| Literature DB >> 21811447 |
Benjamin Auffarth1, Agustín Gutierrez-Galvez, Santiago Marco.
Abstract
The relationship between molecular properties of odorants and neural activities is arguably one of the most important issues in olfaction and the rules governing this relationship are still not clear. In the olfactory bulb (OB), glomeruli relay olfactory information to second-order neurons which in turn project to cortical areas. We investigate relevance of odorant properties, spatial localization of glomerular coding sites, and size of coding zones in a dataset of [(14)C] 2-deoxyglucose images of glomeruli over the entire OB of the rat. We relate molecular properties to activation of glomeruli in the OB using a non-parametric statistical test and a support-vector machine classification study. Our method permits to systematically map the topographic representation of various classes of odorants in the OB. Our results suggest many localized coding sites for particular molecular properties and some molecular properties that could form the basis for a spatial map of olfactory information. We found that alkynes, alkanes, alkenes, and amines affect activation maps very strongly as compared to other properties and that amines, sulfur-containing compounds, and alkynes have small zones and high relevance to activation changes, while aromatics, alkanes, and carboxylics acid recruit very big zones in the dataset. Results suggest a local spatial encoding for molecular properties.Entities:
Keywords: glomeruli; odorants; olfactory bulb; olfactory coding; property–activity relationship
Year: 2011 PMID: 21811447 PMCID: PMC3140649 DOI: 10.3389/fnsys.2011.00062
Source DB: PubMed Journal: Front Syst Neurosci ISSN: 1662-5137
Figure 1Ventral-centered chart of the glomerular layer.
Figure 4Classification performance for aromatic property. The ordinate stands for the number of sampled points for classification. Curves depict performance in AUC with taking most representative points (solid line), randomly sampled points (dashed line), and the difference between the two (dash-dotted line).
Figure 2Localization of molecular properties: maps with coding zones for various odorant properties. Loci of the 13 binary properties, grouped into basic dimensions molecular bonds, cyclization, and functional groups. Colors in figures serve to distinguish zones, which coded for a specific combination of several binary properties as determined by mentioned statistical analysis. Numbers in the legends are explained in this caption. (A) Example map showing loci coding for alkane property. 1 marks the coding zone for alkane. (B) Represents molecular bond properties. The numbers stand for: 1 alkane 2 alkene 3 alkane, alkene 4 alkyne 5 alkane, alkyne 6 alkene, alkyne 7 alkane, alkene, alkyne. (C) Shows two cyclization properties. The number code is as follows: 1 aromatic 2 alicyclic 3 aromatic and alicyclic. (D) Marks areas for two cyclization properties. The number code is as follows: 1 polycyclic 2 heterocyclic 3 polycyclic and heterocyclic. (E) Shows coding zones for three functional group properties. The numbers stand for: 1 amine 2 ketone 3 amine and ketone 4 alcohol–phenol 5 amine and alcohol–phenol 6 ketone and alcohol–phenol. (F) Indicates loci for the other 3 functional group properties. The numbers: 1 ester + lactone 2 carboxylic acid 3 ester + lactone and carboxylic acid 4 sulfur-containing compound 5 ester + lactone and sulfur-containing compound 6 carboxylic acid and sulfur-containing compound 7 ester + lactone, carboxylic acid and sulfur-containing compound. Compare to Table 1 where estimations of coding zone size are listed.
Sizes of coding zones.
| Property | Size of zone | Relative size (%) |
|---|---|---|
| Aromatic | 1070 | 58 |
| Alkane | 717 | 39 |
| Carboxylic acid | 646 | 35 |
| Ketone | 459 | 25 |
| Alkene | 424 | 23 |
| Alicyclic | 399 | 22 |
| Heterocyclic | 315 | 17 |
| Ester + lactone | 296 | 16 |
| Alkyne | 254 | 14 |
| Alcohol + phenol | 204 | 11 |
| Polycyclic | 125 | 7 |
| Sulfur-containing compound | 76 | 4 |
| Amine | 10 | 0.5 |
The table shows for each property the number of points found to be significantly correlated at 5% significance level. The second column gives the absolute size in pixels and the third the size relative to all available pixels.
Figure 3Localization of molecular properties. In (A) you see the molecular length across the OB. See the legend for the color code. (B) Shows carbon numbers. The legend explains the color code.
Classification performance of odorant properties.
| Property | Max. performance |
|---|---|
| Sulfur-containing compound | 0.99 |
| Alkyne | 0.99 |
| Alkane | 0.99 |
| Alkene | 0.99 |
| Amine | 0.99 |
| Carboxylic acid | 0.93 |
| Aromatic | 0.86 |
| Ketone | 0.78 |
| Polycyclic | 0.76 |
| Ester + lactone | 0.75 |
| Alcohol + phenol | 0.73 |
| Heterocyclic | 0.73 |
| Alicyclic | 0.72 |
The second column shows the maximum classification performance (in AUC) that was achieved in baseline or representative conditions (whichever was best).