Literature DB >> 21808745

On network derivation, classification, and visualization: a response to Habeck and Moeller.

Erik B Erhardt1, Elena A Allen, Eswar Damaraju, Vince D Calhoun.   

Abstract

In the decade and a half since Biswal's fortuitous discovery of spontaneous correlations in functional imaging data, the field of functional connectivity (FC) has seen exponential growth resulting in the identification of widely-replicated intrinsic networks and the innovation of novel analytic methods with the promise of diagnostic application. As such a young field undergoing rapid change, we have yet to converge upon a desired and needed set of standards. In this issue, Habeck and Moeller begin a dialogue for developing best practices by providing four criticisms with respect to FC estimation methods, interpretation of FC networks, assessment of FC network features in classifying sub-populations, and network visualization. Here, we respond to Habeck and Moeller and provide our own perspective on the concerns raised in the hope that the neuroimaging field will benefit from this discussion.

Entities:  

Year:  2011        PMID: 21808745      PMCID: PMC3146759     

Source DB:  PubMed          Journal:  Brain Connect        ISSN: 2158-0014


  18 in total

Review 1.  A primer on common statistical errors in clinical ophthalmology.

Authors:  Karen Holopigian; Michael Bach
Journal:  Doc Ophthalmol       Date:  2010-10-23       Impact factor: 2.379

2.  The human brain is intrinsically organized into dynamic, anticorrelated functional networks.

Authors:  Michael D Fox; Abraham Z Snyder; Justin L Vincent; Maurizio Corbetta; David C Van Essen; Marcus E Raichle
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-23       Impact factor: 11.205

3.  Simulated driving and brain imaging: combining behavior, brain activity, and virtual reality.

Authors:  Kara N Carvalho; Godfrey D Pearlson; Robert S Astur; Vince D Calhoun
Journal:  CNS Spectr       Date:  2006-01       Impact factor: 3.790

4.  Correspondence of the brain's functional architecture during activation and rest.

Authors:  Stephen M Smith; Peter T Fox; Karla L Miller; David C Glahn; P Mickle Fox; Clare E Mackay; Nicola Filippini; Kate E Watkins; Roberto Toro; Angela R Laird; Christian F Beckmann
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-20       Impact factor: 11.205

5.  Toward discovery science of human brain function.

Authors:  Bharat B Biswal; Maarten Mennes; Xi-Nian Zuo; Suril Gohel; Clare Kelly; Steve M Smith; Christian F Beckmann; Jonathan S Adelstein; Randy L Buckner; Stan Colcombe; Anne-Marie Dogonowski; Monique Ernst; Damien Fair; Michelle Hampson; Matthew J Hoptman; James S Hyde; Vesa J Kiviniemi; Rolf Kötter; Shi-Jiang Li; Ching-Po Lin; Mark J Lowe; Clare Mackay; David J Madden; Kristoffer H Madsen; Daniel S Margulies; Helen S Mayberg; Katie McMahon; Christopher S Monk; Stewart H Mostofsky; Bonnie J Nagel; James J Pekar; Scott J Peltier; Steven E Petersen; Valentin Riedl; Serge A R B Rombouts; Bart Rypma; Bradley L Schlaggar; Sein Schmidt; Rachael D Seidler; Greg J Siegle; Christian Sorg; Gao-Jun Teng; Juha Veijola; Arno Villringer; Martin Walter; Lihong Wang; Xu-Chu Weng; Susan Whitfield-Gabrieli; Peter Williamson; Christian Windischberger; Yu-Feng Zang; Hong-Ying Zhang; F Xavier Castellanos; Michael P Milham
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

6.  Default-mode network activity distinguishes Alzheimer's disease from healthy aging: evidence from functional MRI.

Authors:  Michael D Greicius; Gaurav Srivastava; Allan L Reiss; Vinod Menon
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-15       Impact factor: 11.205

7.  Prediction of human errors by maladaptive changes in event-related brain networks.

Authors:  Tom Eichele; Stefan Debener; Vince D Calhoun; Karsten Specht; Andreas K Engel; Kenneth Hugdahl; D Yves von Cramon; Markus Ullsperger
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-21       Impact factor: 11.205

8.  Reliable intrinsic connectivity networks: test-retest evaluation using ICA and dual regression approach.

Authors:  Xi-Nian Zuo; Clare Kelly; Jonathan S Adelstein; Donald F Klein; F Xavier Castellanos; Michael P Milham
Journal:  Neuroimage       Date:  2009-11-05       Impact factor: 6.556

9.  A baseline for the multivariate comparison of resting-state networks.

Authors:  Elena A Allen; Erik B Erhardt; Eswar Damaraju; William Gruner; Judith M Segall; Rogers F Silva; Martin Havlicek; Srinivas Rachakonda; Jill Fries; Ravi Kalyanam; Andrew M Michael; Arvind Caprihan; Jessica A Turner; Tom Eichele; Steven Adelsheim; Angela D Bryan; Juan Bustillo; Vincent P Clark; Sarah W Feldstein Ewing; Francesca Filbey; Corey C Ford; Kent Hutchison; Rex E Jung; Kent A Kiehl; Piyadasa Kodituwakku; Yuko M Komesu; Andrew R Mayer; Godfrey D Pearlson; John P Phillips; Joseph R Sadek; Michael Stevens; Ursina Teuscher; Robert J Thoma; Vince D Calhoun
Journal:  Front Syst Neurosci       Date:  2011-02-04

10.  Temporal lobe and "default" hemodynamic brain modes discriminate between schizophrenia and bipolar disorder.

Authors:  Vince D Calhoun; Paul K Maciejewski; Godfrey D Pearlson; Kent A Kiehl
Journal:  Hum Brain Mapp       Date:  2008-11       Impact factor: 5.038

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  24 in total

1.  Speech networks at rest and in action: interactions between functional brain networks controlling speech production.

Authors:  Kristina Simonyan; Stefan Fuertinger
Journal:  J Neurophysiol       Date:  2015-02-11       Impact factor: 2.714

2.  Extracting intrinsic functional networks with feature-based group independent component analysis.

Authors:  Vince D Calhoun; Elena Allen
Journal:  Psychometrika       Date:  2012-10-02       Impact factor: 2.500

3.  Analysis of brain subnetworks within the context of their whole-brain networks.

Authors:  Mohsen Bahrami; Paul J Laurienti; Sean L Simpson
Journal:  Hum Brain Mapp       Date:  2019-08-22       Impact factor: 5.038

4.  Changes in intrinsic connectivity of the brain's reading network following intervention in children with autism.

Authors:  Donna L Murdaugh; Jose O Maximo; Rajesh K Kana
Journal:  Hum Brain Mapp       Date:  2015-06-09       Impact factor: 5.038

5.  Functional connectivity associated with gait velocity during walking and walking-while-talking in aging: a resting-state fMRI study.

Authors:  Jennifer Yuan; Helena M Blumen; Joe Verghese; Roee Holtzer
Journal:  Hum Brain Mapp       Date:  2014-12-11       Impact factor: 5.038

6.  In search of multimodal neuroimaging biomarkers of cognitive deficits in schizophrenia.

Authors:  Jing Sui; Godfrey D Pearlson; Yuhui Du; Qingbao Yu; Thomas R Jones; Jiayu Chen; Tianzi Jiang; Juan Bustillo; Vince D Calhoun
Journal:  Biol Psychiatry       Date:  2015-02-24       Impact factor: 13.382

7.  Functional connectivity of the hippocampus in temporal lobe epilepsy: feasibility of a task-regressed seed-based approach.

Authors:  Nuri Erkut Kucukboyaci; Nobuko Kemmotsu; Chris E Cheng; Holly M Girard; Evelyn S Tecoma; Vicente J Iragui; Carrie R McDonald
Journal:  Brain Connect       Date:  2013

8.  Brain connectivity: an opening window into addiction.

Authors:  Vince D Calhoun
Journal:  Am J Drug Alcohol Abuse       Date:  2013-11       Impact factor: 3.829

Review 9.  Brain connectivity networks in schizophrenia underlying resting state functional magnetic resonance imaging.

Authors:  Qingbao Yu; Elena A Allen; Jing Sui; Mohammad R Arbabshirani; Godfrey Pearlson; Vince D Calhoun
Journal:  Curr Top Med Chem       Date:  2012       Impact factor: 3.295

10.  Lateralization of resting state networks and relationship to age and gender.

Authors:  O Agcaoglu; R Miller; A R Mayer; K Hugdahl; V D Calhoun
Journal:  Neuroimage       Date:  2014-09-18       Impact factor: 6.556

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