Literature DB >> 21836624

Real-time sequencing.

Thomas D Otto.   

Abstract

Mesh：

Year:  2011        PMID： 21836624     DOI： 10.1038/nrmicro2638

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN： 1740-1526            Impact factor:   60.633


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  3 in total

1.  The origin of the Haitian cholera outbreak strain.

Authors:  Chen-Shan Chin; Jon Sorenson; Jason B Harris; William P Robins; Richelle C Charles; Roger R Jean-Charles; James Bullard; Dale R Webster; Andrew Kasarskis; Paul Peluso; Ellen E Paxinos; Yoshiharu Yamaichi; Stephen B Calderwood; John J Mekalanos; Eric E Schadt; Matthew K Waldor
Journal:  N Engl J Med       Date:  2010-12-09       Impact factor: 91.245

2.  Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology.

Authors:  Alexander Mellmann; Dag Harmsen; Craig A Cummings; Emily B Zentz; Shana R Leopold; Alain Rico; Karola Prior; Rafael Szczepanowski; Yongmei Ji; Wenlan Zhang; Stephen F McLaughlin; John K Henkhaus; Benjamin Leopold; Martina Bielaszewska; Rita Prager; Pius M Brzoska; Richard L Moore; Simone Guenther; Jonathan M Rothberg; Helge Karch
Journal:  PLoS One       Date:  2011-07-20       Impact factor: 3.240

3.  Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC).

Authors:  Elzbieta Brzuszkiewicz; Andrea Thürmer; Jörg Schuldes; Andreas Leimbach; Heiko Liesegang; Frauke-Dorothee Meyer; Jürgen Boelter; Heiko Petersen; Gerhard Gottschalk; Rolf Daniel
Journal:  Arch Microbiol       Date:  2011-06-29       Impact factor: 2.552
  3 in total
  7 in total

1.  A Benchmark Study on Error Assessment and Quality Control of CCS Reads Derived from the PacBio RS.

Authors:  Xiaoli Jiao; Xin Zheng; Liang Ma; Geetha Kutty; Emile Gogineni; Qiang Sun; Brad T Sherman; Xiaojun Hu; Kristine Jones; Castle Raley; Bao Tran; David J Munroe; Robert Stephens; Dun Liang; Tomozumi Imamichi; Joseph A Kovacs; Richard A Lempicki; Da Wei Huang
Journal:  J Data Mining Genomics Proteomics       Date:  2013-07-31

2.  Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak.

Authors:  Claudio U Köser; Matthew T G Holden; Matthew J Ellington; Edward J P Cartwright; Nicholas M Brown; Amanda L Ogilvy-Stuart; Li Yang Hsu; Claire Chewapreecha; Nicholas J Croucher; Simon R Harris; Mandy Sanders; Mark C Enright; Gordon Dougan; Stephen D Bentley; Julian Parkhill; Louise J Fraser; Jason R Betley; Ole B Schulz-Trieglaff; Geoffrey P Smith; Sharon J Peacock
Journal:  N Engl J Med       Date:  2012-06-14       Impact factor: 91.245

Review 3.  Routine use of microbial whole genome sequencing in diagnostic and public health microbiology.

Authors:  Claudio U Köser; Matthew J Ellington; Edward J P Cartwright; Stephen H Gillespie; Nicholas M Brown; Mark Farrington; Matthew T G Holden; Gordon Dougan; Stephen D Bentley; Julian Parkhill; Sharon J Peacock
Journal:  PLoS Pathog       Date:  2012-08-02       Impact factor: 6.823

4.  Integrated whole-genome sequencing and temporospatial analysis of a continuing Group A Streptococcus epidemic.

Authors:  Nahuel Fittipaldi; Gregory J Tyrrell; Donald E Low; Irene Martin; David Lin; Kumar L Hari; James M Musser
Journal:  Emerg Microbes Infect       Date:  2013-03-27       Impact factor: 7.163

5.  Profiling of Oral Microbiota in Early Childhood Caries Using Single-Molecule Real-Time Sequencing.

Authors:  Yuan Wang; Jie Zhang; Xi Chen; Wen Jiang; Sa Wang; Lei Xu; Yan Tu; Pei Zheng; Ying Wang; Xiaolong Lin; Hui Chen
Journal:  Front Microbiol       Date:  2017-11-15       Impact factor: 5.640

6.  Efficient depletion of host DNA contamination in malaria clinical sequencing.

Authors:  Samuel O Oyola; Yong Gu; Magnus Manske; Thomas D Otto; John O'Brien; Daniel Alcock; Bronwyn Macinnis; Matthew Berriman; Chris I Newbold; Dominic P Kwiatkowski; Harold P Swerdlow; Michael A Quail
Journal:  J Clin Microbiol       Date:  2012-12-05       Impact factor: 5.948

7.  Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes.

Authors:  Rolf S Kaas; Carsten Friis; David W Ussery; Frank M Aarestrup
Journal:  BMC Genomics       Date:  2012-10-31       Impact factor: 3.969
  7 in total

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