Literature DB >> 21775447

Artificial recombination may influence the evolutionary analysis of Newcastle disease virus.

Qingqing Song1, Yongzhong Cao, Qun Li, Min Gu, Lei Zhong, Shunlin Hu, Hongquan Wan, Xiufan Liu.   

Abstract

The recombination rate in Newcastle disease virus (NDV) was as high as 10% in RDP analysis with full-length NDV genome sequences available in GenBank. We found that two NDV strains, China/Guangxi09/2003 and NDV/03/018, previously reported as recombinants, failed to show any evidence of recombination upon complete genome resequencing. Furthermore, we were able to reproduce artificial recombination by amplification of the M gene in a mixed sample of strains LaSota and ZJ1. It appears that the recombination of NDV is not as common as has been reported. NDV sequences in GenBank should be analyzed with caution during bioinformatic analyses for natural recombination events.

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Year:  2011        PMID： 21775447      PMCID： PMC3196445          DOI： 10.1128/JVI.00544-11

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  62 in total

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Authors:  Shuang Wu; Weiwei Wang; Chunfeng Yao; Xiaoquan Wang; Shunlin Hu; Junping Cao; Yantao Wu; Wenbo Liu; Xiufan Liu
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2.  Recombination patterns in aphthoviruses mirror those found in other picornaviruses.

Authors:  Livio Heath; Eric van der Walt; Arvind Varsani; Darren P Martin
Journal:  J Virol       Date:  2006-09-13       Impact factor: 5.103

Review 3.  Analyzing the mosaic structure of genes.

Authors:  J M Smith
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4.  Not so fast on recombination analysis of Newcastle disease virus.

Authors:  Claudio L Afonso
Journal:  J Virol       Date:  2008-09       Impact factor: 5.103

5.  Non-homologous recombination mediated by Thermus aquaticus DNA polymerase I. Evidence supporting a copy choice mechanism.

Authors:  P G Zaphiropoulos
Journal:  Nucleic Acids Res       Date:  1998-06-15       Impact factor: 16.971

6.  Complete nucleotide sequence of Newcastle disease virus: evidence for the existence of a new genus within the subfamily Paramyxovirinae.

Authors:  O de Leeuw; B Peeters
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Authors:  C M Fauquet; D Fargette
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  9 in total

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Review 3.  Homologous recombination in negative sense RNA viruses.

Authors:  Guan-Zhu Han; Michael Worobey
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Authors:  Kiril M Dimitrov; Celia Abolnik; Claudio L Afonso; Emmanuel Albina; Justin Bahl; Mikael Berg; Francois-Xavier Briand; Ian H Brown; Kang-Seuk Choi; Ilya Chvala; Diego G Diel; Peter A Durr; Helena L Ferreira; Alice Fusaro; Patricia Gil; Gabriela V Goujgoulova; Christian Grund; Joseph T Hicks; Tony M Joannis; Mia Kim Torchetti; Sergey Kolosov; Bénédicte Lambrecht; Nicola S Lewis; Haijin Liu; Hualei Liu; Sam McCullough; Patti J Miller; Isabella Monne; Claude P Muller; Muhammad Munir; Dilmara Reischak; Mahmoud Sabra; Siba K Samal; Renata Servan de Almeida; Ismaila Shittu; Chantal J Snoeck; David L Suarez; Steven Van Borm; Zhiliang Wang; Frank Y K Wong
Journal:  Infect Genet Evol       Date:  2019-06-11       Impact factor: 3.342

Review 5.  Avian Orthoavulavirus Type-1 as Vaccine Vector against Respiratory Viral Pathogens in Animal and Human.

Authors:  Julianne Vilela; Mohammed A Rohaim; Muhammad Munir
Journal:  Vaccines (Basel)       Date:  2022-02-08

6.  Generation and characterization of a recombinant Newcastle disease virus expressing the red fluorescent protein for use in co-infection studies.

Authors:  Jinnan Li; Haixia Hu; Qingzhong Yu; Diego G Diel; De-shan Li; Patti J Miller
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7.  Isolation and identification of a novel rabies virus lineage in China with natural recombinant nucleoprotein gene.

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8.  Efficient Co-Replication of Defective Novirhabdovirus.

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Journal:  Viruses       Date:  2016-03-04       Impact factor: 5.048

9.  Detection of Inter-Lineage Natural Recombination in Avian Paramyxovirus Serotype 1 Using Simplified Deep Sequencing Platform.

Authors:  Dilan A Satharasinghe; Kavitha Murulitharan; Sheau W Tan; Swee K Yeap; Muhammad Munir; Aini Ideris; Abdul R Omar
Journal:  Front Microbiol       Date:  2016-11-30       Impact factor: 5.640
  9 in total

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