Literature DB >> 21820516

Solution structure and dynamics of ADF from Toxoplasma gondii.

Rahul Yadav1, Prem Prakash Pathak, Vaibhav Kumar Shukla, Anupam Jain, Shubhra Srivastava, Sarita Tripathi, S V S R Krishna Pulavarti, Simren Mehta, L David Sibley, Ashish Arora.   

Abstract

Toxoplasma gondii ADF (TgADF) belongs to a functional subtype characterized by strong G-actin sequestering activity and low F-actin severing activity. Among the characterized ADF/cofilin proteins, TgADF has the shortest length and is missing a C-terminal helix implicated in F-actin binding. In order to understand its characteristic properties, we have determined the solution structure of TgADF and studied its backbone dynamics from ¹⁵N-relaxation measurements. TgADF has conserved ADF/cofilin fold consisting of a central mixed β-sheet comprised of six β-strands that are partially surrounded by three α-helices and a C-terminal helical turn. The high G-actin sequestering activity of TgADF relies on highly structurally and dynamically optimized interactions between G-actin and G-actin binding surface of TgADF. The equilibrium dissociation constant for TgADF and rabbit muscle G-actin was 23.81 nM, as measured by ITC, which reflects very strong affinity of TgADF and G-actin interactions. The F-actin binding site of TgADF is partially formed, with a shortened F-loop that does not project out of the ellipsoid structure and a C-terminal helical turn in place of the C-terminal helix α4. Yet, it is more rigid than the F-actin binding site of Leishmania donovani cofilin. Experimental observations and structural features do not support the interaction of PIP2 with TgADF, and PIP2 does not affect the interaction of TgADF with G-actin. Overall, this study suggests that conformational flexibility of G-actin binding sites enhances the affinity of TgADF for G-actin, while conformational rigidity of F-actin binding sites of conventional ADF/cofilins is necessary for stable binding to F-actin.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21820516      PMCID: PMC3703439          DOI: 10.1016/j.jsb.2011.07.011

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  67 in total

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Authors:  P Lappalainen; E V Fedorov; A A Fedorov; S C Almo; D G Drubin
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3.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

Review 4.  The ADF homology (ADF-H) domain: a highly exploited actin-binding module.

Authors:  P Lappalainen; M M Kessels; M J Cope; D G Drubin
Journal:  Mol Biol Cell       Date:  1998-08       Impact factor: 4.138

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Authors:  J M Dobrowolski; I R Niesman; L D Sibley
Journal:  Cell Motil Cytoskeleton       Date:  1997

6.  Structure determination of yeast cofilin.

Authors:  A A Fedorov; P Lappalainen; E V Fedorov; D G Drubin; S C Almo
Journal:  Nat Struct Biol       Date:  1997-05

7.  Torsion angle dynamics for NMR structure calculation with the new program DYANA.

Authors:  P Güntert; C Mumenthaler; K Wüthrich
Journal:  J Mol Biol       Date:  1997-10-17       Impact factor: 5.469

8.  Induction of an acrosomal process in Toxoplasma gondii: visualization of actin filaments in a protozoan parasite.

Authors:  M K Shaw; L G Tilney
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

9.  Two Caenorhabditis elegans actin depolymerizing factor/cofilin proteins, encoded by the unc-60 gene, differentially regulate actin filament dynamics.

Authors:  S Ono; G M Benian
Journal:  J Biol Chem       Date:  1998-02-06       Impact factor: 5.157

10.  UNC-60B, an ADF/cofilin family protein, is required for proper assembly of actin into myofibrils in Caenorhabditis elegans body wall muscle.

Authors:  S Ono; D L Baillie; G M Benian
Journal:  J Cell Biol       Date:  1999-05-03       Impact factor: 10.539

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  11 in total

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Journal:  J Struct Funct Genomics       Date:  2013-08-27

2.  Solution structures and dynamics of ADF/cofilins UNC-60A and UNC-60B from Caenorhabditis elegans.

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Journal:  Biochem J       Date:  2015-01-01       Impact factor: 3.857

Review 3.  The apicomplexan glideosome and adhesins - Structures and function.

Authors:  Lauren E Boucher; Jürgen Bosch
Journal:  J Struct Biol       Date:  2015-03-09       Impact factor: 2.867

4.  Structural and functional divergence of the aldolase fold in Toxoplasma gondii.

Authors:  Michelle L Tonkin; Andrei S Halavaty; Raghavendran Ramaswamy; Jiapeng Ruan; Makoto Igarashi; Huân M Ngô; Martin J Boulanger
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Review 5.  Towards a molecular understanding of the apicomplexan actin motor: on a road to novel targets for malaria remedies?

Authors:  Esa Pekka Kumpula; Inari Kursula
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-04-16       Impact factor: 1.056

6.  Disassembly activity of actin-depolymerizing factor (ADF) is associated with distinct cellular processes in apicomplexan parasites.

Authors:  Silvia Haase; Dennis Zimmermann; Maya A Olshina; Mark Wilkinson; Fabio Fisher; Yan Hong Tan; Rebecca J Stewart; Christopher J Tonkin; Wilson Wong; David R Kovar; Jake Baum
Journal:  Mol Biol Cell       Date:  2015-07-08       Impact factor: 4.138

7.  Computational Study of the Binding Mechanism of Actin-Depolymerizing Factor 1 with Actin in Arabidopsis thaliana.

Authors:  Juan Du; Xue Wang; Chun-Hai Dong; Jian Ming Yang; Xiao Jun Yao
Journal:  PLoS One       Date:  2016-07-14       Impact factor: 3.240

8.  Structural and functional insight into ADF/cofilin from Trypanosoma brucei.

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Journal:  PLoS One       Date:  2013-01-09       Impact factor: 3.240

9.  A mechanism for actin filament severing by malaria parasite actin depolymerizing factor 1 via a low affinity binding interface.

Authors:  Wilson Wong; Andrew I Webb; Maya A Olshina; Giuseppe Infusini; Yan Hong Tan; Eric Hanssen; Bruno Catimel; Cristian Suarez; Melanie Condron; Fiona Angrisano; Thomas Nebi; David R Kovar; Jake Baum
Journal:  J Biol Chem       Date:  2013-12-26       Impact factor: 5.157

10.  Characterization of Sarcoptes scabiei cofilin gene and assessment of recombinant cofilin protein as an antigen in indirect-ELISA for diagnosis.

Authors:  Yu Zheng; Ran He; Manli He; Xiaobin Gu; Tao Wang; Weimin Lai; Xuerong Peng; Guangyou Yang
Journal:  BMC Infect Dis       Date:  2016-01-22       Impact factor: 3.090

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