Literature DB >> 21813715

Pyrosequencing for rapid molecular detection of rifampin and isoniazid resistance in Mycobacterium tuberculosis strains and clinical specimens.

N García-Sierra1, A Lacoma, C Prat, L Haba, J Maldonado, J Ruiz-Manzano, P Gavin, S Samper, V Ausina, J Domínguez.   

Abstract

The aim of this study was to evaluate a pyrosequencing method for the detection of Mycobacterium tuberculosis isolates resistant to rifampin and isoniazid using both clinical strains and clinical samples, comparing the results with those of the Bactec 460TB and GenoType MTBDRplus assays. In comparison to Bactec 460TB as the gold standard, the sensitivity of pyrosequencing for detecting isoniazid and rifampin resistance was 76.9% and 97.2%, respectively, for clinical strains, and the specificity was 97.2 and 97.9%, respectively. For clinical specimens, the sensitivity and specificity for both drugs were 85.7% and 100%, respectively. The overall concordance between pyrosequencing and the GenoType MTBDRplus assay for clinical strains was 99.1%, and for clinical samples, it was 98.2%. Pyrosequencing is a valuable tool for rifampin and isoniazid resistance detection.

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Year:  2011        PMID: 21813715      PMCID: PMC3187309          DOI: 10.1128/JCM.01239-11

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  25 in total

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Authors:  Matthew A Diggle; Stuart C Clarke
Journal:  Mol Biotechnol       Date:  2004-10       Impact factor: 2.695

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Journal:  J Clin Microbiol       Date:  1997-03       Impact factor: 5.948

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Journal:  Lancet       Date:  1993-03-13       Impact factor: 79.321

6.  Single-nucleotide polymorphism-based differentiation and drug resistance detection in Mycobacterium tuberculosis from isolates or directly from sputum.

Authors:  C Arnold; L Westland; G Mowat; A Underwood; J Magee; S Gharbia
Journal:  Clin Microbiol Infect       Date:  2005-02       Impact factor: 8.067

7.  Mutations at amino acid position 315 of the katG gene are associated with high-level resistance to isoniazid, other drug resistance, and successful transmission of Mycobacterium tuberculosis in the Netherlands.

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Journal:  J Infect Dis       Date:  2000-10-26       Impact factor: 5.226

8.  Mycobacterium tuberculosis is a natural mutant with an inactivated oxidative-stress regulatory gene: implications for sensitivity to isoniazid.

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Journal:  Mol Microbiol       Date:  1995-09       Impact factor: 3.501

9.  Single nucleotide polymorphisms in genes associated with isoniazid resistance in Mycobacterium tuberculosis.

Authors:  Srinivas V Ramaswamy; Robert Reich; Shu-Jun Dou; Linda Jasperse; Xi Pan; Audrey Wanger; Teresa Quitugua; Edward A Graviss
Journal:  Antimicrob Agents Chemother       Date:  2003-04       Impact factor: 5.191

Review 10.  Multidrug-resistant Mycobacterium tuberculosis: molecular perspectives.

Authors:  A Rattan; A Kalia; N Ahmad
Journal:  Emerg Infect Dis       Date:  1998 Apr-Jun       Impact factor: 6.883

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  15 in total

1.  Evaluation of pyrosequencing for detecting extensively drug-resistant Mycobacterium tuberculosis among clinical isolates from four high-burden countries.

Authors:  Kanchan Ajbani; Shou-Yean Grace Lin; Camilla Rodrigues; Duylinh Nguyen; Francine Arroyo; Janice Kaping; Lynn Jackson; Richard S Garfein; Donald Catanzaro; Kathleen Eisenach; Thomas C Victor; Valeru Crudu; Maria Tarcela Gler; Nazir Ismail; Edward Desmond; Antonino Catanzaro; Timothy C Rodwell
Journal:  Antimicrob Agents Chemother       Date:  2014-11-03       Impact factor: 5.191

2.  GenoType MTBDRsl for molecular detection of second-line-drug and ethambutol resistance in Mycobacterium tuberculosis strains and clinical samples.

Authors:  A Lacoma; N García-Sierra; C Prat; J Maldonado; J Ruiz-Manzano; L Haba; P Gavin; S Samper; V Ausina; J Domínguez
Journal:  J Clin Microbiol       Date:  2011-11-09       Impact factor: 5.948

3.  Evaluation of GenoFlow DR-MTB Array Test for Detection of Rifampin and Isoniazid Resistance in Mycobacterium tuberculosis.

Authors:  B Molina-Moya; G Kazdaglis; A Lacoma; C Prat; A Gómez; R Villar-Hernández; E García-García; L Haba; J Maldonado; S Samper; J Ruiz-Manzano; J Domínguez
Journal:  J Clin Microbiol       Date:  2016-02-10       Impact factor: 5.948

4.  Rapid, high-throughput detection of rifampin resistance and heteroresistance in Mycobacterium tuberculosis by use of sloppy molecular beacon melting temperature coding.

Authors:  Soumitesh Chakravorty; Harsheel Kothari; Bola Aladegbami; Eun Jin Cho; Jong Seok Lee; Sandy S Roh; Hyunchul Kim; Hyungkyung Kwak; Eun Gae Lee; Soo Hee Hwang; Padmapriya P Banada; Hassan Safi; Laura E Via; Sang-Nae Cho; Clifton E Barry; David Alland
Journal:  J Clin Microbiol       Date:  2012-04-25       Impact factor: 5.948

Review 5.  Matrix-assisted laser desorption ionization-time of flight mass spectrometry: a fundamental shift in the routine practice of clinical microbiology.

Authors:  Andrew E Clark; Erin J Kaleta; Amit Arora; Donna M Wolk
Journal:  Clin Microbiol Rev       Date:  2013-07       Impact factor: 26.132

6.  Pyrosequencing for rapid detection of extensively drug-resistant Mycobacterium tuberculosis in clinical isolates and clinical specimens.

Authors:  S-Y Grace Lin; Timothy C Rodwell; Thomas C Victor; Errin C Rider; Lucy Pham; Antonino Catanzaro; Edward P Desmond
Journal:  J Clin Microbiol       Date:  2013-11-27       Impact factor: 5.948

7.  Predicting extensively drug-resistant Mycobacterium tuberculosis phenotypes with genetic mutations.

Authors:  Timothy C Rodwell; Faramarz Valafar; James Douglas; Lishi Qian; Richard S Garfein; Ashu Chawla; Jessica Torres; Victoria Zadorozhny; Min Soo Kim; Matt Hoshide; Donald Catanzaro; Lynn Jackson; Grace Lin; Edward Desmond; Camilla Rodrigues; Kathy Eisenach; Thomas C Victor; Nazir Ismail; Valeru Crudu; Maria Tarcela Gler; Antonino Catanzaro
Journal:  J Clin Microbiol       Date:  2013-12-18       Impact factor: 5.948

8.  Comprehensive Whole-Genome Sequencing and Reporting of Drug Resistance Profiles on Clinical Cases of Mycobacterium tuberculosis in New York State.

Authors:  Joseph Shea; Tanya A Halse; Pascal Lapierre; Matthew Shudt; Donna Kohlerschmidt; Patrick Van Roey; Ronald Limberger; Jill Taylor; Vincent Escuyer; Kimberlee A Musser
Journal:  J Clin Microbiol       Date:  2017-04-05       Impact factor: 5.948

9.  Molecular Characterization of Mycobacterium tuberculosis Strains with TB-SPRINT.

Authors:  Barbara Molina-Moya; Michel Kiréopori Gomgnimbou; Carmen Lafoz; Alicia Lacoma; Cristina Prat; Guislaine Refrégier; Sofia Samper; Jose Dominguez; Christophe Sola
Journal:  Am J Trop Med Hyg       Date:  2017-07-19       Impact factor: 2.345

10.  Novel katG mutations causing isoniazid resistance in clinical M. tuberculosis isolates.

Authors:  Jessica N Torres; Lynthia V Paul; Timothy C Rodwell; Thomas C Victor; Anu M Amallraja; Afif Elghraoui; Amy P Goodmanson; Sarah M Ramirez-Busby; Ashu Chawla; Victoria Zadorozhny; Elizabeth M Streicher; Frederick A Sirgel; Donald Catanzaro; Camilla Rodrigues; Maria Tarcela Gler; Valeru Crudu; Antonino Catanzaro; Faramarz Valafar
Journal:  Emerg Microbes Infect       Date:  2015-07-15       Impact factor: 7.163

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