Literature DB >> 21768106

Calcite formation in soft coral sclerites is determined by a single reactive extracellular protein.

M Azizur Rahman1, Tamotsu Oomori, Gert Wörheide.   

Abstract

Calcium carbonate exists in two main forms, calcite and aragonite, in the skeletons of marine organisms. The primary mineralogy of marine carbonates has changed over the history of the earth depending on the magnesium/calcium ratio in seawater during the periods of the so-called "calcite and aragonite seas." Organisms that prefer certain mineralogy appear to flourish when their preferred mineralogy is favored by seawater chemistry. However, this rule is not without exceptions. For example, some octocorals produce calcite despite living in an aragonite sea. Here, we address the unresolved question of how organisms such as soft corals are able to form calcitic skeletal elements in an aragonite sea. We show that an extracellular protein called ECMP-67 isolated from soft coral sclerites induces calcite formation in vitro even when the composition of the calcifying solution favors aragonite precipitation. Structural details of both the surface and the interior of single crystals generated upon interaction with ECMP-67 were analyzed with an apertureless-type near-field IR microscope with high spatial resolution. The results show that this protein is the main determining factor for driving the production of calcite instead of aragonite in the biocalcification process and that -OH, secondary structures (e.g. α-helices and amides), and other necessary chemical groups are distributed over the center of the calcite crystals. Using an atomic force microscope, we also explored how this extracellular protein significantly affects the molecular-scale kinetics of crystal formation. We anticipate that a more thorough investigation of the proteinaceous skeleton content of different calcite-producing marine organisms will reveal similar components that determine the mineralogy of the organisms. These findings have significant implications for future models of the crystal structure of calcite in nature.

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Year:  2011        PMID: 21768106      PMCID: PMC3173117          DOI: 10.1074/jbc.M109.070185

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  18 in total

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4.  Sponge paleogenomics reveals an ancient role for carbonic anhydrase in skeletogenesis.

Authors:  Daniel J Jackson; Luciana Macis; Joachim Reitner; Bernard M Degnan; Gert Wörheide
Journal:  Science       Date:  2007-05-31       Impact factor: 47.728

5.  Proteins of calcified endoskeleton: II partial amino acid sequences of endoskeletal proteins and the characterization of proteinaceous organic matrix of spicules from the alcyonarian, Synularia polydactyla.

Authors:  M Azizur Rahman; Yeishin Isa; Tsuyoshi Uehara
Journal:  Proteomics       Date:  2005-03       Impact factor: 3.984

6.  Direct observation of the transition from calcite to aragonite growth as induced by abalone shell proteins.

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9.  Quantitative IR spectrophotometry of peptide compounds in water (H2O) solutions. I. Spectral parameters of amino acid residue absorption bands.

Authors:  N N Kalnin
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10.  Peptides enhance magnesium signature in calcite: insights into origins of vital effects.

Authors:  A E Stephenson; J J DeYoreo; L Wu; K J Wu; J Hoyer; P M Dove
Journal:  Science       Date:  2008-10-31       Impact factor: 47.728

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  8 in total

1.  Molecular cloning and characterization of first organic matrix protein from sclerites of red coral, Corallium rubrum.

Authors:  Julien Debreuil; Eric Tambutté; Didier Zoccola; Emeline Deleury; Jean-Marie Guigonis; Michel Samson; Denis Allemand; Sylvie Tambutté
Journal:  J Biol Chem       Date:  2012-04-13       Impact factor: 5.157

2.  First evidence of chitin in calcified coralline algae: new insights into the calcification process of Clathromorphum compactum.

Authors:  M Azizur Rahman; Jochen Halfar
Journal:  Sci Rep       Date:  2014-08-22       Impact factor: 4.379

3.  Soft corals form aragonite-precipitated columnar spiculite in mesophotic reefs.

Authors:  Erez Shoham; Thomas Prohaska; Zahava Barkay; Andreas Zitek; Yehuda Benayahu
Journal:  Sci Rep       Date:  2019-02-04       Impact factor: 4.379

4.  The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals.

Authors:  Nathalie Le Roy; Philippe Ganot; Manuel Aranda; Denis Allemand; Sylvie Tambutté
Journal:  BMC Ecol Evol       Date:  2021-01-11

5.  Low-Temperature Synthesis of Disordered Dolomite and High-Magnesium Calcite in Ethanol-Water Solutions: The Solvation Effect and Implications.

Authors:  Yihang Fang; Fangfu Zhang; Gabriela A Farfan; Huifang Xu
Journal:  ACS Omega       Date:  2021-12-17

6.  Analysis of the proteinaceous components of the organic matrix of calcitic sclerites from the soft coral Sinularia sp.

Authors:  M Azizur Rahman; Ryuichi Shinjo; Tamotsu Oomori; Gert Wörheide
Journal:  PLoS One       Date:  2013-03-14       Impact factor: 3.240

Review 7.  An Overview of the Medical Applications of Marine Skeletal Matrix Proteins.

Authors:  M Azizur Rahman
Journal:  Mar Drugs       Date:  2016-09-12       Impact factor: 5.118

8.  Comparative Proteomics of Octocoral and Scleractinian Skeletomes and the Evolution of Coral Calcification.

Authors:  Nicola Conci; Martin Lehmann; Sergio Vargas; Gert Wörheide
Journal:  Genome Biol Evol       Date:  2020-09-01       Impact factor: 3.416

  8 in total

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