Literature DB >> 21763476

All roads lead to chromatin: Multiple pathways for histone deposition.

Qing Li, Rebecca Burgess, Zhiguo Zhang.   

Abstract

Chromatin, a complex of DNA and associated proteins, governs diverse processes including gene transcription, DNA replication and DNA repair. The fundamental unit of chromatin is the nucleosome, consisting of 147bp of DNA wound about 1.6 turns around a histone octamer of one (H3-H4)(2) tetramer and two H2A-H2B dimers. In order to form nucleosomes, (H3-H4)(2) tetramers are deposited first, followed by the rapid deposition of H2A-H2B. It is believed that the assembly of (H3-H4)(2) tetramers into nucleosomes is the rate-limiting step of nucleosome assembly. Moreover, assembly of H3-H4 into nucleosomes following DNA replication, DNA repair and gene transcription is likely to be a key step in the inheritance of epigenetic information and maintenance of genome integrity. In this review, we discuss how nucleosome assembly of H3-H4 is regulated by concerted actions of histone chaperones and modifications on newly synthesized H3 and H4. This article is part of a Special Issue entitled: Histone chaperones and Chromatin assembly. Copyright Â
© 2011. Published by Elsevier B.V.

Entities:  

Year:  2011        PMID: 21763476      PMCID: PMC3932183          DOI: 10.1016/j.bbagrm.2011.06.013

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  124 in total

1.  A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response.

Authors:  Hiroshi Masumoto; David Hawke; Ryuji Kobayashi; Alain Verreault
Journal:  Nature       Date:  2005-07-14       Impact factor: 49.962

2.  Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes.

Authors:  Toshiaki Tsubota; Christopher E Berndsen; Judith A Erkmann; Corey L Smith; Lanhao Yang; Michael A Freitas; John M Denu; Paul D Kaufman
Journal:  Mol Cell       Date:  2007-02-22       Impact factor: 17.970

3.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

4.  PCNA connects DNA replication to epigenetic inheritance in yeast.

Authors:  Z Zhang; K Shibahara; B Stillman
Journal:  Nature       Date:  2000-11-09       Impact factor: 49.962

5.  Nucleosomal DNA regulates the core-histone-binding subunit of the human Hat1 acetyltransferase.

Authors:  A Verreault; P D Kaufman; R Kobayashi; B Stillman
Journal:  Curr Biol       Date:  1998-01-15       Impact factor: 10.834

6.  GCN5 is a positive regulator of origins of DNA replication in Saccharomyces cerevisiae.

Authors:  Maria Claudia Espinosa; Muhammad Attiq Rehman; Patricia Chisamore-Robert; Daniel Jeffery; Krassimir Yankulov
Journal:  PLoS One       Date:  2010-01-29       Impact factor: 3.240

7.  Cell cycle-dependent deacetylation of telomeric histone H3 lysine K56 by human SIRT6.

Authors:  Eriko Michishita; Ronald A McCord; Lisa D Boxer; Matthew F Barber; Tao Hong; Or Gozani; Katrin F Chua
Journal:  Cell Cycle       Date:  2009-08-26       Impact factor: 4.534

8.  The histone chaperone Asf1p mediates global chromatin disassembly in vivo.

Authors:  Melissa W Adkins; Jessica K Tyler
Journal:  J Biol Chem       Date:  2004-09-26       Impact factor: 5.157

9.  Saccharomyces cerevisiae chromatin-assembly factors that act during DNA replication function in the maintenance of genome stability.

Authors:  Kyungjae Myung; Vincent Pennaneach; Ellen S Kats; Richard D Kolodner
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-15       Impact factor: 11.205

10.  Acetylation of lysine 56 of histone H3 catalyzed by RTT109 and regulated by ASF1 is required for replisome integrity.

Authors:  Junhong Han; Hui Zhou; Zhizhong Li; Rui-Ming Xu; Zhiguo Zhang
Journal:  J Biol Chem       Date:  2007-08-09       Impact factor: 5.157

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  14 in total

1.  A genetic screen for high copy number suppressors of the synthetic lethality between elg1Δ and srs2Δ in yeast.

Authors:  Inbal Gazy; Batia Liefshitz; Alex Bronstein; Oren Parnas; Nir Atias; Roded Sharan; Martin Kupiec
Journal:  G3 (Bethesda)       Date:  2013-05-20       Impact factor: 3.154

2.  Rtt101-Mms1-Mms22 coordinates replication-coupled sister chromatid cohesion and nucleosome assembly.

Authors:  Jingjing Zhang; Di Shi; Xiaoli Li; Lin Ding; Jun Tang; Cong Liu; Katsuhiko Shirahige; Qinhong Cao; Huiqiang Lou
Journal:  EMBO Rep       Date:  2017-06-14       Impact factor: 8.807

3.  Antitumor activity of SAHA, a novel histone deacetylase inhibitor, against murine B cell lymphoma A20 cells in vitro and in vivo.

Authors:  Bohan Yang; Dandan Yu; Jingwen Liu; Kunyu Yang; Gang Wu; Hongli Liu
Journal:  Tumour Biol       Date:  2015-02-04

4.  Histone chaperones link histone nuclear import and chromatin assembly.

Authors:  Kristin M Keck; Lucy F Pemberton
Journal:  Biochim Biophys Acta       Date:  2011-10-08

Review 5.  Eukaryotic Translesion DNA Synthesis on the Leading and Lagging Strands: Unique Detours around the Same Obstacle.

Authors:  Mark Hedglin; Stephen J Benkovic
Journal:  Chem Rev       Date:  2017-05-12       Impact factor: 60.622

6.  Reduced Histone Expression or a Defect in Chromatin Assembly Induces Respiration.

Authors:  Luciano Galdieri; Tiantian Zhang; Daniella Rogerson; Ales Vancura
Journal:  Mol Cell Biol       Date:  2016-01-19       Impact factor: 4.272

7.  The Ddc1-Mec3-Rad17 sliding clamp regulates histone-histone chaperone interactions and DNA replication-coupled nucleosome assembly in budding yeast.

Authors:  Rebecca J Burgess; Junhong Han; Zhiguo Zhang
Journal:  J Biol Chem       Date:  2014-02-25       Impact factor: 5.157

8.  Cigarette smoke component acrolein modulates chromatin assembly by inhibiting histone acetylation.

Authors:  Danqi Chen; Lei Fang; Hongjie Li; Moon-shong Tang; Chunyuan Jin
Journal:  J Biol Chem       Date:  2013-06-14       Impact factor: 5.157

9.  A role for H2B ubiquitylation in DNA replication.

Authors:  Kelly M Trujillo; Mary Ann Osley
Journal:  Mol Cell       Date:  2012-10-25       Impact factor: 17.970

10.  The SCFDia2 ubiquitin E3 ligase ubiquitylates Sir4 and functions in transcriptional silencing.

Authors:  Rebecca J Burgess; Hui Zhou; Junhong Han; Qing Li; Zhiguo Zhang
Journal:  PLoS Genet       Date:  2012-07-26       Impact factor: 5.917

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