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Literature DB >> 21826283

Time-based patterning in development: The role of oscillating gene expression.

Miguel A Moreno-Risueno¹, Philip N Benfey.

Abstract

Oscillating gene expression is a mechanism of patterning during development in both plants and animals. In vertebrates, oscillating gene expression establishes the musculoskeletal precursors (somites), while in plant roots it establishes the position of future organs (lateral roots). Both mechanisms constitute a specialized type of biological clock that converts temporal information into precise spatial patterns. Similarities, differences, and their functionality in organisms that evolved independently are discussed.

Year: 2011 PMID： 21826283 PMCID： PMC3149689 DOI： 10.4161/trns.2.3.15637

Source DB: PubMed Journal: Transcription ISSN： 2154-1272

33 in total

Review 1. The segmentation clock: converting embryonic time into spatial pattern.

Authors: Olivier Pourquié
Journal: Science Date: 2003-07-18 Impact factor: 47.728

Review 2. Ultradian oscillations in Notch signaling regulate dynamic biological events.

Authors: Ryoichiro Kageyama; Yasutaka Niwa; Hiromi Shimojo; Taeko Kobayashi; Toshiyuki Ohtsuka
Journal: Curr Top Dev Biol Date: 2010 Impact factor: 4.897

Review 3. Circadian oscillators in eukaryotes.

Authors: Ingunn W Jolma; Ole Didrik Laerum; Cathrine Lillo; Peter Ruoff
Journal: Wiley Interdiscip Rev Syst Biol Med Date: 2010 Sep-Oct

4. Control of segment number in vertebrate embryos.

Authors: Céline Gomez; Ertuğrul M Ozbudak; Joshua Wunderlich; Diana Baumann; Julian Lewis; Olivier Pourquié
Journal: Nature Date: 2008-06-18 Impact factor: 49.962

5. Intercellular movement of the putative transcription factor SHR in root patterning.

Authors: K Nakajima; G Sena; T Nawy; P N Benfey
Journal: Nature Date: 2001-09-20 Impact factor: 49.962

6. Instability of Hes7 protein is crucial for the somite segmentation clock.

Authors: Hiromi Hirata; Yasumasa Bessho; Hiroshi Kokubu; Yoshito Masamizu; Shuichi Yamada; Julian Lewis; Ryoichiro Kageyama
Journal: Nat Genet Date: 2004-05-30 Impact factor: 38.330

Review 7. Design principles of biochemical oscillators.

Authors: Béla Novák; John J Tyson
Journal: Nat Rev Mol Cell Biol Date: 2008-10-30 Impact factor: 94.444

8. Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis.

Authors: Ive De Smet; Takuya Tetsumura; Bert De Rybel; Nicolas Frei dit Frey; Laurent Laplaze; Ilda Casimiro; Ranjan Swarup; Mirande Naudts; Steffen Vanneste; Dominique Audenaert; Dirk Inzé; Malcolm J Bennett; Tom Beeckman
Journal: Development Date: 2007-01-10 Impact factor: 6.868

9. Alignment between PIN1 polarity and microtubule orientation in the shoot apical meristem reveals a tight coupling between morphogenesis and auxin transport.

Authors: Marcus G Heisler; Olivier Hamant; Pawel Krupinski; Magalie Uyttewaal; Carolyn Ohno; Henrik Jönsson; Jan Traas; Elliot M Meyerowitz
Journal: PLoS Biol Date: 2010-10-19 Impact factor: 8.029

10. Comparison of pattern detection methods in microarray time series of the segmentation clock.

Authors: Mary-Lee Dequéant; Sebastian Ahnert; Herbert Edelsbrunner; Thomas M A Fink; Earl F Glynn; Gaye Hattem; Andrzej Kudlicki; Yuriy Mileyko; Jason Morton; Arcady R Mushegian; Lior Pachter; Maga Rowicka; Anne Shiu; Bernd Sturmfels; Olivier Pourquié
Journal: PLoS One Date: 2008-08-06 Impact factor: 3.240

12 in total

Review 1. Transcriptional switches direct plant organ formation and patterning.

Authors: Miguel A Moreno-Risueno; Jaimie M Van Norman; Philip N Benfey
Journal: Curr Top Dev Biol Date: 2012 Impact factor: 4.897

2. Ion channels in plants: from bioelectricity, via signaling, to behavioral actions.

Authors: František Baluška; Stefano Mancuso
Journal: Plant Signal Behav Date: 2012-12-06

3. Tuning a timing device that regulates lateral root development in rice.

Authors: Lucila Andrea Acevedo; Nathan E Korson; Justin M Williams; Linda K Nicholson
Journal: J Biomol NMR Date: 2019-08-12 Impact factor: 2.835

4. Abiotic stress-induced oscillations in steady-state transcript levels of Group 3 LEA protein genes in the moss, Physcomitrella patens.

Authors: Suhas Shinde; Rupali Shinde; Frances Downey; Carl K-Y Ng
Journal: Plant Signal Behav Date: 2012-12-06

Review 5. Circadian rhythms and the HPA axis: A systems view.

Authors: Ioannis P Androulakis
Journal: WIREs Mech Dis Date: 2021-01-12

6. Targeted cell elimination reveals an auxin-guided biphasic mode of lateral root initiation.

Authors: Peter Marhavý; Juan Carlos Montesinos; Anas Abuzeineh; Daniel Van Damme; Joop E M Vermeer; Jerôme Duclercq; Hana Rakusová; Petra Nováková; Jiři Friml; Niko Geldner; Eva Benková
Journal: Genes Dev Date: 2016-02-15 Impact factor: 11.361

Review 7. Nature's Electric Potential: A Systematic Review of the Role of Bioelectricity in Wound Healing and Regenerative Processes in Animals, Humans, and Plants.

Authors: Sheena E B Tyler
Journal: Front Physiol Date: 2017-09-04 Impact factor: 4.566

8. An auxin-regulable oscillatory circuit drives the root clock in Arabidopsis.

Authors: Juan Perianez-Rodriguez; Marcos Rodriguez; Marco Marconi; Estefano Bustillo-Avendaño; Guy Wachsman; Alvaro Sanchez-Corrionero; Hugues De Gernier; Javier Cabrera; Pablo Perez-Garcia; Inmaculada Gude; Angela Saez; Laura Serrano-Ron; Tom Beeckman; Philip N Benfey; Alfonso Rodríguez-Patón; Juan Carlos Del Pozo; Krzysztof Wabnik; Miguel A Moreno-Risueno
Journal: Sci Adv Date: 2021-01-01 Impact factor: 14.136

9. Root apex transition zone as oscillatory zone.

Authors: František Baluška; Stefano Mancuso
Journal: Front Plant Sci Date: 2013-10-02 Impact factor: 5.753

Review 10. On Having No Head: Cognition throughout Biological Systems.

Authors: František Baluška; Michael Levin
Journal: Front Psychol Date: 2016-06-21