Literature DB >> 21766868

One-pot preparation of mRNA/cDNA display by a novel and versatile puromycin-linker DNA.

Yuki Mochizuki1, Manish Biyani, Sachika Tsuji-Ueno, Miho Suzuki, Koichi Nishigaki, Yuzuru Husimi, Naoto Nemoto.   

Abstract

A rapid, easy, and robust preparation method for mRNA/cDNA display using a newly designed puromycin-linker DNA is presented. The new linker is structurally simple, easy to synthesize, and cost-effective for use in "in vitro peptide and protein selection". An introduction of RNase T1 nuclease site to the new linker facilitates the easy recovery of mRNA/cDNA displayed protein by an improvement of the efficiency of ligating the linker to mRNAs and efficient release of mRNA/cDNA displayed protein from the solid-phase (magnetic bead). For application demonstration, affinity selections were successfully performed. Furthermore, we introduced a "one-pot" preparation protocol to perform mRNA display easy. Unlike conventional approaches that require tedious and downstream multistep process including purification, this protocol will make the mRNA/cDNA display methods more practical and convenient and also facilitate the development of next-generation, high-throughput mRNA/cDNA display systems amenable to automation.

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Year:  2011        PMID: 21766868     DOI: 10.1021/co2000295

Source DB:  PubMed          Journal:  ACS Comb Sci        ISSN: 2156-8944            Impact factor:   3.784


  7 in total

1.  Interleukin-17A Peptide Aptamers with an Unexpected Binding Moiety Selected by cDNA Display under Heterogenous Conditions.

Authors:  Hiroki Anzai; Takuya Terai; Kanako Wakabayashi-Nakao; Taro Noguchi; Shigefumi Kumachi; Masayuki Tsuchiya; Naoto Nemoto
Journal:  ACS Med Chem Lett       Date:  2021-08-27       Impact factor: 4.632

2.  cDNA Display Mediated Immuno-PCR (cD-IPCR): A Novel PCR-based Antigen Detection Method.

Authors:  Chathuni Jayathilake; Takuya Terai; Naoto Nemoto
Journal:  Bio Protoc       Date:  2019-12-20

3.  Easy and rapid binding assay for functional analysis of disulfide-containing peptides by a pull-down method using a puromycin-linker and a cell-free translation system.

Authors:  Yutaro Tanemura; Yuki Mochizuki; Shigefumi Kumachi; Naoto Nemoto
Journal:  Biology (Basel)       Date:  2015-03-02

4.  Enhanced mRNA-protein fusion efficiency of a single-domain antibody by selection of mRNA display with additional random sequences in the terminal translated regions.

Authors:  Kazuki Takahashi; Masato Sunohara; Takuya Terai; Shigefumi Kumachi; Naoto Nemoto
Journal:  Biophys Physicobiol       Date:  2017-02-11

5.  An RNA Binding Peptide Consisting of Four Types of Amino Acid by in Vitro Selection Using cDNA Display.

Authors:  Shigefumi Kumachi; Yuzuru Husimi; Naoto Nemoto
Journal:  ACS Omega       Date:  2016-07-06

6.  Increasing the library size in cDNA display by optimizing purification procedures.

Authors:  Yuki Mochizuki; Shigefumi Kumachi; Koichi Nishigaki; Naoto Nemoto
Journal:  Biol Proced Online       Date:  2013-05-22       Impact factor: 3.244

7.  Development of Next-Generation Peptide Binders Using In vitro Display Technologies and Their Potential Applications.

Authors:  Akira Wada
Journal:  Front Immunol       Date:  2013-08-01       Impact factor: 7.561

  7 in total

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