Literature DB >> 21765877

Design and Application of Nucleic Acid Standards for Quantitative Detection of Enteric Viruses by Real-Time PCR.

Mónica Martínez-Martínez, Marta Diez-Valcarce, Marta Hernández, David Rodríguez-Lázaro.   

Abstract

Synthetic multiple-target RNA and DNA oligonucleotides were constructed for use as quantification standards for nucleic acid amplification assays for human norovirus genogroup I and II, hepatitis E virus, murine norovirus, human adenovirus, porcine adenovirus and bovine polyomavirus. This approach overcomes the problems related to the difficulty of obtaining practical quantities of viral RNA and DNA from these viruses. The quantification capacity of assays using the standards was excellent in each case (R(2) > 0.998 and PCR efficiency > 0.89). The copy numbers of the standards were equivalent to the genome equivalents of representative viruses (murine norovirus and human adenovirus), ensuring an accurate determination of virus presence. The availability of these standards should facilitate the implementation of nucleic acid amplification-based methods for quantitative virus detection.

Entities:  

Year:  2011        PMID: 21765877      PMCID: PMC3107435          DOI: 10.1007/s12560-011-9062-9

Source DB:  PubMed          Journal:  Food Environ Virol        ISSN: 1867-0334            Impact factor:   2.778


  18 in total

1.  Novel reference molecules for quantitation of genetically modified maize and soybean.

Authors:  Hideo Kuribara; Yoichiro Shindo; Takeshi Matsuoka; Ken Takubo; Satoshi Futo; Nobutaro Aoki; Takashi Hirao; Hiroshi Akiyama; Yukihiro Goda; Masatake Toyoda; Akihiro Hino
Journal:  J AOAC Int       Date:  2002 Sep-Oct       Impact factor: 1.913

2.  A rapid and direct real time PCR-based method for identification of Salmonella spp.

Authors:  David Rodriguez-Lázaro; Marta Hernández; Teresa Esteve; Jeffrey Hoorfar; Maria Pla
Journal:  J Microbiol Methods       Date:  2003-09       Impact factor: 2.363

3.  Quantitative real-time PCR of enteric viruses in influent and effluent samples from wastewater treatment plants in Italy.

Authors:  Giuseppina La Rosa; Manoochehr Pourshaban; Marcello Iaconelli; Michele Muscillo
Journal:  Ann Ist Super Sanita       Date:  2010       Impact factor: 1.663

4.  The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments.

Authors:  Stephen A Bustin; Vladimir Benes; Jeremy A Garson; Jan Hellemans; Jim Huggett; Mikael Kubista; Reinhold Mueller; Tania Nolan; Michael W Pfaffl; Gregory L Shipley; Jo Vandesompele; Carl T Wittwer
Journal:  Clin Chem       Date:  2009-02-26       Impact factor: 8.327

5.  Real-time RT-qPCR assay for the analysis of human influenza A virus transcription and replication dynamics.

Authors:  Diana Vester; Antje Lagoda; Diana Hoffmann; Claudius Seitz; Stefan Heldt; Katja Bettenbrock; Yvonne Genzel; Udo Reichl
Journal:  J Virol Methods       Date:  2010-04-28       Impact factor: 2.014

6.  Development of a qPCR assay for the quantification of porcine adenoviruses as an MST tool for swine fecal contamination in the environment.

Authors:  A Hundesa; C Maluquer de Motes; N Albinana-Gimenez; J Rodriguez-Manzano; S Bofill-Mas; E Suñen; R Rosina Girones
Journal:  J Virol Methods       Date:  2009-03-17       Impact factor: 2.014

7.  Etiological role of viruses in outbreaks of acute gastroenteritis in The Netherlands from 1994 through 2005.

Authors:  Sanela Svraka; Erwin Duizer; Harry Vennema; Erwin de Bruin; Bas van der Veer; Bram Dorresteijn; Marion Koopmans
Journal:  J Clin Microbiol       Date:  2007-03-14       Impact factor: 5.948

8.  Evaluation of removal of noroviruses during wastewater treatment, using real-time reverse transcription-PCR: different behaviors of genogroups I and II.

Authors:  Allegra Kyria da Silva; Jean-Claude Le Saux; Sylvain Parnaudeau; Monique Pommepuy; Menachem Elimelech; Françoise S Le Guyader
Journal:  Appl Environ Microbiol       Date:  2007-10-12       Impact factor: 4.792

9.  Detection limits of several commercial reverse transcriptase enzymes: impact on the low- and high-abundance transcript levels assessed by quantitative RT-PCR.

Authors:  Jean-Philippe Levesque-Sergerie; Mathieu Duquette; Catherine Thibault; Louis Delbecchi; Nathalie Bissonnette
Journal:  BMC Mol Biol       Date:  2007-10-22       Impact factor: 2.946

10.  Absolute quantitation of infectious salmon anaemia virus using different real-time reverse transcription PCR chemistries.

Authors:  Samuel T Workenhe; Molly J T Kibenge; Tokinori Iwamoto; Frederick S B Kibenge
Journal:  J Virol Methods       Date:  2008-09-26       Impact factor: 2.014

View more
  10 in total

1.  Presence of Human and Animal Viruses in Surface Waters in Vojvodina Province of Serbia.

Authors:  Gospava Lazić; Siniša Grubač; Diana Lupulović; Dejan Bugarski; Sava Lazić; Petar Knežević; Tamaš Petrović
Journal:  Food Environ Virol       Date:  2015-02-17       Impact factor: 2.778

2.  Assessment of the Virological Quality of Marine and Running Surface Waters in NW Greece: A Case Study.

Authors:  Petros Kokkinos; Hera Karayanni; Alexandra Meziti; Ria Feidaki; Spyros Paparrodopoulos; Apostolos Vantarakis
Journal:  Food Environ Virol       Date:  2018-04-25       Impact factor: 2.778

3.  Occurrence of human enteric viruses in commercial mussels at retail level in three European countries.

Authors:  Marta Diez-Valcarce; Petros Kokkinos; Kirsi Söderberg; Martijn Bouwknegt; Kris Willems; Ana Maria de Roda-Husman; Carl-Henrik von Bonsdorff; Maria Bellou; Marta Hernández; Leena Maunula; Apostolos Vantarakis; David Rodríguez-Lázaro
Journal:  Food Environ Virol       Date:  2012-05-12       Impact factor: 2.778

4.  Harmonised investigation of the occurrence of human enteric viruses in the leafy green vegetable supply chain in three European countries.

Authors:  P Kokkinos; I Kozyra; S Lazic; M Bouwknegt; S Rutjes; K Willems; R Moloney; A M de Roda Husman; A Kaupke; E Legaki; M D'Agostino; N Cook; A Rzeżutka; T Petrovic; A Vantarakis
Journal:  Food Environ Virol       Date:  2012-09-21       Impact factor: 2.778

5.  Occurrence of Human Cosavirus in Wastewater and River Water in Japan.

Authors:  Eiji Haramoto; Mikie Otagiri
Journal:  Food Environ Virol       Date:  2013-08-13       Impact factor: 2.778

Review 6.  Virus hazards from food, water and other contaminated environments.

Authors:  David Rodríguez-Lázaro; Nigel Cook; Franco M Ruggeri; Jane Sellwood; Abid Nasser; Maria Sao Jose Nascimento; Martin D'Agostino; Ricardo Santos; Juan Carlos Saiz; Artur Rzeżutka; Albert Bosch; Rosina Gironés; Annalaura Carducci; Michelle Muscillo; Katarina Kovač; Marta Diez-Valcarce; Apostolos Vantarakis; Carl-Henrik von Bonsdorff; Ana Maria de Roda Husman; Marta Hernández; Wim H M van der Poel
Journal:  FEMS Microbiol Rev       Date:  2011-10-24       Impact factor: 16.408

7.  Comparison of targeted next-generation sequencing for whole-genome sequencing of Hantaan orthohantavirus in Apodemus agrarius lung tissues.

Authors:  Jin Sun No; Won-Keun Kim; Seungchan Cho; Seung-Ho Lee; Jeong-Ah Kim; Daesang Lee; Dong Hyun Song; Se Hun Gu; Seong Tae Jeong; Michael R Wiley; Gustavo Palacios; Jin-Won Song
Journal:  Sci Rep       Date:  2019-11-12       Impact factor: 4.379

8.  Whole Genome Sequencing Characterization of HEV3-e and HEV3-f Subtypes among the Wild Boar Population in the Abruzzo Region, Italy: First Report.

Authors:  Giuseppe Aprea; Silvia Scattolini; Daniela D'Angelantonio; Alexandra Chiaverini; Valeria Di Lollo; Sabrina Olivieri; Maurilia Marcacci; Iolanda Mangone; Stefania Salucci; Salvatore Antoci; Cesare Cammà; Adriano Di Pasquale; Giacomo Migliorati; Francesco Pomilio
Journal:  Microorganisms       Date:  2020-09-11

9.  Porcine Blood and Liver as Sporadic Sources of Hepatitis E Virus (HEV) in the Production Chain of Offal-Derived Foodstuffs in Poland.

Authors:  E Bigoraj; W Paszkiewicz; A Rzeżutka
Journal:  Food Environ Virol       Date:  2021-04-23       Impact factor: 2.778

10.  Genotyping and Molecular Diagnosis of Hepatitis A Virus in Human Clinical Samples Using Multiplex PCR-Based Next-Generation Sequencing.

Authors:  Geum-Young Lee; Won-Keun Kim; Seungchan Cho; Kyungmin Park; Jongwoo Kim; Seung-Ho Lee; Jingyeong Lee; Young-Sun Lee; Ji Hoon Kim; Kwan Soo Byun; Jin-Won Song
Journal:  Microorganisms       Date:  2022-01-04
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.