| Literature DB >> 21801377 |
Apaporn Boonmee1, Chantragan Srisomsap, Daranee Chokchaichamnankit, Aphichart Karnchanatat, Polkit Sangvanich.
Abstract
BACKGROUND: The similarly in plant physiology and the difficulty of plant classification, in some medicinal plant species, especially plants of the Zingiberaceae family, are a major problem for pharmacologists, leading to mistaken use. To overcome this problem, the proteomic base method was used to study protein profiles of the plant model, Curcuma comosa Roxb., which is a member of the Zingiberaceae and has been used in traditional Thai medicine as an anti-inflammatory agent for the treatment of postpartum uterine bleeding.Entities:
Year: 2011 PMID: 21801377 PMCID: PMC3199743 DOI: 10.1186/1477-5956-9-43
Source DB: PubMed Journal: Proteome Sci ISSN: 1477-5956 Impact factor: 2.480
Figure 1Two-dimensional (IEF-SDS-PAGE) gel electrophoresis profile of the crude phenol-soluble protein fraction isolated from . Protein molecular weight markers were co-resolved in the second (SDS-PAGE) dimension on the right hand side, with the sizes indicated in the figure. The gels shown are representative of three such repeats.
Figure 2Two-dimensional (IEF-SDS-PAGE) gel electrophoresis profiles of the crude phenol-soluble protein fraction isolated from . The two enriched samples were then resolved in the first dimension using a linear IEF strip of (A) pH 3.9-5.1 and (B) pH 3-10. Protein molecular weight markers were co-resolved in the second (SDS-PAGE) dimension on the right hand side, with the sizes indicated in the figure. The gels shown are representative of three such repeats.
Phenol-soluble proteins identified from 2-D (IEF-SDS-PAGE) gels of the acidic (pH 3-5.4; spot nos. A2- 40 in figure 2) and basic (pH 5.4-10; spot nos. B4-37 in figure 2) region proteins from C. comosa rhizomes, as analyzed by LC/MS/MS.
| Spot | Uniport ID | Protein name | Organism | Sequence coverage (%) | Peptides matched | Theoretical | Function | |
|---|---|---|---|---|---|---|---|---|
| MW (Da) | pI | |||||||
| A2 | Q40687 | Guanine nucleotide-binding protein subunit beta | 3 | 1 | 41,726 | 7.13 | Protein signaling | |
| A3 | Q9FNA6 | Genomic DNA, chromosome 5, P1 clone | 6 | 1 | 60,231 | 5.56 | Unknown | |
| A5 | P32033 | Protein ycf2 | 7 | 1 | 234,393 | 9.25 | ATP binding | |
| A8 | O64637 | Cytochrome P450 76C2 | 3 | 2 | 57,221 | 6.50 | Oxidoreductase | |
| A7 | Q9MAZ0 | Nonclathrin coat protein | 6 | 1 | 19,928 | 4.81 | Protein transport | |
| A9 | P30182 | DNA topoisomerase 2 | 2 | 2 | 164,005 | 7.25 | ATP binding | |
| A11 | Q6ZBQ5 | Hypothetical protein | 7 | 1 | 15,105 | 11.6 | Unknown | |
| A12 | Q9ZPH2 | Monothiol glutaredoxin-S17 | 3 | 1 | 53,082 | 5.01 | Electron carrier | |
| A13 | P27898 | Myb-related protein P | 2 | 1 | 43,729 | 10.1 | Transcription | |
| A16 | A9SAC0 | Predicted protein | Physcomitrella patens subsp patens | 4 | 1 | 17,421. | 5.28 | Unknown |
| A17 | Q9LDQ8 | Similarity to proton pump interactor | 1 | 1 | 58,552 | 5.66 | Unknown | |
| A18 | Q2QM00 | Type IIB DNA topoisomerase family protein | 1 | 1 | 55,342 | 5.62 | DNA/ATP binding | |
| A19 | Q9LVP9 | Vesicle transport v-SNARE 13 | 4 | 1 | 25,026 | 9.41 | Protein transport | |
| A20 | Q5I2R0 | minus agglutinin (SAD1) | 1 | 2 | 404,525 | 6.08 | Defense | |
| A25 | Q9GEZ3 | NADH dehydrogenase subunit F | 2 | 1 | 37,892 | 9.74 | Oxidoreductase | |
| A27 | Q6V8L5 | Lectin | 12 | 4 | 20,250 | 9.17 | Defense | |
| A31 | Q6RHR1 | Basic beta-1,3-glucanase | 6 | 1 | 17,521 | 11.3 | Metabolism | |
| A28 | O49565 | Putative F-box protein At4g21240 | 2 | 1 | 48,377 | 5.83 | Unknown | |
| A34 | Q41625 | Mannose-binding lectin precursor | 13 | 4 | 19,556 | 5.60 | Defense | |
| A40 | Q0ZIZ4 | ATP-dependent Clp protease proteolytic subunit | 5 | 1 | 22,060 | 4.75 | Proteolysis | |
| B4 | P93262 | Phosphoglucomutase | 2 | 1 | 63,446 | 5.87 | Metabolism | |
| B5 | Q94CI8 | Glycine-rich protein | 2 | 1 | 23,420 | 5.88 | Unknown | |
| B6 | Q1PCD2 | glucose 6 phosphate isomerase | 5 | 2 | 62,739 | 6.56 | Metabolism | |
| B7 | Q8LKB0 | enolase | 21 | 2 | 15,864 | 7.83 | Metabolism | |
| B8 | Q06H19 | UDP glucose pyrophosphorylase | 22 | 3 | 16,851 | 7.30 | Metabolism | |
| B9 | Q8S9B8 | UGPase PC | 3 | 1 | 50,719 | 5.90 | Metabolism | |
| B10 | B2X0E6 | glyceraldehyde 3 phosphate dehydrogenase | 47 | 2 | 32,795 | 5.96 | Metabolism | |
| B11 | Q5PY03 | glyceraldehyde 3 phosphate dehydrogenase | 2 | 1 | 35,974 | 6.20 | Metabolism | |
| B12 | Q2XQF4 | glyceraldehyde 3 phosphate dehydrogenase | 8 | 2 | 32,135 | 7.42 | Metabolism | |
| B13 | P34922 | glyceraldehyde 3 phosphate dehydrogenase | 9 | 3 | 36,586 | 6.63 | Metabolism | |
| B14 | A5JEJ7 | glyceraldehyde 3 phosphate dehydrogenase | 13 | 1 | 7,001 | 9.87 | Metabolism | |
| B15 | P84733 | Putative cytochrome c oxidase subunit II PS17 | 50 | 1 | 33,265 | 7.42 | Unknown | |
| B16 | O82450 | branched chain alpha keto acid decarboxylase | 2 | 1 | 38,709 | 6.27 | Oxidoreductase | |
| B17 | Q5ILG5 | cysteine protease gp3a | 4 | 4 | 52,062 | 6.17 | Peptidase | |
| B18 | Q01H20 | Predicted ATPase (ISS) | 1 | 1 | 57,490 | 5.84 | ATP binding | |
| B19 | P25251 | cysteine protease COT44 | 4 | 1 | 36,277 | 8.05 | Peptidase | |
| B21 | Q9FE01 | L-ascorbate peroxidase 2 | 15 | 3 | 27,101 | 5.21 | Stress/Defense | |
| B23 | Q41561 | Heat shock protein 16.9C | 16 | 2 | 14,376 | 6.23 | Stress | |
| B24 | O22373 | Superoxide dismutase [Cu-Zn] | 10 | 2 | 15,279 | 5.13 | Stress/Defense | |
| B33 | Q8LEA2 | Gibberellin 2-beta-dioxygenase 1 | 7 | 2 | 36,709 | 8.53 | Oxidoreductase | |
| B34 | Q94A43 | BES1/BZR1 homolog protein 2 | 8 | 1 | 34,174 | 8.63 | Transcription | |
| B37 | Q09023 | Endochitinase CH25 precursor | 8 | 1 | 34,793 | 6.29 | Metabolism | |
Figure 3Functional distribution of the 42 putatively identified phenol-soluble proteins (see Table 1) expressed in . Protein functions are ascribed from that which was annotated in the database to the likely hit (homolog) found by peptide mapping of the tryptic fragments.