Literature DB >> 21785935

De novo design of 7-aminocoumarin derivatives as novel falcipain-3 inhibitors.

Anand S Chintakrindi1, Mushtaque S Shaikh, Evans C Coutinho.   

Abstract

The availability of the crystal structure of falcipain-3, knowledge of the peptides carrying the 7-aminocoumarin moiety as falcipain-3 ligands/substrates, and a need for new antimalarial agents stimulated us to look at the possibility of finding some novel falcipain-3 inhibitors. In this paper, we report the effect of substitution at the 7-amino position of the coumarin nucleus on the inhibition of falcipain-3, which is a well-validated antimalarial target. The de novo drug design was assisted by QSAR studies that shed light on the binding patterns of known and the newly designed inhibitors, thus taking this discovery process to the next level.

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Year:  2011        PMID: 21785935     DOI: 10.1007/s00894-011-1177-2

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  20 in total

1.  Probing the structure of falcipain-3, a cysteine protease from Plasmodium falciparum: comparative protein modeling and docking studies.

Authors:  Yogesh A Sabnis; Prashant V Desai; Philip J Rosenthal; Mitchell A Avery
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

2.  POPS: A fast algorithm for solvent accessible surface areas at atomic and residue level.

Authors:  Luigi Cavallo; Jens Kleinjung; Franca Fraternali
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  ZINC--a free database of commercially available compounds for virtual screening.

Authors:  John J Irwin; Brian K Shoichet
Journal:  J Chem Inf Model       Date:  2005 Jan-Feb       Impact factor: 4.956

4.  Identification of novel parasitic cysteine protease inhibitors by use of virtual screening. 2. The available chemical directory.

Authors:  Prashant V Desai; Akshay Patny; Jiri Gut; Philip J Rosenthal; Babu Tekwani; Anuradha Srivastava; Mitchell Avery
Journal:  J Med Chem       Date:  2006-03-09       Impact factor: 7.446

5.  A comprehensive analysis of the thermodynamic events involved in ligand-receptor binding using CoRIA and its variants.

Authors:  Jitender Verma; Vijay M Khedkar; Arati S Prabhu; Santosh A Khedkar; Alpeshkumar K Malde; Evans C Coutinho
Journal:  J Comput Aided Mol Des       Date:  2008-01-25       Impact factor: 3.686

6.  Three-dimensional quantitative structure-activity relationship analyses using comparative molecular field analysis and comparative molecular similarity indices analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa.

Authors:  M Böhm; J St rzebecher; G Klebe
Journal:  J Med Chem       Date:  1999-02-11       Impact factor: 7.446

7.  Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity.

Authors:  G Klebe; U Abraham; T Mietzner
Journal:  J Med Chem       Date:  1994-11-25       Impact factor: 7.446

8.  Identification of novel parasitic cysteine protease inhibitors using virtual screening. 1. The ChemBridge database.

Authors:  Prashant V Desai; Akshay Patny; Yogesh Sabnis; Babu Tekwani; Jiri Gut; Philip Rosenthal; Anuradha Srivastava; Mitchell Avery
Journal:  J Med Chem       Date:  2004-12-16       Impact factor: 7.446

Review 9.  Modes of inhibition of cysteine proteases.

Authors:  Malgorzata Rzychon; Dorota Chmiel; Justyna Stec-Niemczyk
Journal:  Acta Biochim Pol       Date:  2004       Impact factor: 2.149

10.  Design of inhibitors of the MurF enzyme of Streptococcus pneumoniae using docking, 3D-QSAR, and de Novo design.

Authors:  Santosh A Khedkar; Alpeshkumar K Malde; Evans C Coutinho
Journal:  J Chem Inf Model       Date:  2007-07-31       Impact factor: 4.956

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