Literature DB >> 21764629

Quantitative plant phosphoproteomics.

Kelli G Kline-Jonakin1, Gregory A Barrett-Wilt, Michael R Sussman.   

Abstract

Protein phosphorylation is a major post-translational modification in plants crucial for the regulation of diverse cellular functions. In the early stages of this field, efforts were focused on the qualitative detection, identification, and cataloging of in vivo protein phosphorylation sites. Recently these studies have advanced into utilizing quantitative mass spectrometric measurements, capable of dynamically monitoring changes in phosphorylation levels in response to genetic and environmental alterations. This review will highlight current untargeted and targeted mass spectral technologies used for quantitative phosphoproteome measurements in plants, and provide a discussion of these phosphorylation changes in relation to important biological events.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21764629      PMCID: PMC3253357          DOI: 10.1016/j.pbi.2011.06.008

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  19 in total

1.  Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS.

Authors:  Scott A Gerber; John Rush; Olaf Stemman; Marc W Kirschner; Steven P Gygi
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-27       Impact factor: 11.205

Review 2.  Protein quantitation using isotope-assisted mass spectrometry.

Authors:  Kelli G Kline; Michael R Sussman
Journal:  Annu Rev Biophys       Date:  2010       Impact factor: 12.981

Review 3.  Quantitation in mass-spectrometry-based proteomics.

Authors:  Waltraud X Schulze; Björn Usadel
Journal:  Annu Rev Plant Biol       Date:  2010       Impact factor: 26.379

4.  Molecular characterization of mutant Arabidopsis plants with reduced plasma membrane proton pump activity.

Authors:  Miyoshi Haruta; Heather L Burch; Rachel B Nelson; Greg Barrett-Wilt; Kelli G Kline; Sheher B Mohsin; Jeffery C Young; Marisa S Otegui; Michael R Sussman
Journal:  J Biol Chem       Date:  2010-03-26       Impact factor: 5.157

Review 5.  Signaling through MAP kinase networks in plants.

Authors:  Neeti Sanan Mishra; Renu Tuteja; Narendra Tuteja
Journal:  Arch Biochem Biophys       Date:  2006-05-24       Impact factor: 4.013

Review 6.  On target with a new mechanism for the regulation of protein phosphorylation.

Authors:  M J Hubbard; P Cohen
Journal:  Trends Biochem Sci       Date:  1993-05       Impact factor: 13.807

7.  Comparison of full versus partial metabolic labeling for quantitative proteomics analysis in Arabidopsis thaliana.

Authors:  Edward L Huttlin; Adrian D Hegeman; Amy C Harms; Michael R Sussman
Journal:  Mol Cell Proteomics       Date:  2007-02-09       Impact factor: 5.911

8.  Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes.

Authors:  Paul A Grimsrud; Désirée den Os; Craig D Wenger; Danielle L Swaney; Daniel Schwartz; Michael R Sussman; Jean-Michel Ané; Joshua J Coon
Journal:  Plant Physiol       Date:  2009-11-18       Impact factor: 8.340

9.  Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins.

Authors:  Sang-Youl Park; Pauline Fung; Noriyuki Nishimura; Davin R Jensen; Hiroaki Fujii; Yang Zhao; Shelley Lumba; Julia Santiago; Americo Rodrigues; Tsz-Fung F Chow; Simon E Alfred; Dario Bonetta; Ruth Finkelstein; Nicholas J Provart; Darrell Desveaux; Pedro L Rodriguez; Peter McCourt; Jian-Kang Zhu; Julian I Schroeder; Brian F Volkman; Sean R Cutler
Journal:  Science       Date:  2009-04-30       Impact factor: 47.728

10.  PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor.

Authors:  Joshua L Heazlewood; Pawel Durek; Jan Hummel; Joachim Selbig; Wolfram Weckwerth; Dirk Walther; Waltraud X Schulze
Journal:  Nucleic Acids Res       Date:  2007-11-04       Impact factor: 16.971

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  13 in total

1.  Evidence for phosphorylation of the major seed storage protein of the common bean and its phosphorylation-dependent degradation during germination.

Authors:  María López-Pedrouso; Jana Alonso; Carlos Zapata
Journal:  Plant Mol Biol       Date:  2013-10-20       Impact factor: 4.076

2.  A peptide hormone and its receptor protein kinase regulate plant cell expansion.

Authors:  Miyoshi Haruta; Grzegorz Sabat; Kelly Stecker; Benjamin B Minkoff; Michael R Sussman
Journal:  Science       Date:  2014-01-24       Impact factor: 47.728

Review 3.  Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks.

Authors:  George W Bassel; Allison Gaudinier; Siobhan M Brady; Lars Hennig; Seung Y Rhee; Ive De Smet
Journal:  Plant Cell       Date:  2012-10-30       Impact factor: 11.277

Review 4.  Regulation of the plasma membrane proton pump (H(+)-ATPase) by phosphorylation.

Authors:  Miyoshi Haruta; William M Gray; Michael R Sussman
Journal:  Curr Opin Plant Biol       Date:  2015-10-24       Impact factor: 7.834

5.  Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.

Authors:  Xu Na Wu; Clara Sanchez Rodriguez; Heidi Pertl-Obermeyer; Gerhard Obermeyer; Waltraud X Schulze
Journal:  Mol Cell Proteomics       Date:  2013-07-02       Impact factor: 5.911

6.  dbPPT: a comprehensive database of protein phosphorylation in plants.

Authors:  Han Cheng; Wankun Deng; Yongbo Wang; Jian Ren; Zexian Liu; Yu Xue
Journal:  Database (Oxford)       Date:  2014-12-22       Impact factor: 3.451

7.  Quantitative analysis of changes in the phosphoproteome of maize induced by the plant hormone salicylic acid.

Authors:  Liuji Wu; Xiuli Hu; Shunxi Wang; Lei Tian; Yanjie Pang; Zanping Han; Liancheng Wu; Yanhui Chen
Journal:  Sci Rep       Date:  2015-12-11       Impact factor: 4.379

Review 8.  Proteomics of Rice-Magnaporthe oryzae Interaction: What Have We Learned So Far?

Authors:  Qingfeng Meng; Ravi Gupta; Cheol Woo Min; Soon Wook Kwon; Yiming Wang; Byoung Il Je; Yu-Jin Kim; Jong-Seong Jeon; Ganesh Kumar Agrawal; Randeep Rakwal; Sun Tae Kim
Journal:  Front Plant Sci       Date:  2019-10-29       Impact factor: 5.753

9.  Functional proteomics of barley and barley chloroplasts - strategies, methods and perspectives.

Authors:  Jørgen Petersen; Adelina Rogowska-Wrzesinska; Ole N Jensen
Journal:  Front Plant Sci       Date:  2013-03-18       Impact factor: 5.753

10.  Advancements in the analysis of the Arabidopsis plasma membrane proteome.

Authors:  Koste A Yadeta; J Mitch Elmore; Gitta Coaker
Journal:  Front Plant Sci       Date:  2013-04-11       Impact factor: 5.753

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