Literature DB >> 21803972

RNase P: at last, the key finds its lock.

Benoît Masquida1, Eric Westhof.   

Abstract

Apart from the ribosome, the crystal structure of the bacterial RNase P in complex with a tRNA, reported by Reiter and colleagues recently, constitutes the first example of a multiple turnover RNA enzyme. Except in rare exceptions, RNase P is ubiquitous and, like the ribosome, is older than the initial branch point of the phylogenetic tree. Importantly, the structure shows how the RNA and the protein moieties cooperate to process the pre-tRNA substrates. The catalytic site comprises some critical RNA residues spread over the secondary structure but gathered in a compact volume next to the protein, which helps recognize and orient the substrate. The discussion here outlines some important aspects of that crystal structure, some of which could apply to RNA molecules in general.

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Year:  2011        PMID: 21803972      PMCID: PMC3162327          DOI: 10.1261/rna.2841511

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  22 in total

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Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
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Review 2.  Interactions of the ribosome with mRNA and tRNA.

Authors:  Natalia Demeshkina; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
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3.  Use of RNA tertiary interaction modules for the crystallisation of the spliceosomal snRNP core domain.

Authors:  Adelaine K W Leung; Christian Kambach; Yasushi Kondo; Martin Kampmann; Martin Jinek; Kiyoshi Nagai
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Review 4.  Structure, dynamics, and function of RNA modification enzymes.

Authors:  Ryuichiro Ishitani; Shigeyuki Yokoyama; Osamu Nureki
Journal:  Curr Opin Struct Biol       Date:  2008-06-05       Impact factor: 6.809

5.  RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme.

Authors:  Johann Holzmann; Peter Frank; Esther Löffler; Keiryn L Bennett; Christopher Gerner; Walter Rossmanith
Journal:  Cell       Date:  2008-10-31       Impact factor: 41.582

6.  Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid-base catalysis? A critical assessment of available experimental data.

Authors:  Timothy J Wilson; David M J Lilley
Journal:  RNA       Date:  2010-12-20       Impact factor: 4.942

Review 7.  Use of the spliceosomal protein U1A to facilitate crystallization and structure determination of complex RNAs.

Authors:  Adrian R Ferré-D'Amaré
Journal:  Methods       Date:  2010-06-08       Impact factor: 3.608

8.  Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA.

Authors:  Nicholas J Reiter; Amy Osterman; Alfredo Torres-Larios; Kerren K Swinger; Tao Pan; Alfonso Mondragón
Journal:  Nature       Date:  2010-11-14       Impact factor: 49.962

9.  Structure of the spliceosomal U4 snRNP core domain and its implication for snRNP biogenesis.

Authors:  Adelaine K W Leung; Kiyoshi Nagai; Jade Li
Journal:  Nature       Date:  2011-04-24       Impact factor: 49.962

10.  Molecular modelling of the GIR1 branching ribozyme gives new insight into evolution of structurally related ribozymes.

Authors:  Bertrand Beckert; Henrik Nielsen; Christer Einvik; Steinar D Johansen; Eric Westhof; Benoît Masquida
Journal:  EMBO J       Date:  2008-01-24       Impact factor: 11.598

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4.  Geneticin Stabilizes the Open Conformation of the 5' Region of Hepatitis C Virus RNA and Inhibits Viral Replication.

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Journal:  Antimicrob Agents Chemother       Date:  2015-11-30       Impact factor: 5.191

5.  A screening platform to monitor RNA processing and protein-RNA interactions in ribonuclease P uncovers a small molecule inhibitor.

Authors:  Ezequiel-Alejandro Madrigal-Carrillo; Carlos-Alejandro Díaz-Tufinio; Hugo-Aníbal Santamaría-Suárez; Marcelino Arciniega; Alfredo Torres-Larios
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  5 in total

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