Literature DB >> 21788335

Defining the Mer1 and Nam8 meiotic splicing regulons by cDNA rescue.

Zhicheng R Qiu1, Beate Schwer, Stewart Shuman.   

Abstract

Meiosis-specific pre-mRNA splicing in budding yeast embraces multiple pre-mRNA targets grouped into regulons defined by their genetic requirements for vegetatively optional splicing factors (e.g., splicing enhancer Mer1 and the U1 snRNP subunit Nam8) or snRNA modifications (trimethylguanosine caps). Here, we genetically demarcate a complete meiotic splicing regulon by the criterion of cDNA bypass of the requirement for the governing splicing regulators to execute sporulation. We thereby show that the Mer1 and Nam8 regulons embrace four essential pre-mRNAs: MER2, MER3, SPO22, and AMA1. Whereas Nam8 also regulates PCH2 splicing, PCH2 cDNA is not needed for sporulation by nam8Δ diploids. Our results show that there are no essential intron-containing RNAs missing from the known roster of Mer1 and Nam8 targets. Nam8 is composed of three RRM domains, flanked by N-terminal leader and C-terminal tail segments. We find that the RRM2 and RRM3 domains, and their putative RNA-binding sites, are essential for yeast sporulation, whereas the leader, tail, and RRM1 modules are not.

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Year:  2011        PMID: 21788335      PMCID: PMC3162330          DOI: 10.1261/rna.2792011

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  25 in total

1.  The core meiotic transcriptome in budding yeasts.

Authors:  M Primig; R M Williams; E A Winzeler; G G Tevzadze; A R Conway; S Y Hwang; R W Davis; R E Esposito
Journal:  Nat Genet       Date:  2000-12       Impact factor: 38.330

2.  Integration of a splicing regulatory network within the meiotic gene expression program of Saccharomyces cerevisiae.

Authors:  Elizabeth M Munding; A Haller Igel; Lily Shiue; Kristel M Dorighi; Lisa R Treviño; Manuel Ares
Journal:  Genes Dev       Date:  2010-12-01       Impact factor: 11.361

3.  High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing.

Authors:  Kara Juneau; Curtis Palm; Molly Miranda; Ronald W Davis
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-23       Impact factor: 11.205

Review 4.  Expansion of the eukaryotic proteome by alternative splicing.

Authors:  Timothy W Nilsen; Brenton R Graveley
Journal:  Nature       Date:  2010-01-28       Impact factor: 49.962

5.  A yeast intronic splicing enhancer and Nam8p are required for Mer1p-activated splicing.

Authors:  M Spingola; M Ares
Journal:  Mol Cell       Date:  2000-08       Impact factor: 17.970

6.  Ama1p is a meiosis-specific regulator of the anaphase promoting complex/cyclosome in yeast.

Authors:  K F Cooper; M J Mallory; D B Egeland; M Jarnik; R Strich
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

7.  The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome.

Authors:  Patrizia Fabrizio; Julia Dannenberg; Prakash Dube; Berthold Kastner; Holger Stark; Henning Urlaub; Reinhard Lührmann
Journal:  Mol Cell       Date:  2009-11-25       Impact factor: 17.970

8.  Interactions between Mei4, Rec114, and other proteins required for meiotic DNA double-strand break formation in Saccharomyces cerevisiae.

Authors:  Shohreh Maleki; Matthew J Neale; Charanjit Arora; Kiersten A Henderson; Scott Keeney
Journal:  Chromosoma       Date:  2007-06-09       Impact factor: 4.316

9.  Determinants of Nam8-dependent splicing of meiotic pre-mRNAs.

Authors:  Zhicheng R Qiu; Beate Schwer; Stewart Shuman
Journal:  Nucleic Acids Res       Date:  2011-01-05       Impact factor: 16.971

10.  An essential role for trimethylguanosine RNA caps in Saccharomyces cerevisiae meiosis and their requirement for splicing of SAE3 and PCH2 meiotic pre-mRNAs.

Authors:  Zhicheng R Qiu; Stewart Shuman; Beate Schwer
Journal:  Nucleic Acids Res       Date:  2011-03-11       Impact factor: 16.971

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  5 in total

1.  A dominant role for meiosis-specific 3' RNA processing in controlling expression of a fission yeast cyclin gene.

Authors:  Kristine Potter; Nicole Cremona; Sham Sunder; Jo Ann Wise
Journal:  RNA       Date:  2012-05-30       Impact factor: 4.942

Review 2.  Regulated pre-mRNA splicing: the ghostwriter of the eukaryotic genome.

Authors:  Tracy L Johnson; Josep Vilardell
Journal:  Biochim Biophys Acta       Date:  2012-01-09

3.  Genetic interactions of hypomorphic mutations in the m7G cap-binding pocket of yeast nuclear cap binding complex: an essential role for Cbc2 in meiosis via splicing of MER3 pre-mRNA.

Authors:  Zhicheng R Qiu; Lidia Chico; Jonathan Chang; Stewart Shuman; Beate Schwer
Journal:  RNA       Date:  2012-09-21       Impact factor: 4.942

4.  Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs.

Authors:  Agata Jacewicz; Lidia Chico; Paul Smith; Beate Schwer; Stewart Shuman
Journal:  RNA       Date:  2015-01-13       Impact factor: 4.942

5.  Deep conservation of prion-like composition in the eukaryotic prion-former Pub1/Tia1 family and its relatives.

Authors:  Wan-Chun Su; Paul M Harrison
Journal:  PeerJ       Date:  2020-04-17       Impact factor: 2.984

  5 in total

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