Literature DB >> 21822272

TopFIND, a knowledgebase linking protein termini with function.

Philipp F Lange, Christopher M Overall.   

Abstract

Mesh：

Year:  2011        PMID： 21822272     DOI： 10.1038/nmeth.1669

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  8 in total

1.  Complementary positional proteomics for screening substrates of endo- and exoproteases.

Authors:  Petra Van Damme; An Staes; Silvia Bronsoms; Kenny Helsens; Niklaas Colaert; Evy Timmerman; Francesc X Aviles; Joël Vandekerckhove; Kris Gevaert
Journal:  Nat Methods       Date:  2010-06-06       Impact factor: 28.547

2.  Proteome-wide analysis of protein carboxy termini: C terminomics.

Authors:  Oliver Schilling; Olivier Barré; Pitter F Huesgen; Christopher M Overall
Journal:  Nat Methods       Date:  2010-06-06       Impact factor: 28.547

Review 3.  MS-driven protease substrate degradomics.

Authors:  Francis Impens; Niklaas Colaert; Kenny Helsens; Kim Plasman; Petra Van Damme; Joël Vandekerckhove; Kris Gevaert
Journal:  Proteomics       Date:  2010-03       Impact factor: 3.984

4.  N-terminal acetylation of cellular proteins creates specific degradation signals.

Authors:  Cheol-Sang Hwang; Anna Shemorry; Alexander Varshavsky
Journal:  Science       Date:  2010-01-28       Impact factor: 47.728

5.  Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products.

Authors:  Oded Kleifeld; Alain Doucet; Ulrich auf dem Keller; Anna Prudova; Oliver Schilling; Rajesh K Kainthan; Amanda E Starr; Leonard J Foster; Jayachandran N Kizhakkedathu; Christopher M Overall
Journal:  Nat Biotechnol       Date:  2010-03-07       Impact factor: 54.908

6.  Overexpression of glutaminyl cyclase, the enzyme responsible for pyroglutamate A{beta} formation, induces behavioral deficits, and glutaminyl cyclase knock-out rescues the behavioral phenotype in 5XFAD mice.

Authors:  Sadim Jawhar; Oliver Wirths; Stephan Schilling; Sigrid Graubner; Hans-Ulrich Demuth; Thomas A Bayer
Journal:  J Biol Chem       Date:  2010-12-10       Impact factor: 5.157

Review 7.  Metadegradomics: toward in vivo quantitative degradomics of proteolytic post-translational modifications of the cancer proteome.

Authors:  Alain Doucet; Georgina S Butler; David Rodríguez; Anna Prudova; Christopher M Overall
Journal:  Mol Cell Proteomics       Date:  2008-07-02       Impact factor: 5.911

8.  MEROPS: the peptidase database.

Authors:  Neil D Rawlings; Alan J Barrett; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2009-11-05       Impact factor: 16.971
  8 in total
  40 in total

1.  Unbiased selective isolation of protein N-terminal peptides from complex proteome samples using phospho tagging (PTAG) and TiO(2)-based depletion.

Authors:  Geert P M Mommen; Bas van de Waterbeemd; Hugo D Meiring; Gideon Kersten; Albert J R Heck; Ad P J M de Jong
Journal:  Mol Cell Proteomics       Date:  2012-06-22       Impact factor: 5.911

2.  Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates.

Authors:  Oded Kleifeld; Alain Doucet; Anna Prudova; Ulrich auf dem Keller; Magda Gioia; Jayachandran N Kizhakkedathu; Christopher M Overall
Journal:  Nat Protoc       Date:  2011-09-22       Impact factor: 13.491

Review 3.  Proteolytic post-translational modification of proteins: proteomic tools and methodology.

Authors:  Lindsay D Rogers; Christopher M Overall
Journal:  Mol Cell Proteomics       Date:  2013-07-25       Impact factor: 5.911

4.  In vivo assessment of protease dynamics in cutaneous wound healing by degradomics analysis of porcine wound exudates.

Authors:  Fabio Sabino; Olivia Hermes; Fabian E Egli; Tobias Kockmann; Pascal Schlage; Pierre Croizat; Jayachandran N Kizhakkedathu; Hans Smola; Ulrich auf dem Keller
Journal:  Mol Cell Proteomics       Date:  2014-12-16       Impact factor: 5.911

Review 5.  Proteolysis mediated by cysteine cathepsins and legumain-recent advances and cell biological challenges.

Authors:  Klaudia Brix; Joseph McInnes; Alaa Al-Hashimi; Maren Rehders; Tripti Tamhane; Mads H Haugen
Journal:  Protoplasma       Date:  2014-11-16       Impact factor: 3.356

6.  Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes.

Authors:  Ylva Ivarsson; Roland Arnold; Megan McLaughlin; Satra Nim; Rakesh Joshi; Debashish Ray; Bernard Liu; Joan Teyra; Tony Pawson; Jason Moffat; Shawn Shun-Cheng Li; Sachdev S Sidhu; Philip M Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-03       Impact factor: 11.205

7.  Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications.

Authors:  Gilbert S Omenn; Lydie Lane; Emma K Lundberg; Ronald C Beavis; Christopher M Overall; Eric W Deutsch
Journal:  J Proteome Res       Date:  2016-09-20       Impact factor: 4.466

Review 8.  Profiling protease activities by dynamic proteomics workflows.

Authors:  Diana Klingler; Markus Hardt
Journal:  Proteomics       Date:  2012-01-23       Impact factor: 3.984

9.  Formalin-Fixed, Paraffin-Embedded Tissues (FFPE) as a Robust Source for the Profiling of Native and Protease-Generated Protein Amino Termini.

Authors:  Zon Weng Lai; Juliane Weisser; Lars Nilse; Fabrizio Costa; Eva Keller; Martina Tholen; Jayachandran N Kizhakkedathu; Martin Biniossek; Peter Bronsert; Oliver Schilling
Journal:  Mol Cell Proteomics       Date:  2016-04-17       Impact factor: 5.911

10.  Systems-level analysis of proteolytic events in increased vascular permeability and complement activation in skin inflammation.

Authors:  Ulrich auf dem Keller; Anna Prudova; Ulrich Eckhard; Barbara Fingleton; Christopher M Overall
Journal:  Sci Signal       Date:  2013-01-15       Impact factor: 8.192
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