Literature DB >> 21767969

Personalized genomic medicine: lessons from the exome.

Benjamin D Solomon1, Daniel E Pineda-Alvarez, Donald W Hadley, Jamie K Teer, Praveen F Cherukuri, Nancy F Hansen, Pedro Cruz, Alice C Young, Robert W Blakesley, Brendan Lanpher, Stephanie Mayfield Gibson, Murat Sincan, Settara C Chandrasekharappa, James C Mullikin.   

Abstract

While genomic sequencing methods are powerful tools in the discovery of the genetic underpinnings of human disease, incidentally-revealed novel genomic risk factors may be equally important, both scientifically, and as relates to direct patient care. We performed whole-exome sequencing on a child with VACTERL association who suffered severe post-surgical neonatal pulmonary hypertension, and identified a potential novel genetic risk factor for this complication: a heterozygous mutation in CPSI. Newborn screening results from this patient's monozygotic twin provided evidence that this mutation, in combination with an environmental trigger (in this case, surgery), may have resulted in pulmonary artery hypertension due to inadequate nitric oxide production. Identification of this genetic risk factor allows for targeted medical preventative measures in this patient as well as relatives with the same mutation, and illustrates the power of incidental medical information unearthed by whole-exome sequencing. Published by Elsevier Inc.

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Year:  2011        PMID: 21767969      PMCID: PMC3171610          DOI: 10.1016/j.ymgme.2011.06.022

Source DB:  PubMed          Journal:  Mol Genet Metab        ISSN: 1096-7192            Impact factor:   4.797


  17 in total

1.  Nitric oxide precursors and congenital heart surgery: a randomized controlled trial of oral citrulline.

Authors:  Heidi A B Smith; Jeffrey A Canter; Karla G Christian; Davis C Drinkwater; Frank G Scholl; Brian W Christman; Geraldine D Rice; Frederick E Barr; Marshall L Summar
Journal:  J Thorac Cardiovasc Surg       Date:  2006-07       Impact factor: 5.209

2.  Neonatal pulmonary hypertension--urea-cycle intermediates, nitric oxide production, and carbamoyl-phosphate synthetase function.

Authors:  D L Pearson; S Dawling; W F Walsh; J L Haines; B W Christman; A Bazyk; N Scott; M L Summar
Journal:  N Engl J Med       Date:  2001-06-14       Impact factor: 91.245

3.  The VATER association. Vertebral defects, Anal atresia, T-E fistula with esophageal atresia, Radial and Renal dysplasia: a spectrum of associated defects.

Authors:  L Quan; D W Smith
Journal:  J Pediatr       Date:  1973-01       Impact factor: 4.406

4.  Molecular defects in human carbamoy phosphate synthetase I: mutational spectrum, diagnostic and protein structure considerations.

Authors:  Johannes Häberle; Oleg A Shchelochkov; Jing Wang; Panagiotis Katsonis; Lynn Hall; Sara Reiss; Angela Eeds; Alecia Willis; Meeta Yadav; Samantha Summar; Olivier Lichtarge; Vicente Rubio; Lee-Jun Wong; Marshall Summar
Journal:  Hum Mutat       Date:  2011-05-05       Impact factor: 4.878

5.  L-arginine and substance P reverse the pulmonary endothelial dysfunction caused by congenital heart surgery.

Authors:  I Schulze-Neick; D J Penny; M L Rigby; C Morgan; A Kelleher; P Collins; J Li; A Bush; E A Shinebourne; A N Redington
Journal:  Circulation       Date:  1999-08-17       Impact factor: 29.690

6.  Genetic variation in the mitochondrial enzyme carbamyl-phosphate synthetase I predisposes children to increased pulmonary artery pressure following surgical repair of congenital heart defects: a validated genetic association study.

Authors:  Jeffrey A Canter; Marshall L Summar; Heidi B Smith; Geraldine D Rice; Lynn D Hall; Marylyn D Ritchie; Alison A Motsinger; Karla G Christian; Davis C Drinkwater; Frank G Scholl; Karrie L Dyer; Ann L Kavanaugh-McHugh; Frederick E Barr
Journal:  Mitochondrion       Date:  2006-11-29       Impact factor: 4.160

7.  Carbamyl phosphate synthetase I deficiency. One base substitution in an exon of the CPS I gene causes a 9-basepair deletion due to aberrant splicing.

Authors:  R Hoshide; T Matsuura; Y Haraguchi; F Endo; M Yoshinaga; I Matsuda
Journal:  J Clin Invest       Date:  1993-05       Impact factor: 14.808

8.  Medical therapy for pulmonary arterial hypertension: ACCP evidence-based clinical practice guidelines.

Authors:  David B Badesch; Steve H Abman; Gregory S Ahearn; Robyn J Barst; Douglas C McCrory; Gerald Simonneau; Vallerie V McLaughlin
Journal:  Chest       Date:  2004-07       Impact factor: 9.410

9.  Relationship between carbamoyl-phosphate synthetase genotype and systemic vascular function.

Authors:  Marshall L Summar; James V Gainer; Mias Pretorius; Hector Malave; Stephanie Harris; Lynn D Hall; Alec Weisberg; Douglas E Vaughan; Brian W Christman; Nancy J Brown
Journal:  Hypertension       Date:  2004-01-12       Impact factor: 10.190

Review 10.  Oesophageal atresia.

Authors:  Lewis Spitz
Journal:  Orphanet J Rare Dis       Date:  2007-05-11       Impact factor: 4.123

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  10 in total

Review 1.  Familial occurrence of the VATER/VACTERL association.

Authors:  Alina Hilger; Charlotte Schramm; Markus Draaken; Sadaf S Mughal; Gabriel Dworschak; Enrika Bartels; Per Hoffmann; Markus M Nöthen; Heiko Reutter; Michael Ludwig
Journal:  Pediatr Surg Int       Date:  2012-03-16       Impact factor: 1.827

2.  Clinical genomic database.

Authors:  Benjamin D Solomon; Anh-Dao Nguyen; Kelly A Bear; Tyra G Wolfsberg
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-21       Impact factor: 11.205

3.  A genetic counselor's guide to using next-generation sequencing in clinical practice.

Authors:  Flavia M Facio; Kristy Lee; Julianne M O'Daniel
Journal:  J Genet Couns       Date:  2013-10-24       Impact factor: 2.537

4.  Sonic Hedgehog Signaling and VACTERL Association.

Authors:  E S-W Ngan; K-H Kim; C-C Hui
Journal:  Mol Syndromol       Date:  2013-02

5.  Exome Sequencing and High-Density Microarray Testing in Monozygotic Twin Pairs Discordant for Features of VACTERL Association.

Authors:  B D Solomon; D E Pineda-Alvarez; D W Hadley; N F Hansen; A Kamat; F X Donovan; S C Chandrasekharappa; S-K Hong; E Roessler; J C Mullikin
Journal:  Mol Syndromol       Date:  2013-02

Review 6.  VATER/VACTERL association: identification of seven new twin pairs, a systematic review of the literature, and a classical twin analysis.

Authors:  Enrika Bartels; Anna C Schulz; Nicole W Mora; Daniel E Pineda-Alvarez; Charlotte H W Wijers; Carlo M Marcelis; Rüdiger Stressig; Jochen Ritgen; Eberhard Schmiedeke; Manuel Mattheisen; Markus Draaken; Per Hoffmann; Alina C Hilger; Gabriel C Dworschak; Friederike Baudisch; Michael Ludwig; Soyhan Bagci; Andreas Müller; Ulrich Gembruch; Annegret Geipel; Christoph Berg; Peter Bartmann; Markus M Nöthen; Iris A L M van Rooij; Benjamin D Solomon; Heiko M Reutter
Journal:  Clin Dysmorphol       Date:  2012-10       Impact factor: 0.816

Review 7.  Growing up in the genomic era: implications of whole-genome sequencing for children, families, and pediatric practice.

Authors:  Christopher H Wade; Beth A Tarini; Benjamin S Wilfond
Journal:  Annu Rev Genomics Hum Genet       Date:  2013-07-15       Impact factor: 8.929

8.  Effect of Inhaled Nitric Oxide on Survival Without Bronchopulmonary Dysplasia in Preterm Infants: A Randomized Clinical Trial.

Authors:  Shabih U Hasan; Jim Potenziano; Girija G Konduri; Jose A Perez; Krisa P Van Meurs; M Whit Walker; Bradley A Yoder
Journal:  JAMA Pediatr       Date:  2017-11-01       Impact factor: 16.193

9.  A View on Genomic Medicine Activities in Africa: Implications for Policy.

Authors:  C Victor Jongeneel; Maritha J Kotze; Archana Bhaw-Luximon; Faisal M Fadlelmola; Yasmina J Fakim; Yosr Hamdi; Samar Kamal Kassim; Judit Kumuthini; Victoria Nembaware; Fouzia Radouani; Nicki Tiffin; Nicola Mulder
Journal:  Front Genet       Date:  2022-04-27       Impact factor: 4.599

10.  Whole-exome sequencing improves genetic testing accuracy in pulmonary artery hypertension.

Authors:  Xiaofang Zeng; Tianyu Lian; Jianhui Lin; Suqi Li; Haikuo Zheng; Chunyan Cheng; Jue Ye; Zhicheng Jing; Xiaojian Wang; Wei Huang
Journal:  Pulm Circ       Date:  2018-02-26       Impact factor: 3.017

  10 in total

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