Literature DB >> 21836975

2-{(1S*,2S*)-2-[(E)-(2,4-Dihy-droxy-benzyl-idene)amino]-cyclo-hex-yl}isoindoline-1,3-dione.

Zhi-Jian Liu1, Xiang-Kai Fu, Zhong-Kai Hu, Xiao-Ju Wu, Liu Wu.   

Abstract

In the title mol-ecule, C(21)H(20)N(2)O(4), the dihedral angle between the phenol ring and the isoindole-1,3-dione mean plane is 69.79 (6)°. The cyclo-hexane ring adopts a chair conformation. Weak inter-molecular O-H⋯O and O-H⋯N inter-actions feature as part of the crystal packing.

Entities:  

Year:  2011        PMID: 21836975      PMCID: PMC3152027          DOI: 10.1107/S1600536811019787

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis, see: Berkessel et al. (2006 ▶); Ren & Fu (2009 ▶). For background to the synthesis of salen-type Schiff base ligands, see: Campbell & Nguyen (2001 ▶).

Experimental

Crystal data

C21H20N2O4 M = 364.39 Orthorhombic, a = 9.0247 (3) Å b = 11.7748 (4) Å c = 17.8585 (6) Å V = 1897.72 (11) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.20 × 0.20 × 0.20 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.982, T max = 0.982 34622 measured reflections 4727 independent reflections 4317 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.132 S = 1.10 4727 reflections 251 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811019787/ff2012sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019787/ff2012Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811019787/ff2012Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H20N2O4Dx = 1.275 Mg m3
Mr = 364.39Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 34622 reflections
a = 9.0247 (3) Åθ = 2.1–28.3°
b = 11.7748 (4) ŵ = 0.09 mm1
c = 17.8585 (6) ÅT = 296 K
V = 1897.72 (11) Å3Block, colourless
Z = 40.20 × 0.20 × 0.20 mm
F(000) = 768
Bruker APEX CCD area-detector diffractometer4727 independent reflections
Radiation source: fine-focus sealed tube4317 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 28.3°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.982, Tmax = 0.982k = −15→15
34622 measured reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
4727 reflections(Δ/σ)max < 0.001
251 parametersΔρmax = 0.26 e Å3
1 restraintΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.30161 (15)0.36416 (11)0.06573 (7)0.0377 (3)
C20.42917 (15)0.34393 (11)0.02192 (7)0.0388 (3)
H2B0.44450.27210.00170.047*
C30.53102 (15)0.42835 (11)0.00866 (7)0.0405 (3)
C40.5076 (2)0.53951 (12)0.03634 (11)0.0576 (4)
H4A0.57590.59670.02620.069*
C50.3856 (2)0.56221 (12)0.07755 (10)0.0551 (4)
H5A0.37020.63580.09480.066*
C60.28074 (16)0.47702 (11)0.09522 (7)0.0400 (3)
C70.15624 (16)0.50289 (12)0.13977 (7)0.0442 (3)
H7A0.14380.57740.15590.053*
C8−0.07381 (16)0.45130 (14)0.20425 (7)0.0452 (3)
H8A−0.08120.53300.21410.054*
C9−0.21031 (18)0.4117 (2)0.16090 (8)0.0604 (4)
H9A−0.21900.45540.11510.072*
H9B−0.19860.33240.14740.072*
C10−0.3512 (2)0.4259 (3)0.20717 (11)0.0762 (6)
H10A−0.43520.39730.17900.091*
H10B−0.36780.50600.21690.091*
C11−0.3396 (2)0.3625 (3)0.28091 (10)0.0809 (7)
H11A−0.42870.37510.31020.097*
H11B−0.33110.28170.27130.097*
C12−0.2046 (2)0.4032 (2)0.32491 (9)0.0683 (5)
H12A−0.19690.36080.37130.082*
H12B−0.21600.48290.33720.082*
C13−0.06454 (17)0.38642 (13)0.27883 (7)0.0458 (3)
H13A−0.05880.30540.26650.055*
C140.1428 (2)0.33206 (13)0.36431 (9)0.0524 (4)
C150.27356 (18)0.38879 (13)0.39836 (8)0.0480 (3)
C160.3843 (2)0.34711 (16)0.44396 (10)0.0667 (5)
H16A0.38450.27160.45920.080*
C170.4951 (2)0.4208 (2)0.46639 (11)0.0683 (5)
H17A0.57100.39450.49710.082*
C180.4943 (2)0.53120 (17)0.44398 (10)0.0631 (5)
H18A0.57140.57870.45850.076*
C190.38096 (18)0.57462 (14)0.39993 (10)0.0549 (4)
H19A0.37920.65070.38610.066*
C200.27078 (16)0.50062 (12)0.37739 (7)0.0432 (3)
C210.13765 (16)0.52076 (11)0.33052 (7)0.0420 (3)
N10.06951 (15)0.41440 (10)0.32197 (6)0.0446 (3)
N20.05849 (14)0.42829 (11)0.15940 (6)0.0445 (3)
O10.1041 (2)0.23425 (11)0.36929 (9)0.0804 (5)
O20.09328 (16)0.60904 (9)0.30445 (7)0.0612 (3)
O30.20554 (13)0.28623 (9)0.07975 (7)0.0560 (3)
H3A0.141 (2)0.3207 (16)0.1129 (9)0.065*
O40.65643 (13)0.41288 (9)−0.02971 (7)0.0526 (3)
H4B0.665 (3)0.340 (2)−0.0447 (12)0.070 (6)*
U11U22U33U12U13U23
C10.0332 (6)0.0376 (6)0.0423 (5)−0.0025 (5)−0.0030 (5)−0.0034 (4)
C20.0352 (6)0.0353 (5)0.0459 (5)−0.0004 (5)−0.0008 (5)−0.0045 (5)
C30.0371 (6)0.0386 (6)0.0459 (6)0.0001 (5)0.0037 (5)−0.0001 (5)
C40.0567 (9)0.0350 (6)0.0812 (10)−0.0097 (6)0.0230 (8)−0.0054 (6)
C50.0574 (9)0.0341 (6)0.0737 (9)−0.0044 (6)0.0188 (8)−0.0091 (6)
C60.0361 (6)0.0399 (6)0.0439 (5)−0.0015 (5)0.0010 (5)−0.0044 (5)
C70.0423 (7)0.0450 (6)0.0452 (6)0.0012 (6)0.0027 (5)−0.0045 (5)
C80.0337 (6)0.0610 (8)0.0408 (5)−0.0011 (6)0.0023 (5)−0.0061 (5)
C90.0374 (7)0.0999 (13)0.0439 (6)−0.0054 (9)−0.0031 (6)−0.0076 (7)
C100.0341 (8)0.130 (2)0.0648 (9)−0.0055 (11)−0.0019 (7)−0.0189 (11)
C110.0448 (9)0.141 (2)0.0570 (9)−0.0316 (12)0.0100 (7)−0.0177 (10)
C120.0469 (9)0.1134 (16)0.0445 (7)−0.0239 (10)0.0069 (7)−0.0135 (8)
C130.0407 (7)0.0544 (7)0.0423 (6)−0.0122 (6)−0.0009 (5)−0.0059 (5)
C140.0586 (9)0.0461 (7)0.0524 (7)−0.0066 (7)−0.0056 (7)0.0016 (6)
C150.0469 (8)0.0470 (7)0.0502 (6)0.0010 (6)−0.0045 (6)−0.0030 (5)
C160.0713 (12)0.0577 (9)0.0712 (10)0.0147 (9)−0.0154 (9)0.0034 (8)
C170.0510 (9)0.0877 (13)0.0661 (9)0.0242 (9)−0.0171 (8)−0.0182 (9)
C180.0387 (8)0.0766 (11)0.0741 (10)0.0040 (8)−0.0097 (7)−0.0236 (9)
C190.0422 (8)0.0529 (8)0.0695 (9)−0.0048 (7)−0.0075 (7)−0.0107 (7)
C200.0391 (7)0.0449 (6)0.0456 (6)0.0002 (6)−0.0024 (5)−0.0063 (5)
C210.0405 (7)0.0408 (6)0.0445 (6)−0.0048 (5)−0.0035 (5)−0.0025 (5)
N10.0430 (6)0.0445 (6)0.0462 (5)−0.0079 (5)−0.0059 (5)−0.0017 (4)
N20.0368 (6)0.0543 (6)0.0425 (5)−0.0017 (5)0.0042 (4)−0.0061 (4)
O10.1011 (12)0.0451 (6)0.0951 (9)−0.0188 (7)−0.0246 (9)0.0109 (6)
O20.0689 (8)0.0429 (5)0.0719 (6)−0.0015 (5)−0.0229 (6)0.0039 (5)
O30.0460 (6)0.0466 (5)0.0756 (7)−0.0154 (5)0.0170 (5)−0.0165 (5)
O40.0426 (6)0.0449 (5)0.0703 (6)−0.0043 (4)0.0187 (5)−0.0051 (5)
C1—O31.2869 (16)C11—H11A0.9700
C1—C21.4122 (18)C11—H11B0.9700
C1—C61.4418 (17)C12—C131.521 (2)
C2—C31.3744 (19)C12—H12A0.9700
C2—H2B0.9300C12—H12B0.9700
C3—O41.3355 (16)C13—N11.4716 (17)
C3—C41.4150 (19)C13—H13A0.9800
C4—C51.351 (2)C14—O11.207 (2)
C4—H4A0.9300C14—N11.396 (2)
C5—C61.415 (2)C14—C151.486 (2)
C5—H5A0.9300C15—C201.369 (2)
C6—C71.4101 (19)C15—C161.380 (2)
C7—N21.2933 (19)C16—C171.383 (3)
C7—H7A0.9300C16—H16A0.9300
C8—N21.4630 (17)C17—C181.361 (3)
C8—C91.528 (2)C17—H17A0.9300
C8—C131.5377 (19)C18—C191.388 (2)
C8—H8A0.9800C18—H18A0.9300
C9—C101.525 (2)C19—C201.382 (2)
C9—H9A0.9700C19—H19A0.9300
C9—H9B0.9700C20—C211.4833 (19)
C10—C111.518 (3)C21—O21.2073 (18)
C10—H10A0.9700C21—N11.4036 (18)
C10—H10B0.9700O3—H3A0.927 (9)
C11—C121.527 (2)O4—H4B0.90 (2)
O3—C1—C2122.46 (11)H11A—C11—H11B108.1
O3—C1—C6119.88 (12)C11—C12—C13110.13 (13)
C2—C1—C6117.66 (11)C11—C12—H12A109.6
C3—C2—C1121.25 (11)C13—C12—H12A109.6
C3—C2—H2B119.4C11—C12—H12B109.6
C1—C2—H2B119.4C13—C12—H12B109.6
O4—C3—C2123.82 (12)H12A—C12—H12B108.1
O4—C3—C4115.58 (12)N1—C13—C12111.77 (10)
C2—C3—C4120.60 (12)N1—C13—C8112.77 (11)
C5—C4—C3119.66 (13)C12—C13—C8111.04 (14)
C5—C4—H4A120.2N1—C13—H13A107.0
C3—C4—H4A120.2C12—C13—H13A107.0
C4—C5—C6121.77 (13)C8—C13—H13A107.0
C4—C5—H5A119.1O1—C14—N1124.41 (16)
C6—C5—H5A119.1O1—C14—C15128.97 (17)
C7—C6—C5120.39 (12)N1—C14—C15106.61 (12)
C7—C6—C1120.61 (12)C20—C15—C16121.12 (15)
C5—C6—C1118.98 (12)C20—C15—C14107.81 (13)
N2—C7—C6123.35 (13)C16—C15—C14131.07 (15)
N2—C7—H7A118.3C17—C16—C15118.15 (17)
C6—C7—H7A118.3C17—C16—H16A120.9
N2—C8—C9108.92 (11)C15—C16—H16A120.9
N2—C8—C13109.74 (12)C18—C17—C16120.68 (17)
C9—C8—C13109.34 (13)C18—C17—H17A119.7
N2—C8—H8A109.6C16—C17—H17A119.7
C9—C8—H8A109.6C17—C18—C19121.53 (17)
C13—C8—H8A109.6C17—C18—H18A119.2
C10—C9—C8111.36 (12)C19—C18—H18A119.2
C10—C9—H9A109.4C20—C19—C18117.58 (16)
C8—C9—H9A109.4C20—C19—H19A121.2
C10—C9—H9B109.4C18—C19—H19A121.2
C8—C9—H9B109.4C15—C20—C19120.90 (14)
H9A—C9—H9B108.0C15—C20—C21108.84 (13)
C9—C10—C11111.02 (17)C19—C20—C21130.27 (14)
C9—C10—H10A109.4O2—C21—N1125.52 (13)
C11—C10—H10A109.4O2—C21—C20128.60 (13)
C9—C10—H10B109.4N1—C21—C20105.88 (11)
C11—C10—H10B109.4C14—N1—C21110.67 (11)
H10A—C10—H10B108.0C14—N1—C13121.18 (12)
C12—C11—C10110.31 (18)C21—N1—C13128.09 (12)
C12—C11—H11A109.6C7—N2—C8125.40 (13)
C10—C11—H11A109.6C1—O3—H3A103.8 (13)
C12—C11—H11B109.6C3—O4—H4B110.7 (15)
C10—C11—H11B109.6
O3—C1—C2—C3−179.12 (13)C20—C15—C16—C17−1.7 (3)
C6—C1—C2—C30.89 (18)C14—C15—C16—C17178.88 (18)
C1—C2—C3—O4177.16 (12)C15—C16—C17—C180.0 (3)
C1—C2—C3—C4−2.5 (2)C16—C17—C18—C191.9 (3)
O4—C3—C4—C5−178.20 (16)C17—C18—C19—C20−2.1 (3)
C2—C3—C4—C51.5 (3)C16—C15—C20—C191.5 (2)
C3—C4—C5—C61.1 (3)C14—C15—C20—C19−178.98 (14)
C4—C5—C6—C7178.57 (16)C16—C15—C20—C21−178.48 (14)
C4—C5—C6—C1−2.7 (3)C14—C15—C20—C211.04 (17)
O3—C1—C6—C70.4 (2)C18—C19—C20—C150.4 (2)
C2—C1—C6—C7−179.62 (11)C18—C19—C20—C21−179.62 (14)
O3—C1—C6—C5−178.38 (14)C15—C20—C21—O2176.27 (16)
C2—C1—C6—C51.6 (2)C19—C20—C21—O2−3.7 (3)
C5—C6—C7—N2−178.23 (14)C15—C20—C21—N1−3.42 (16)
C1—C6—C7—N23.0 (2)C19—C20—C21—N1176.60 (15)
N2—C8—C9—C10176.03 (17)O1—C14—N1—C21177.16 (18)
C13—C8—C9—C1056.1 (2)C15—C14—N1—C21−4.00 (17)
C8—C9—C10—C11−56.8 (2)O1—C14—N1—C13−0.2 (3)
C9—C10—C11—C1257.0 (3)C15—C14—N1—C13178.65 (12)
C10—C11—C12—C13−57.9 (3)O2—C21—N1—C14−175.12 (16)
C11—C12—C13—N1−174.55 (17)C20—C21—N1—C144.58 (16)
C11—C12—C13—C858.6 (2)O2—C21—N1—C132.0 (2)
N2—C8—C13—N156.93 (16)C20—C21—N1—C13−178.30 (12)
C9—C8—C13—N1176.34 (13)C12—C13—N1—C1489.91 (19)
N2—C8—C13—C12−176.74 (13)C8—C13—N1—C14−144.14 (14)
C9—C8—C13—C12−57.33 (18)C12—C13—N1—C21−86.94 (19)
O1—C14—C15—C20−179.50 (19)C8—C13—N1—C2139.01 (19)
N1—C14—C15—C201.73 (18)C6—C7—N2—C8−178.75 (12)
O1—C14—C15—C160.0 (3)C9—C8—N2—C7124.08 (16)
N1—C14—C15—C16−178.81 (17)C13—C8—N2—C7−116.25 (15)
D—H···AD—HH···AD···AD—H···A
O3—H3A···N20.93 (1)1.69 (1)2.5656 (16)157.(2)
O4—H4B···O3i0.90 (2)1.66 (2)2.5478 (15)170 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯N20.93 (1)1.69 (1)2.5656 (16)157 (2)
O4—H4B⋯O3i0.90 (2)1.66 (2)2.5478 (15)170 (2)

Symmetry code: (i) .

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