (2008 ▶); Nie (2008 ▶). For reference bond-length values, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C13H9Cl2NO M = 266.11 Orthorhombic, a = 6.049 (4) Å b = 10.038 (6) Å c = 19.645 (12) Å V = 1192.8 (13) Å3 Z = 4 Mo Kα radiation μ = 0.52 mm−1 T = 296 K 0.25 × 0.23 × 0.21 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.880, T max = 0.898 4853 measured reflections 2184 independent reflections 1998 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.072 S = 1.17 2184 reflections 156 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.14 e Å−3 Absolute structure: Flack (1983 ▶), 869 Friedel pairs Flack parameter: 0.04 (6) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811019933/hb5895sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019933/hb5895Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811019933/hb5895Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H9Cl2NOF(000) = 544
Mr = 266.11Dx = 1.482 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2869 reflections
a = 6.049 (4) Åθ = 2.3–27.2°
b = 10.038 (6) ŵ = 0.52 mm1
c = 19.645 (12) ÅT = 296 K
V = 1192.8 (13) Å3Block, yellow
Z = 40.25 × 0.23 × 0.21 mm
Bruker APEXII CCD diffractometer2184 independent reflections
Radiation source: fine-focus sealed tube1998 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 25.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −7→7
Tmin = 0.880, Tmax = 0.898k = −8→12
4853 measured reflectionsl = −23→21
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.030w = 1/[σ2(Fo2) + (0.0269P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.072(Δ/σ)max < 0.001
S = 1.17Δρmax = 0.15 e Å3
2184 reflectionsΔρmin = −0.14 e Å3
156 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.073 (4)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 869 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.04 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6782 (4)0.13161 (18)0.30064 (9)0.0315 (5)
C20.8717 (4)0.2032 (2)0.29247 (10)0.0380 (5)
H20.98830.19030.32260.046*
C30.8932 (4)0.2937 (2)0.23991 (10)0.0353 (5)
H31.02410.34130.23470.042*
C40.7192 (3)0.31355 (18)0.19496 (10)0.0305 (5)
C50.5261 (4)0.2441 (2)0.20450 (11)0.0389 (5)
H50.40740.25930.17540.047*
C60.5046 (4)0.1522 (2)0.25642 (11)0.0380 (5)
H60.37390.10450.26150.046*
C70.9040 (4)0.3995 (2)0.10174 (10)0.0305 (5)
H71.01600.34060.11380.037*
C80.9356 (3)0.48183 (19)0.04113 (10)0.0302 (5)
C90.7862 (4)0.5815 (2)0.02412 (11)0.0404 (5)
H90.66850.59970.05310.049*
C100.8097 (4)0.6539 (2)−0.03507 (13)0.0528 (6)
H100.70810.7203−0.04570.063*
C110.9837 (5)0.6281 (2)−0.07860 (12)0.0502 (6)
H110.99870.6761−0.11880.060*
C121.1338 (4)0.5315 (2)−0.06226 (10)0.0392 (5)
C131.1149 (4)0.45927 (17)−0.00259 (10)0.0317 (5)
Cl11.35264 (12)0.50375 (7)−0.11774 (3)0.0628 (2)
Cl21.31056 (9)0.33967 (5)0.01639 (3)0.04412 (18)
N10.7322 (3)0.40395 (17)0.13882 (8)0.0321 (4)
O10.6681 (3)0.04560 (15)0.35434 (8)0.0447 (4)
H10.55100.00450.35310.067*
U11U22U33U12U13U23
C10.0295 (12)0.0359 (10)0.0290 (10)−0.0003 (9)0.0016 (9)0.0003 (8)
C20.0288 (12)0.0525 (12)0.0326 (11)−0.0050 (10)−0.0052 (9)0.0053 (9)
C30.0249 (12)0.0454 (12)0.0355 (11)−0.0058 (10)0.0016 (9)0.0011 (9)
C40.0271 (12)0.0343 (10)0.0302 (10)0.0027 (9)0.0046 (8)0.0020 (8)
C50.0230 (12)0.0556 (14)0.0382 (12)0.0002 (10)−0.0027 (10)0.0068 (10)
C60.0241 (11)0.0480 (12)0.0419 (12)−0.0102 (11)0.0010 (9)0.0070 (10)
C70.0270 (11)0.0325 (10)0.0319 (11)0.0014 (9)−0.0015 (9)0.0009 (8)
C80.0271 (11)0.0311 (10)0.0323 (10)−0.0043 (9)−0.0019 (8)−0.0004 (8)
C90.0368 (13)0.0421 (11)0.0424 (12)0.0024 (10)0.0006 (11)0.0075 (10)
C100.0516 (16)0.0468 (13)0.0601 (15)0.0043 (13)−0.0085 (13)0.0184 (12)
C110.0582 (17)0.0521 (14)0.0403 (13)−0.0114 (13)−0.0060 (12)0.0166 (11)
C120.0396 (14)0.0467 (12)0.0312 (11)−0.0145 (11)0.0007 (10)−0.0038 (9)
C130.0323 (12)0.0321 (10)0.0309 (11)−0.0072 (8)−0.0015 (9)−0.0021 (8)
Cl10.0631 (5)0.0830 (5)0.0424 (4)−0.0188 (4)0.0200 (3)−0.0021 (3)
Cl20.0381 (3)0.0505 (3)0.0437 (3)0.0092 (3)0.0070 (3)−0.0034 (2)
N10.0269 (10)0.0360 (9)0.0334 (9)0.0021 (7)0.0006 (8)0.0007 (7)
O10.0372 (10)0.0563 (9)0.0407 (8)−0.0109 (8)−0.0033 (7)0.0166 (7)
C1—O11.365 (2)C7—H70.9300
C1—C61.379 (3)C8—C91.390 (3)
C1—C21.382 (3)C8—C131.402 (3)
C2—C31.382 (3)C9—C101.378 (3)
C2—H20.9300C9—H90.9300
C3—C41.388 (3)C10—C111.381 (4)
C3—H30.9300C10—H100.9300
C4—C51.373 (3)C11—C121.366 (3)
C4—N11.430 (2)C11—H110.9300
C5—C61.381 (3)C12—C131.383 (3)
C5—H50.9300C12—Cl11.737 (2)
C6—H60.9300C13—Cl21.727 (2)
C7—N11.270 (3)O1—H10.8200
C7—C81.462 (3)
O1—C1—C6123.22 (19)C9—C8—C13118.18 (19)
O1—C1—C2117.18 (18)C9—C8—C7121.20 (19)
C6—C1—C2119.58 (18)C13—C8—C7120.60 (18)
C3—C2—C1120.57 (19)C10—C9—C8121.0 (2)
C3—C2—H2119.7C10—C9—H9119.5
C1—C2—H2119.7C8—C9—H9119.5
C2—C3—C4119.86 (19)C9—C10—C11120.1 (2)
C2—C3—H3120.1C9—C10—H10119.9
C4—C3—H3120.1C11—C10—H10119.9
C5—C4—C3119.06 (18)C12—C11—C10119.6 (2)
C5—C4—N1118.29 (18)C12—C11—H11120.2
C3—C4—N1122.66 (17)C10—C11—H11120.2
C4—C5—C6121.3 (2)C11—C12—C13121.1 (2)
C4—C5—H5119.3C11—C12—Cl1118.21 (17)
C6—C5—H5119.3C13—C12—Cl1120.71 (18)
C1—C6—C5119.6 (2)C12—C13—C8119.9 (2)
C1—C6—H6120.2C12—C13—Cl2119.40 (17)
C5—C6—H6120.2C8—C13—Cl2120.68 (15)
N1—C7—C8123.66 (19)C7—N1—C4117.70 (17)
N1—C7—H7118.2C1—O1—H1109.5
C8—C7—H7118.2
O1—C1—C2—C3−179.00 (19)C9—C10—C11—C12−0.8 (4)
C6—C1—C2—C3−0.8 (3)C10—C11—C12—C13−0.2 (3)
C1—C2—C3—C40.2 (3)C10—C11—C12—Cl1−179.07 (19)
C2—C3—C4—C51.3 (3)C11—C12—C13—C82.0 (3)
C2—C3—C4—N1−178.85 (18)Cl1—C12—C13—C8−179.16 (15)
C3—C4—C5—C6−2.1 (3)C11—C12—C13—Cl2−179.20 (17)
N1—C4—C5—C6177.97 (19)Cl1—C12—C13—Cl2−0.4 (2)
O1—C1—C6—C5178.0 (2)C9—C8—C13—C12−2.8 (3)
C2—C1—C6—C50.0 (3)C7—C8—C13—C12175.34 (18)
C4—C5—C6—C11.5 (3)C9—C8—C13—Cl2178.46 (15)
N1—C7—C8—C96.8 (3)C7—C8—C13—Cl2−3.4 (3)
N1—C7—C8—C13−171.26 (19)C8—C7—N1—C4177.33 (18)
C13—C8—C9—C101.8 (3)C5—C4—N1—C7−133.5 (2)
C7—C8—C9—C10−176.3 (2)C3—C4—N1—C746.7 (3)
C8—C9—C10—C11−0.1 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···N1i0.821.992.811 (3)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N1i0.821.992.811 (3)174

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and characterization of novel hydrazide-hydrazones and the study of their structure-antituberculosis activity.

Authors:  Koçyiğit-Kaymakçioğlu Bedia; Oruç Elçin; Unsalan Seda; Kandemirli Fatma; Shvets Nathaly; Rollas Sevim; Anatholy Dimoglo
Journal:  Eur J Med Chem       Date:  2006-08-17       Impact factor: 6.514

3.  N'-[4-(Dimethyl-amino)benzyl-idene]-3-hydroxy-benzohydrazide.

Authors:  Yi Nie
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-18

4.  N'-(5-Bromo-2-hydroxy-benzyl-idene)-3,4,5-trihydroxy-benzohydrazide dihydrate.

Authors:  Abeer A Alhadi; Hapipah M Ali; Subramaniam Puvaneswary; Ward T Robinson; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-23

5.  4-Chloro-N'-[(Z)-4-(dimethyl-amino)benzyl-idene]benzohydrazide mono-hydrate.

Authors:  Hoong-Kun Fun; P S Patil; Samuel Robinson Jebas; K V Sujith; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26
  5 in total
  5 in total

1.  4-[(E)-(4-Fluoro-benzyl-idene)amino]-phenol.

Authors:  Li-Xia Sun; Yun-Dan Yu; Guo-Ying Wei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-04

2.  (E)-4-Chloro-N-(2,4,6-trimethyl-benzyl-idene)aniline.

Authors:  Ying Guo; Meng-Xin Pan; Hai Xiang; Wen-Hong Liu; Zhong-Cheng Song
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

3.  (E)-4-Bromo-N-(2-chloro-benzyl-idene)-aniline.

Authors:  Chuang Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-30

4.  N-[(E)-4-Bromo-benzyl-idene]-3,4-di-methyl-aniline.

Authors:  Li-Xia Sun; Ling-Zhi Zhu; Jun-Kai Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-05

5.  N-[(E)-4-Bromo-benzyl-idene]-2,3-di-methyl-aniline.

Authors:  Li-Xia Sun; Ling-Zhi Zhu; Jun-Kai Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-05
  5 in total

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