Literature DB >> 21826285

The replication-transcription conflict.

Panos Soultanas1.   

Abstract

In response to environmental and nutritional stimuli, a whole array of proteins remodel genome architecture, activate or transcribe genes, suppress genes, repair lesions and base-modifications, faithfully replicate and safely separate the parental and daughter genomes during cell division. Negotiating and resolving conflicts of genome trafficking is essential for genome stability.

Entities:  

Year:  2011        PMID: 21826285      PMCID: PMC3149691          DOI: 10.4161/trns.2.3.15908

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  30 in total

1.  E. coli Transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation.

Authors:  Joo-Seop Park; Michael T Marr; Jeffrey W Roberts
Journal:  Cell       Date:  2002-06-14       Impact factor: 41.582

2.  Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase.

Authors:  Natacha Opalka; Mark Chlenov; Pablo Chacon; William J Rice; Willy Wriggers; Seth A Darst
Journal:  Cell       Date:  2003-08-08       Impact factor: 41.582

Review 3.  The replication-related organization of bacterial genomes.

Authors:  Eduardo P C Rocha
Journal:  Microbiology       Date:  2004-06       Impact factor: 2.777

4.  Cooperation between translating ribosomes and RNA polymerase in transcription elongation.

Authors:  Sergey Proshkin; A Rachid Rahmouni; Alexander Mironov; Evgeny Nudler
Journal:  Science       Date:  2010-04-23       Impact factor: 47.728

Review 5.  Replication in context: dynamic regulation of DNA replication patterns in metazoans.

Authors:  Mirit I Aladjem
Journal:  Nat Rev Genet       Date:  2007-07-10       Impact factor: 53.242

6.  Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA.

Authors:  Kaori Sasaki; Toyoyuki Ose; Naoaki Okamoto; Katsumi Maenaka; Taku Tanaka; Hisao Masai; Mihoko Saito; Tsuyoshi Shirai; Daisuke Kohda
Journal:  EMBO J       Date:  2007-04-26       Impact factor: 11.598

7.  Replication forks blocked by protein-DNA complexes have limited stability in vitro.

Authors:  Peter McGlynn; Colin P Guy
Journal:  J Mol Biol       Date:  2008-05-29       Impact factor: 5.469

Review 8.  Avoiding and resolving conflicts between DNA replication and transcription.

Authors:  Christian J Rudolph; Paraminder Dhillon; Timothy Moore; Robert G Lloyd
Journal:  DNA Repair (Amst)       Date:  2007-03-30

9.  Structural basis for bacterial transcription-coupled DNA repair.

Authors:  Alexandra M Deaconescu; Anna L Chambers; Abigail J Smith; Bryce E Nickels; Ann Hochschild; Nigel J Savery; Seth A Darst
Journal:  Cell       Date:  2006-02-10       Impact factor: 41.582

10.  The replisome uses mRNA as a primer after colliding with RNA polymerase.

Authors:  Richard T Pomerantz; Mike O'Donnell
Journal:  Nature       Date:  2008-11-19       Impact factor: 49.962

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  9 in total

1.  Interaction with Single-stranded DNA-binding Protein Stimulates Escherichia coli Ribonuclease HI Enzymatic Activity.

Authors:  Christine Petzold; Aimee H Marceau; Katherine H Miller; Susan Marqusee; James L Keck
Journal:  J Biol Chem       Date:  2015-04-22       Impact factor: 5.157

2.  Transcription leads to pervasive replisome instability in bacteria.

Authors:  Sarah M Mangiameli; Christopher N Merrikh; Paul A Wiggins; Houra Merrikh
Journal:  Elife       Date:  2017-01-16       Impact factor: 8.140

Review 3.  Chromosomal replication initiation machinery of low-G+C-content Firmicutes.

Authors:  Geoffrey S Briggs; Wiep Klaas Smits; Panos Soultanas
Journal:  J Bacteriol       Date:  2012-07-13       Impact factor: 3.490

Review 4.  Loading mechanisms of ring helicases at replication origins.

Authors:  Panos Soultanas
Journal:  Mol Microbiol       Date:  2012-03-15       Impact factor: 3.501

5.  Dissection of the beta-globin replication-initiation region reveals specific requirements for replicator elements during gene amplification.

Authors:  Naoya Okada; Noriaki Shimizu
Journal:  PLoS One       Date:  2013-10-04       Impact factor: 3.240

6.  Transcription activity contributes to the firing of non-constitutive origins in African trypanosomes helping to maintain robustness in S-phase duration.

Authors:  Marcelo S da Silva; Gustavo R Cayres-Silva; Marcela O Vitarelli; Paula A Marin; Priscila M Hiraiwa; Christiane B Araújo; Bruno B Scholl; Andrea R Ávila; Richard McCulloch; Marcelo S Reis; Maria Carolina Elias
Journal:  Sci Rep       Date:  2019-12-06       Impact factor: 4.379

Review 7.  The enigmatic role of Mfd in replication-transcription conflicts in bacteria.

Authors:  Mark Ragheb; Houra Merrikh
Journal:  DNA Repair (Amst)       Date:  2019-07-08

8.  Analysis of the Plastid Genome Sequence During Maize Seedling Development.

Authors:  Diwaker Tripathi; Delene J Oldenburg; Arnold J Bendich
Journal:  Front Genet       Date:  2022-04-26       Impact factor: 4.772

9.  Coupling of DNA Replication and Negative Feedback Controls Gene Expression for Cell-Fate Decisions.

Authors:  Qiuyan Shao; Michael G Cortes; Jimmy T Trinh; Jingwen Guan; Gábor Balázsi; Lanying Zeng
Journal:  iScience       Date:  2018-07-26
  9 in total

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