Literature DB >> 21800913

Characterization of the human tear metabolome by LC-MS/MS.

Liyan Chen1, Lei Zhou, Eric C Y Chan, Jason Neo, Roger W Beuerman.   

Abstract

The tear film overlying the epithelial cells of the eye's surface is vital to visual function, and its composition is reflective of ocular surface health. The ultrasmall volume of tears poses challenges in its analysis, contributing to the limited number of reports on the tear metabolome. In addition, using a standard clinical method of tear collection posed some confounding factors in metabonomic analysis. We sought to establish an analytical platform for the global characterization of human tear metabolites. Following information dependent acquisition (IDA) directed liquid chromatography-tandem mass spectrometry (LC-MS/MS), isotope pattern matched peak mining was performed using Extracted Ion Chromatogram (XIC) manager within the PeakView software. Sixty metabolites representing diverse compound classes were identified in human tears, most of which have not been previously reported. Selected metabolites were verified using pure standards. Unsupervised chemometric analysis showed good separation between tear samples and blanks (PC1 = 87%, R(2) = 0.91, Q(2) = 0.87). The results demonstrated the potential of our platform for untargeted metabonomic studies of eye diseases.

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Year:  2011        PMID: 21800913     DOI: 10.1021/pr2004874

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  35 in total

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Authors:  Scott Grieshaber; Nicole Grieshaber; Hong Yang; Briana Baxter; Ted Hackstadt; Anders Omsland
Journal:  J Bacteriol       Date:  2018-06-25       Impact factor: 3.490

2.  Extensive characterization of human tear fluid collected using different techniques unravels the presence of novel lipid amphiphiles.

Authors:  Sin Man Lam; Louis Tong; Xinrui Duan; Andrea Petznick; Markus R Wenk; Guanghou Shui
Journal:  J Lipid Res       Date:  2013-11-28       Impact factor: 5.922

3.  Metabolomics technology and bioinformatics for precision medicine.

Authors:  Rajeev K Azad; Vladimir Shulaev
Journal:  Brief Bioinform       Date:  2019-11-27       Impact factor: 11.622

Review 4.  TFOS DEWS II Tear Film Report.

Authors:  Mark D P Willcox; Pablo Argüeso; Georgi A Georgiev; Juha M Holopainen; Gordon W Laurie; Tom J Millar; Eric B Papas; Jannick P Rolland; Tannin A Schmidt; Ulrike Stahl; Tatiana Suarez; Lakshman N Subbaraman; Omür Ö Uçakhan; Lyndon Jones
Journal:  Ocul Surf       Date:  2017-07-20       Impact factor: 5.033

5.  A cleavage-potentiated fragment of tear lacritin is bactericidal.

Authors:  Robert L McKown; Erin V Coleman Frazier; Kaneil K Zadrozny; Andrea M Deleault; Ronald W Raab; Denise S Ryan; Rose K Sia; Jae K Lee; Gordon W Laurie
Journal:  J Biol Chem       Date:  2014-06-18       Impact factor: 5.157

Review 6.  Introduction to metabolomics and its applications in ophthalmology.

Authors:  S Z Tan; P Begley; G Mullard; K A Hollywood; P N Bishop
Journal:  Eye (Lond)       Date:  2016-03-18       Impact factor: 3.775

Review 7.  Metabolomics in diabetic complications.

Authors:  Laura A Filla; James L Edwards
Journal:  Mol Biosyst       Date:  2016-02-19

8.  Quantitative mass spectrometry of unconventional human biological matrices.

Authors:  Ewelina P Dutkiewicz; Pawel L Urban
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2016-10-28       Impact factor: 4.226

9.  LC-MS/MS-Based Metabolome Analysis of Biochemical Pathways Altered by Food Limitation in Larvae of Ivory Shell, Babylonia areolata.

Authors:  Jingqiang Fu; Minghui Shen; Yawei Shen; Wengang Lü; Miaoqin Huang; Xuan Luo; Jinjin Yu; Caihuan Ke; Weiwei You
Journal:  Mar Biotechnol (NY)       Date:  2018-04-20       Impact factor: 3.619

10.  Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database.

Authors:  Zheng-Jiang Zhu; Andrew W Schultz; Junhua Wang; Caroline H Johnson; Steven M Yannone; Gary J Patti; Gary Siuzdak
Journal:  Nat Protoc       Date:  2013-02-07       Impact factor: 13.491

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