Literature DB >> 21807498

High throughput platforms for structural genomics of integral membrane proteins.

Filippo Mancia1, James Love.   

Abstract

Structural genomics approaches on integral membrane proteins have been postulated for over a decade, yet specific efforts are lagging years behind their soluble counterparts. Indeed, high throughput methodologies for production and characterization of prokaryotic integral membrane proteins are only now emerging, while large-scale efforts for eukaryotic ones are still in their infancy. Presented here is a review of recent literature on actively ongoing structural genomics of membrane protein initiatives, with a focus on those aimed at implementing interesting techniques aimed at increasing our rate of success for this class of macromolecules.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21807498      PMCID: PMC3172710          DOI: 10.1016/j.sbi.2011.07.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  60 in total

1.  GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes.

Authors:  A J Walhout; G F Temple; M A Brasch; J L Hartley; M A Lorson; S van den Heuvel; M Vidal
Journal:  Methods Enzymol       Date:  2000       Impact factor: 1.600

2.  Ligation-independent cloning of PCR products (LIC-PCR).

Authors:  C Aslanidis; P J de Jong
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

Review 3.  Chapter 2. Development of key technologies for high-throughput cell-free protein production with the extract from wheat embryos.

Authors:  Kazuyuki Takai; Tatsuya Sawasaki; Yaeta Endo
Journal:  Adv Protein Chem Struct Biol       Date:  2009-02-26       Impact factor: 3.507

4.  Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelerate structural genomics efforts.

Authors:  Heath E Klock; Eric J Koesema; Mark W Knuth; Scott A Lesley
Journal:  Proteins       Date:  2008-05-01

5.  A high-throughput assay of membrane protein stability.

Authors:  Vincent L G Postis; Sarah E Deacon; Peter C J Roach; Gareth S A Wright; Xiaobing Xia; Jean C Ingram; Jonathan M Hadden; Peter J F Henderson; Simon E V Phillips; Michael J McPherson; Stephen A Baldwin
Journal:  Mol Membr Biol       Date:  2008-12       Impact factor: 2.857

6.  The E. coli BtuCD structure: a framework for ABC transporter architecture and mechanism.

Authors:  Kaspar P Locher; Allen T Lee; Douglas C Rees
Journal:  Science       Date:  2002-05-10       Impact factor: 47.728

7.  An efficient strategy for high-throughput expression screening of recombinant integral membrane proteins.

Authors:  Said Eshaghi; Marie Hedrén; Marina Ignatushchenko Abdel Nasser; Tove Hammarberg; Anders Thornell; Pär Nordlund
Journal:  Protein Sci       Date:  2005-02-02       Impact factor: 6.725

8.  Structure and mechanism of a pentameric formate channel.

Authors:  Andrew B Waight; James Love; Da-Neng Wang
Journal:  Nat Struct Mol Biol       Date:  2009-12-13       Impact factor: 15.369

9.  Purification of transmembrane proteins from Saccharomyces cerevisiae for X-ray crystallography.

Authors:  Kathleen M Clark; Nadia Fedoriw; Katrina Robinson; Sara M Connelly; Joan Randles; Michael G Malkowski; George T DeTitta; Mark E Dumont
Journal:  Protein Expr Purif       Date:  2010-01-04       Impact factor: 1.650

10.  Selecting optimum eukaryotic integral membrane proteins for structure determination by rapid expression and solubilization screening.

Authors:  Min Li; Franklin A Hays; Zygy Roe-Zurz; Linda Vuong; Libusha Kelly; Chi-Min Ho; Renée M Robbins; Ursula Pieper; Joseph D O'Connell; Larry J W Miercke; Kathleen M Giacomini; Andrej Sali; Robert M Stroud
Journal:  J Mol Biol       Date:  2008-11-24       Impact factor: 5.469

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  11 in total

Review 1.  X-ray crystallography over the past decade for novel drug discovery - where are we heading next?

Authors:  Heping Zheng; Katarzyna B Handing; Matthew D Zimmerman; Ivan G Shabalin; Steven C Almo; Wladek Minor
Journal:  Expert Opin Drug Discov       Date:  2015-07-15       Impact factor: 6.098

Review 2.  Highlights from recently determined structures of membrane proteins: a focus on channels and transporters.

Authors:  Giuliano Sciara; Filippo Mancia
Journal:  Curr Opin Struct Biol       Date:  2012-04-01       Impact factor: 6.809

Review 3.  Structural genomics plucks high-hanging membrane proteins.

Authors:  Edda Kloppmann; Marco Punta; Burkhard Rost
Journal:  Curr Opin Struct Biol       Date:  2012-05-21       Impact factor: 6.809

4.  Structural basis of lipopolysaccharide maturation by the O-antigen ligase.

Authors:  Owen N Vickery; Satchal K Erramilli; Carmen M Herrera; Thomas H McConville; Khuram U Ashraf; Rie Nygaard; Vasileios I Petrou; Sabrina I Giacometti; Meagan Belcher Dufrisne; Kamil Nosol; Allen P Zinkle; Chris L B Graham; Michael Loukeris; Brian Kloss; Karolina Skorupinska-Tudek; Ewa Swiezewska; David I Roper; Oliver B Clarke; Anne-Catrin Uhlemann; Anthony A Kossiakoff; M Stephen Trent; Phillip J Stansfeld; Filippo Mancia
Journal:  Nature       Date:  2022-04-06       Impact factor: 69.504

5.  Structural basis for catalysis in a CDP-alcohol phosphotransferase.

Authors:  Giuliano Sciara; Oliver B Clarke; David Tomasek; Brian Kloss; Shantelle Tabuso; Rushelle Byfield; Raphael Cohn; Surajit Banerjee; Kanagalaghatta R Rajashankar; Vesna Slavkovic; Joseph H Graziano; Lawrence Shapiro; Filippo Mancia
Journal:  Nat Commun       Date:  2014-06-13       Impact factor: 14.919

6.  Quality control in eukaryotic membrane protein overproduction.

Authors:  Jennifer A Thomas; Christopher G Tate
Journal:  J Mol Biol       Date:  2014-12-12       Impact factor: 5.469

7.  Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB and insights into the mechanism of catalysis.

Authors:  Chiara Ardiccioni; Oliver B Clarke; David Tomasek; Habon A Issa; Desiree C von Alpen; Heather L Pond; Surajit Banerjee; Kanagalaghatta R Rajashankar; Qun Liu; Ziqiang Guan; Chijun Li; Brian Kloss; Renato Bruni; Edda Kloppmann; Burkhard Rost; M Chiara Manzini; Lawrence Shapiro; Filippo Mancia
Journal:  Nat Commun       Date:  2016-01-05       Impact factor: 14.919

8.  A mutagenesis and screening strategy to generate optimally thermostabilized membrane proteins for structural studies.

Authors:  Francesca Magnani; Maria J Serrano-Vega; Yoko Shibata; Saba Abdul-Hussein; Guillaume Lebon; Jennifer Miller-Gallacher; Ankita Singhal; Annette Strege; Jennifer A Thomas; Christopher G Tate
Journal:  Nat Protoc       Date:  2016-07-28       Impact factor: 13.491

Review 9.  Overexpression of membrane proteins in mammalian cells for structural studies.

Authors:  Juni Andréll; Christopher G Tate
Journal:  Mol Membr Biol       Date:  2012-09-11       Impact factor: 2.857

10.  An efficient strategy for small-scale screening and production of archaeal membrane transport proteins in Escherichia coli.

Authors:  Pikyee Ma; Filipa Varela; Malgorzata Magoch; Ana Rita Silva; Ana Lúcia Rosário; José Brito; Tânia Filipa Oliveira; Przemyslaw Nogly; Miguel Pessanha; Meike Stelter; Arnulf Kletzin; Peter J F Henderson; Margarida Archer
Journal:  PLoS One       Date:  2013-10-07       Impact factor: 3.240

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