Literature DB >> 21203282

N'-(5-Bromo-2-hydroxy-benzyl-idene)-3,4,5-trihydroxy-benzohydrazide dihydrate.

Abeer A Alhadi1, Hapipah M Ali, Subramaniam Puvaneswary, Ward T Robinson, Seik Weng Ng.   

Abstract

The title compound, C(14)H(11)BrN(2)O(5)·2H(2)O, crystallizes as hydrogen-bonded sheets. The 2-hydr-oxy group on the benzyl-idene group forms an intra-molecular hydrogen bond to the N atom of the C=N double bond. The amino N atom is a hydrogen-bond donor to a water mol-ecule. The hydr-oxy group on the benzohydrazide group is a hydrogen-bond donor to one acceptor site, whereas each water mol-ecule is a hydrogen-bond donor to two acceptor sites.

Entities:  

Year:  2008        PMID: 21203282      PMCID: PMC2962201          DOI: 10.1107/S1600536808022708

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of a similar Schiff-base ligand, 5-bromo­salicylaldehyde benzoyl­hydrazone, see: Liu et al. (2006 ▶).

Experimental

Crystal data

C14H11BrN2O5·2H2O M = 403.19 Monoclinic, a = 30.8424 (8) Å b = 3.7999 (1) Å c = 12.8484 (4) Å β = 90.280 (2)° V = 1505.79 (7) Å3 Z = 4 Mo Kα radiation μ = 2.77 mm−1 T = 100 (2) K 0.30 × 0.03 × 0.03 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.658, T max = 0.921 9964 measured reflections 3424 independent reflections 2914 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.155 S = 1.22 3424 reflections 241 parameters 10 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.08 e Å−3 Δρmin = −1.82 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808022708/bt2751sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022708/bt2751Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H11BrN2O5·2H2OF000 = 816
Mr = 403.19Dx = 1.779 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2758 reflections
a = 30.8424 (8) Åθ = 3.2–27.4º
b = 3.7999 (1) ŵ = 2.77 mm1
c = 12.8484 (4) ÅT = 100 (2) K
β = 90.280 (2)ºNeedle, colorless
V = 1505.79 (7) Å30.30 × 0.03 × 0.03 mm
Z = 4
Bruker SMART APEX diffractometer3424 independent reflections
Radiation source: fine-focus sealed tube2914 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.039
T = 100(2) Kθmax = 27.5º
ω scansθmin = 1.3º
Absorption correction: Multi-scan(SADABS; Sheldrick, 1996)h = −38→40
Tmin = 0.658, Tmax = 0.921k = −4→4
9964 measured reflectionsl = −15→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.064H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.155  w = 1/[σ2(Fo2) + (0.0499P)2 + 10.2476P] where P = (Fo2 + 2Fc2)/3
S = 1.22(Δ/σ)max = 0.001
3424 reflectionsΔρmax = 1.08 e Å3
241 parametersΔρmin = −1.82 e Å3
10 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Br10.467910 (16)0.31017 (16)0.89799 (4)0.01787 (17)
O10.32358 (12)0.6446 (12)0.5944 (3)0.0201 (9)
H1O0.3020 (15)0.745 (18)0.621 (5)0.030*
O20.20078 (11)0.9755 (11)0.6545 (3)0.0182 (8)
O30.05472 (13)1.3768 (13)0.7962 (4)0.0295 (11)
H3O0.0335 (16)1.36 (2)0.836 (5)0.044*
O40.05208 (14)1.1036 (15)0.9894 (4)0.0353 (12)
H4O0.048 (3)0.933 (15)1.030 (6)0.053*
O50.12324 (12)0.7692 (12)1.0737 (3)0.0182 (9)
H5O0.1471 (12)0.682 (18)1.092 (5)0.027*
O1W0.25912 (12)1.3152 (13)0.9988 (3)0.0209 (9)
H1W10.2444 (17)1.382 (18)1.050 (3)0.031*
H1W20.2806 (14)1.199 (17)1.020 (4)0.031*
O2W−0.02887 (15)1.3435 (17)0.8657 (5)0.0506 (16)
H2W1−0.042 (3)1.30 (2)0.810 (4)0.076*
H2W2−0.038 (3)1.534 (14)0.890 (7)0.076*
N10.27850 (13)0.8683 (12)0.7531 (3)0.0139 (9)
N20.24174 (13)0.9859 (13)0.8027 (3)0.0138 (9)
H2N0.24311.05110.86840.017*
C10.35563 (16)0.5778 (15)0.6648 (4)0.0144 (10)
C20.39381 (16)0.4251 (16)0.6295 (4)0.0173 (11)
H20.39700.37300.55760.021*
C30.42746 (17)0.3479 (16)0.6985 (4)0.0193 (12)
H30.45350.24310.67430.023*
C40.42245 (16)0.4256 (16)0.8025 (4)0.0160 (11)
C50.38470 (16)0.5781 (15)0.8398 (4)0.0143 (10)
H50.38200.62940.91180.017*
C60.35065 (15)0.6562 (15)0.7712 (4)0.0126 (10)
C70.31105 (16)0.7988 (15)0.8138 (4)0.0130 (10)
H70.30890.84150.88650.016*
C80.20343 (16)1.0010 (13)0.7503 (4)0.0108 (10)
C90.16507 (16)1.0460 (15)0.8180 (4)0.0130 (10)
C100.12793 (16)1.2046 (16)0.7771 (4)0.0163 (11)
H100.12811.29840.70860.020*
C110.09101 (17)1.2242 (15)0.8368 (4)0.0176 (12)
C120.09010 (17)1.0775 (17)0.9364 (4)0.0204 (12)
C130.12713 (17)0.9146 (15)0.9777 (4)0.0152 (11)
C140.16479 (17)0.9040 (15)0.9188 (4)0.0149 (11)
H140.19030.80060.94680.018*
U11U22U33U12U13U23
Br10.0094 (2)0.0195 (3)0.0247 (3)−0.0001 (2)−0.00302 (17)−0.0020 (3)
O10.0160 (18)0.032 (3)0.0125 (17)0.0031 (18)−0.0028 (14)−0.0016 (17)
O20.0127 (17)0.027 (2)0.0148 (18)−0.0039 (16)−0.0015 (14)0.0021 (17)
O30.0142 (19)0.041 (3)0.034 (2)0.0120 (19)−0.0051 (17)−0.005 (2)
O40.016 (2)0.060 (4)0.030 (2)0.009 (2)0.0035 (18)−0.013 (2)
O50.0129 (17)0.031 (2)0.0110 (17)−0.0007 (17)0.0027 (14)−0.0045 (16)
O1W0.0162 (18)0.035 (2)0.0113 (17)0.0027 (18)0.0015 (14)−0.0044 (18)
O2W0.016 (2)0.049 (4)0.087 (5)0.010 (2)0.010 (2)0.013 (3)
N10.0107 (19)0.014 (3)0.017 (2)−0.0016 (17)0.0010 (16)−0.0008 (18)
N20.0096 (19)0.019 (3)0.013 (2)−0.0004 (18)−0.0007 (15)−0.0028 (18)
C10.014 (2)0.016 (3)0.014 (2)−0.002 (2)−0.0013 (19)−0.002 (2)
C20.013 (2)0.025 (3)0.014 (2)−0.001 (2)0.0024 (19)0.000 (2)
C30.013 (2)0.020 (3)0.025 (3)0.001 (2)0.006 (2)−0.003 (2)
C40.012 (2)0.014 (3)0.021 (3)−0.001 (2)−0.003 (2)0.003 (2)
C50.015 (2)0.013 (3)0.015 (2)−0.001 (2)0.0005 (19)−0.002 (2)
C60.010 (2)0.015 (3)0.013 (2)−0.003 (2)0.0008 (18)0.001 (2)
C70.013 (2)0.015 (3)0.012 (2)−0.006 (2)0.0022 (18)−0.003 (2)
C80.013 (2)0.004 (3)0.015 (2)−0.0007 (18)−0.0019 (18)0.0009 (19)
C90.011 (2)0.013 (3)0.015 (2)0.000 (2)−0.0027 (19)−0.003 (2)
C100.013 (2)0.016 (3)0.020 (3)0.001 (2)−0.0034 (19)0.000 (2)
C110.017 (2)0.013 (3)0.022 (3)0.008 (2)−0.007 (2)−0.007 (2)
C120.012 (2)0.027 (3)0.022 (3)0.002 (2)0.001 (2)−0.012 (2)
C130.016 (2)0.017 (3)0.013 (2)0.001 (2)0.0025 (19)−0.008 (2)
C140.013 (2)0.016 (3)0.015 (2)0.001 (2)−0.0022 (19)−0.006 (2)
Br1—C41.909 (5)C1—C61.408 (7)
O1—C11.361 (6)C2—C31.393 (8)
O1—H1O0.840 (10)C2—H20.9500
O2—C81.236 (6)C3—C41.378 (8)
O3—C111.362 (6)C3—H30.9500
O3—H3O0.838 (10)C4—C51.388 (7)
O4—C121.362 (7)C5—C61.400 (7)
O4—H4O0.840 (10)C5—H50.9500
O5—C131.357 (7)C6—C71.446 (7)
O5—H5O0.841 (10)C7—H70.9500
O1W—H1W10.839 (10)C8—C91.482 (7)
O1W—H1W20.838 (10)C9—C101.395 (7)
O2W—H2W10.838 (10)C9—C141.403 (7)
O2W—H2W20.839 (10)C10—C111.378 (7)
N1—C71.296 (7)C10—H100.9500
N1—N21.378 (6)C11—C121.396 (8)
N2—C81.359 (6)C12—C131.401 (8)
N2—H2N0.8800C13—C141.390 (7)
C1—C21.391 (7)C14—H140.9500
C1—O1—H1O113 (5)C5—C6—C7118.3 (4)
C11—O3—H3O111 (6)C1—C6—C7122.9 (5)
C12—O4—H4O112 (6)N1—C7—C6120.1 (4)
C13—O5—H5O110 (5)N1—C7—H7120.0
H1W1—O1W—H1W2109.6 (18)C6—C7—H7120.0
H2W1—O2W—H2W2109.5 (18)O2—C8—N2122.9 (4)
C7—N1—N2115.1 (4)O2—C8—C9123.0 (4)
C8—N2—N1120.0 (4)N2—C8—C9114.1 (4)
C8—N2—H2N120.0C10—C9—C14120.3 (5)
N1—N2—H2N120.0C10—C9—C8119.0 (5)
O1—C1—C2118.3 (5)C14—C9—C8120.4 (5)
O1—C1—C6121.6 (5)C11—C10—C9119.5 (5)
C2—C1—C6120.1 (5)C11—C10—H10120.2
C1—C2—C3120.6 (5)C9—C10—H10120.2
C1—C2—H2119.7O3—C11—C10119.3 (5)
C3—C2—H2119.7O3—C11—C12120.1 (5)
C4—C3—C2119.1 (5)C10—C11—C12120.6 (5)
C4—C3—H3120.5O4—C12—C11116.7 (5)
C2—C3—H3120.5O4—C12—C13123.0 (5)
C3—C4—C5121.5 (5)C11—C12—C13120.3 (5)
C3—C4—Br1119.2 (4)O5—C13—C14124.1 (5)
C5—C4—Br1119.3 (4)O5—C13—C12116.7 (5)
C4—C5—C6120.0 (5)C14—C13—C12119.2 (5)
C4—C5—H5120.0C13—C14—C9120.0 (5)
C6—C5—H5120.0C13—C14—H14120.0
C5—C6—C1118.7 (5)C9—C14—H14120.0
C7—N1—N2—C8−167.2 (5)N2—C8—C9—C10154.0 (5)
O1—C1—C2—C3−179.3 (5)O2—C8—C9—C14147.8 (5)
C6—C1—C2—C30.1 (9)N2—C8—C9—C14−31.4 (7)
C1—C2—C3—C4−0.1 (9)C14—C9—C10—C110.6 (9)
C2—C3—C4—C50.1 (9)C8—C9—C10—C11175.2 (5)
C2—C3—C4—Br1178.5 (4)C9—C10—C11—O3−179.5 (5)
C3—C4—C5—C60.0 (9)C9—C10—C11—C12−2.0 (9)
Br1—C4—C5—C6−178.4 (4)O3—C11—C12—O4−1.4 (8)
C4—C5—C6—C1−0.1 (8)C10—C11—C12—O4−178.9 (6)
C4—C5—C6—C7177.0 (5)O3—C11—C12—C13178.9 (5)
O1—C1—C6—C5179.4 (5)C10—C11—C12—C131.4 (9)
C2—C1—C6—C50.1 (8)O4—C12—C13—O52.2 (9)
O1—C1—C6—C72.5 (9)C11—C12—C13—O5−178.1 (5)
C2—C1—C6—C7−176.9 (5)O4—C12—C13—C14−179.1 (6)
N2—N1—C7—C6176.8 (5)C11—C12—C13—C140.6 (9)
C5—C6—C7—N1−178.7 (5)O5—C13—C14—C9176.7 (5)
C1—C6—C7—N1−1.8 (8)C12—C13—C14—C9−1.9 (8)
N1—N2—C8—O2−13.6 (8)C10—C9—C14—C131.3 (8)
N1—N2—C8—C9165.7 (5)C8—C9—C14—C13−173.2 (5)
O2—C8—C9—C10−26.7 (8)
D—H···AD—HH···AD···AD—H···A
O1—H1o···N10.84 (1)1.91 (5)2.616 (6)141 (7)
O3—H3o···O2w0.84 (1)1.96 (4)2.736 (6)153 (7)
O4—H4o···O2wi0.84 (1)1.81 (3)2.623 (8)163 (9)
O5—H5o···O2ii0.84 (1)1.93 (2)2.764 (5)171 (7)
O1w—H1w1···O2iii0.84 (1)1.98 (2)2.812 (5)170 (6)
O1w—H1w2···O1ii0.84 (1)2.09 (2)2.914 (6)167 (6)
O2w—H2w1···O3iv0.84 (1)2.13 (5)2.845 (9)142 (8)
O2w—H2w2···O4v0.84 (1)2.12 (4)2.900 (8)154 (8)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯N10.84 (1)1.91 (5)2.616 (6)141 (7)
O3—H3o⋯O2w0.84 (1)1.96 (4)2.736 (6)153 (7)
O4—H4o⋯O2wi0.84 (1)1.81 (3)2.623 (8)163 (9)
O5—H5o⋯O2ii0.84 (1)1.93 (2)2.764 (5)171 (7)
O1w—H1w1⋯O2iii0.84 (1)1.98 (2)2.812 (5)170 (6)
O1w—H1w2⋯O1ii0.84 (1)2.09 (2)2.914 (6)167 (6)
O2w—H2w1⋯O3iv0.84 (1)2.13 (5)2.845 (9)142 (8)
O2w—H2w2⋯O4v0.84 (1)2.12 (4)2.900 (8)154 (8)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  13 in total

1.  4-Chloro-N'-(2-hydroxy-benzyl-idene)benzohydrazide monohydrate.

Authors:  Jiu-Fu Lu; Suo-Tian Min; Xiao-Hui Ji; Zhong-Hai Dang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

2.  N'-(2,4-Dichloro-benzyl-idene)-3-methoxy-benzohydrazide.

Authors:  Chong-Gui Ren
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-20

3.  4-Hydr-oxy-N'-(3,5-dichloro-2-hydroxy-benzyl-idene)benzohydrazide.

Authors:  Chong-Gui Ren
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-06

4.  N'-(5-Chloro-2-hydroxy-benzyl-idene)nicotinohydrazide.

Authors:  Chong-Gui Ren
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-06

5.  N'-(2-Hydroxy-benzyl-idene)-2-methoxy-benzohydrazide monohydrate.

Authors:  Jiu-Fu Lu; Suo-Tian Min; Xiao-Hui Ji; Zhong-Hai Dang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

6.  N'-(2-Hydr-oxy-4-methoxy-benzyl-idene)-4-methoxy-benzohydrazide.

Authors:  Xinyou Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-22

7.  N,N-Bis(pyridin-2-yl-methyl-idene)pyridine-2,6-dicarbohydrazide dimethyl-formamide monosolvate.

Authors:  Chuan-Gang Fan; Ming-Zhi Song
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-09

8.  N'-[4-(Dimethyl-amino)benzyl-idene]benzohydrazide.

Authors:  Chuansheng Cui; Qingan Meng; Yong Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-16

9.  N'-(2-Chloro-benzyl-idene)benzo-hydrazide.

Authors:  Chuan-Gang Fan; Ming-Zhi Song
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-10

10.  4-Chloro-N'-(2-methoxy-benzyl-idene)benzohydrazide.

Authors:  Hong-Yuan Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-25
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