Literature DB >> 21831640

A role for systems epidemiology in tuberculosis research.

Iñaki Comas1, Sebastien Gagneux.   

Abstract

Despite being a curable disease, tuberculosis (TB) killed more people in 2009 than during any previous year in history. Progress in TB research has been slow, and remains burdened by important gaps in our knowledge of the basic biology of Mycobacterium tuberculosis, the causative agent of TB, and its interaction with the human host. Fortunately, major systems biology initiatives have recently been launched that will help fill some of these gaps. However, to fully comprehend TB and control this disease globally, current systems biological approaches will not suffice. The influence of host and pathogen diversity, changes in human demography, and socioeconomic and environmental factors will also need to be considered. Such a multidisciplinary approach might be best described as 'systems epidemiology' in an effort to overcome the traditional boundaries between basic biology and classical epidemiology.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21831640      PMCID: PMC3184389          DOI: 10.1016/j.tim.2011.07.002

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  78 in total

1.  Ancient urbanization predicts genetic resistance to tuberculosis.

Authors:  Ian Barnes; Anna Duda; Oliver G Pybus; Mark G Thomas
Journal:  Evolution       Date:  2010-10-07       Impact factor: 3.694

2.  Does M. tuberculosis genomic diversity explain disease diversity?

Authors:  Mireilla Coscolla; Sebastien Gagneux
Journal:  Drug Discov Today Dis Mech       Date:  2010

3.  Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites.

Authors:  Michaela M Gutacker; Barun Mathema; Hanna Soini; Elena Shashkina; Barry N Kreiswirth; Edward A Graviss; James M Musser
Journal:  J Infect Dis       Date:  2005-11-28       Impact factor: 5.226

4.  Spectrum of latent tuberculosis - existing tests cannot resolve the underlying phenotypes.

Authors:  Madhukar Pai
Journal:  Nat Rev Microbiol       Date:  2010-01-19       Impact factor: 60.633

Review 5.  Next-generation DNA sequencing methods.

Authors:  Elaine R Mardis
Journal:  Annu Rev Genomics Hum Genet       Date:  2008       Impact factor: 8.929

6.  Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set.

Authors:  Ingrid Filliol; Alifiya S Motiwala; Magali Cavatore; Weihong Qi; Manzour Hernando Hazbón; Miriam Bobadilla del Valle; Janet Fyfe; Lourdes García-García; Nalin Rastogi; Christophe Sola; Thierry Zozio; Marta Inírida Guerrero; Clara Inés León; Jonathan Crabtree; Sam Angiuoli; Kathleen D Eisenach; Riza Durmaz; Moses L Joloba; Adrian Rendón; José Sifuentes-Osornio; Alfredo Ponce de León; M Donald Cave; Robert Fleischmann; Thomas S Whittam; David Alland
Journal:  J Bacteriol       Date:  2006-01       Impact factor: 3.490

7.  Efficacy of BCG vaccine in the prevention of tuberculosis. Meta-analysis of the published literature.

Authors:  G A Colditz; T F Brewer; C S Berkey; M E Wilson; E Burdick; H V Fineberg; F Mosteller
Journal:  JAMA       Date:  1994-03-02       Impact factor: 56.272

8.  Autophagy gene variant IRGM -261T contributes to protection from tuberculosis caused by Mycobacterium tuberculosis but not by M. africanum strains.

Authors:  Christopher D Intemann; Thorsten Thye; Stefan Niemann; Edmund N L Browne; Margaret Amanua Chinbuah; Anthony Enimil; John Gyapong; Ivy Osei; Ellis Owusu-Dabo; Susanne Helm; Sabine Rüsch-Gerdes; Rolf D Horstmann; Christian G Meyer
Journal:  PLoS Pathog       Date:  2009-09-11       Impact factor: 6.823

9.  Variable host-pathogen compatibility in Mycobacterium tuberculosis.

Authors:  Sebastien Gagneux; Kathryn DeRiemer; Tran Van; Midori Kato-Maeda; Bouke C de Jong; Sujatha Narayanan; Mark Nicol; Stefan Niemann; Kristin Kremer; M Cristina Gutierrez; Markus Hilty; Philip C Hopewell; Peter M Small
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-13       Impact factor: 11.205

10.  Silent nucleotide polymorphisms and a phylogeny for Mycobacterium tuberculosis.

Authors:  Lucy Baker; Tim Brown; Martin C Maiden; Francis Drobniewski
Journal:  Emerg Infect Dis       Date:  2004-09       Impact factor: 6.883

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  29 in total

Review 1.  Ecology and evolution of Mycobacterium tuberculosis.

Authors:  Sebastien Gagneux
Journal:  Nat Rev Microbiol       Date:  2018-02-19       Impact factor: 60.633

Review 2.  Old and new selective pressures on Mycobacterium tuberculosis.

Authors:  Daniela Brites; Sebastien Gagneux
Journal:  Infect Genet Evol       Date:  2011-08-17       Impact factor: 3.342

Review 3.  Translating basic science insight into public health action for multidrug- and extensively drug-resistant tuberculosis.

Authors:  Nicholas D Walter; Michael Strong; Robert Belknap; Diane J Ordway; Charles L Daley; Edward D Chan
Journal:  Respirology       Date:  2012-07       Impact factor: 6.424

Review 4.  Importance of differential identification of Mycobacterium tuberculosis strains for understanding differences in their prevalence, treatment efficacy, and vaccine development.

Authors:  Hansong Chae; Sung Jae Shin
Journal:  J Microbiol       Date:  2018-05-02       Impact factor: 3.422

Review 5.  The heterogeneous evolution of multidrug-resistant Mycobacterium tuberculosis.

Authors:  Borna Müller; Sonia Borrell; Graham Rose; Sebastien Gagneux
Journal:  Trends Genet       Date:  2012-12-13       Impact factor: 11.639

Review 6.  Single nucleotide polymorphisms in Mycobacterium tuberculosis and the need for a curated database.

Authors:  David Stucki; Sebastien Gagneux
Journal:  Tuberculosis (Edinb)       Date:  2012-12-21       Impact factor: 3.131

Review 7.  Genomic insights into tuberculosis.

Authors:  James E Galagan
Journal:  Nat Rev Genet       Date:  2014-03-25       Impact factor: 53.242

8.  After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection.

Authors:  Amine Namouchi; Xavier Didelot; Ulrike Schöck; Brigitte Gicquel; Eduardo P C Rocha
Journal:  Genome Res       Date:  2012-02-29       Impact factor: 9.043

Review 9.  Consequences of genomic diversity in Mycobacterium tuberculosis.

Authors:  Mireia Coscolla; Sebastien Gagneux
Journal:  Semin Immunol       Date:  2014-10-22       Impact factor: 11.130

10.  Diversity of Mycobacterium tuberculosis isolates from new pulmonary tuberculosis cases in Addis Ababa, Ethiopia.

Authors:  Adane Mihret; Yonas Bekele; Andre G Loxton; Annemie M Jordan; Lawrence Yamuah; Abraham Aseffa; Rawleigh Howe; Gerhard Walzl
Journal:  Tuberc Res Treat       Date:  2012-11-22
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