Literature DB >> 21764908

Reinventing heterochromatin in budding yeasts: Sir2 and the origin recognition complex take center stage.

Meleah A Hickman1, Cara A Froyd, Laura N Rusche.   

Abstract

The transcriptional silencing of the cryptic mating-type loci in Saccharomyces cerevisiae is one of the best-studied models of repressive heterochromatin. However, this type of heterochromatin, which is mediated by the Sir proteins, has a distinct molecular composition compared to the more ubiquitous type of heterochromatin found in Schizosaccharomyces pombe, other fungi, animals, and plants and characterized by the presence of HP1 (heterochromatin protein 1). This review discusses how the loss of important heterochromatin proteins, including HP1, in the budding yeast lineage presented an evolutionary opportunity for the development and diversification of alternative varieties of heterochromatin, in which the conserved deacetylase Sir2 and the replication protein Orc1 play key roles. In addition, we highlight how this diversification has been facilitated by gene duplications and has contributed to adaptations in lifestyle.

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Year:  2011        PMID: 21764908      PMCID: PMC3187054          DOI: 10.1128/EC.05123-11

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN: 1535-9786


  116 in total

Review 1.  Regulation of heterochromatin by histone methylation and small RNAs.

Authors:  Shiv I S Grewal; Judd C Rice
Journal:  Curr Opin Cell Biol       Date:  2004-06       Impact factor: 8.382

2.  Centromeric DNA sequences in the pathogenic yeast Candida albicans are all different and unique.

Authors:  Kaustuv Sanyal; Mary Baum; John Carbon
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-22       Impact factor: 11.205

3.  The altered evolutionary trajectories of gene duplicates.

Authors:  Michael Lynch; Vaishali Katju
Journal:  Trends Genet       Date:  2004-11       Impact factor: 11.639

4.  RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing.

Authors:  Ken-ichi Noma; Tomoyasu Sugiyama; Hugh Cam; Andre Verdel; Martin Zofall; Songtao Jia; Danesh Moazed; Shiv I S Grewal
Journal:  Nat Genet       Date:  2004-10-10       Impact factor: 38.330

5.  Evidence that a complex of SIR proteins interacts with the silencer and telomere-binding protein RAP1.

Authors:  P Moretti; K Freeman; L Coodly; D Shore
Journal:  Genes Dev       Date:  1994-10-01       Impact factor: 11.361

6.  Allele specific determinants of homothallism in Saccharomyces lactis.

Authors:  A Herman; H Roman
Journal:  Genetics       Date:  1966-04       Impact factor: 4.562

7.  SIR2 is required for polycomb silencing and is associated with an E(Z) histone methyltransferase complex.

Authors:  Takehito Furuyama; Rakhee Banerjee; Thomas R Breen; Peter J Harte
Journal:  Curr Biol       Date:  2004-10-26       Impact factor: 10.834

8.  Human Orc2 localizes to centrosomes, centromeres and heterochromatin during chromosome inheritance.

Authors:  Supriya G Prasanth; Kannanganattu V Prasanth; Khalid Siddiqui; David L Spector; Bruce Stillman
Journal:  EMBO J       Date:  2004-06-24       Impact factor: 11.598

9.  sir2 mutants of Kluyveromyces lactis are hypersensitive to DNA-targeting drugs.

Authors:  X J Chen; G D Clark-Walker
Journal:  Mol Cell Biol       Date:  1994-07       Impact factor: 4.272

10.  Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast.

Authors:  A Hecht; T Laroche; S Strahl-Bolsinger; S M Gasser; M Grunstein
Journal:  Cell       Date:  1995-02-24       Impact factor: 41.582

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  25 in total

Review 1.  Epigenetics in Saccharomyces cerevisiae.

Authors:  Michael Grunstein; Susan M Gasser
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-07-01       Impact factor: 10.005

2.  Establishment of expression-state boundaries by Rif1 and Taz1 in fission yeast.

Authors:  Tea Toteva; Bethany Mason; Yutaka Kanoh; Peter Brøgger; Daniel Green; Janne Verhein-Hansen; Hisao Masai; Geneviève Thon
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

3.  Dimerization of Sir3 via its C-terminal winged helix domain is essential for yeast heterochromatin formation.

Authors:  Mariano Oppikofer; Stephanie Kueng; Jeremy J Keusch; Markus Hassler; Andreas G Ladurner; Heinz Gut; Susan M Gasser
Journal:  EMBO J       Date:  2013-01-08       Impact factor: 11.598

Review 4.  A Matter of Scale and Dimensions: Chromatin of Chromosome Landmarks in the Fungi.

Authors:  Allyson A Erlendson; Steven Friedman; Michael Freitag
Journal:  Microbiol Spectr       Date:  2017-07

5.  Mating-type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locus Saccharomyces cerevisiae system.

Authors:  Sara J Hanson; Kevin P Byrne; Kenneth H Wolfe
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

Review 6.  The Sum1/Ndt80 transcriptional switch and commitment to meiosis in Saccharomyces cerevisiae.

Authors:  Edward Winter
Journal:  Microbiol Mol Biol Rev       Date:  2012-03       Impact factor: 11.056

7.  Regional centromeres in the yeast Candida lusitaniae lack pericentromeric heterochromatin.

Authors:  Shivali Kapoor; Lisha Zhu; Cara Froyd; Tao Liu; Laura N Rusche
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-14       Impact factor: 11.205

Review 8.  Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina).

Authors:  Bernard A Dujon; Edward J Louis
Journal:  Genetics       Date:  2017-06       Impact factor: 4.562

Review 9.  Distributing meiotic crossovers for optimal fertility and evolution.

Authors:  Mridula Nambiar; Yu-Chien Chuang; Gerald R Smith
Journal:  DNA Repair (Amst)       Date:  2019-07-08

10.  Heat stress-induced Cup9-dependent transcriptional regulation of SIR2.

Authors:  Shyamasree Laskar; Sheeba K; Mrinal K Bhattacharyya; Achuthsankar S Nair; Pawan Dhar; Sunanda Bhattacharyya
Journal:  Mol Cell Biol       Date:  2014-11-10       Impact factor: 4.272

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