Literature DB >> 21761684

Detection of crossing white matter fibers with high-order tensors and rank-k decompositions.

Fangxiang Jiao1, Yaniv Gur, Chris R Johnson, Sarang Joshi.   

Abstract

Fundamental to high angular resolution diffusion imaging (HARDI), is the estimation of a positive-semidefinite orientation distribution function (ODF) and extracting the diffusion properties (e.g., fiber directions). In this work we show that these two goals can be achieved efficiently by using homogeneous polynomials to represent the ODF in the spherical deconvolution approach, as was proposed in the Cartesian Tensor-ODF (CT-ODF) formulation. Based on this formulation we first suggest an estimation method for positive-semidefinite ODF by solving a linear programming problem that does not require special parameterization of the ODF. We also propose a rank-k tensor decomposition, known as CP decomposition, to extract the fibers information from the estimated ODF. We show that this decomposition is superior to the fiber direction estimation via ODF maxima detection as it enables one to reach the full fiber separation resolution of the estimation technique. We assess the accuracy of this new framework by applying it to synthetic and experimentally obtained HARDI data.

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Mesh:

Year:  2011        PMID: 21761684      PMCID: PMC3327305          DOI: 10.1007/978-3-642-22092-0_44

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  16 in total

1.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

2.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

3.  Maximum entropy spherical deconvolution for diffusion MRI.

Authors:  Daniel C Alexander
Journal:  Inf Process Med Imaging       Date:  2005

4.  Regularized, fast, and robust analytical Q-ball imaging.

Authors:  Maxime Descoteaux; Elaine Angelino; Shaun Fitzgibbons; Rachid Deriche
Journal:  Magn Reson Med       Date:  2007-09       Impact factor: 4.668

5.  Estimation of fiber orientation probability density functions in high angular resolution diffusion imaging.

Authors:  Antonio Tristán-Vega; Carl-Fredrik Westin; Santiago Aja-Fernández
Journal:  Neuroimage       Date:  2009-04-22       Impact factor: 6.556

6.  On computing the underlying fiber directions from the diffusion orientation distribution function.

Authors:  Luke Bloy; Ragini Verma
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

7.  Estimating crossing fibers: a tensor decomposition approach.

Authors:  Thomas Schultz; Hans-Peter Seidel
Journal:  IEEE Trans Vis Comput Graph       Date:  2008 Nov-Dec       Impact factor: 4.579

8.  A UNIFIED FRAMEWORK FOR ESTIMATING DIFFUSION TENSORS OF ANY ORDER WITH SYMMETRIC POSITIVE-DEFINITE CONSTRAINTS.

Authors:  Angelos Barmpoutis; Baba C Vemuri
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2010-04-14

9.  Adaptive kernels for multi-fiber reconstruction.

Authors:  Angelos Barmpoutis; Bing Jian; Baba C Vemuri
Journal:  Inf Process Med Imaging       Date:  2009

10.  New diffusion phantoms dedicated to the study and validation of high-angular-resolution diffusion imaging (HARDI) models.

Authors:  Cyril Poupon; Bernard Rieul; Irina Kezele; Muriel Perrin; Fabrice Poupon; Jean-François Mangin
Journal:  Magn Reson Med       Date:  2008-12       Impact factor: 4.668

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  5 in total

1.  A PRELIMINARY STUDY ON THE EFFECT OF MOTION CORRECTION ON HARDI RECONSTRUCTION.

Authors:  Shireen Elhabian; Yaniv Gur; Clement Vachet; Joseph Piven; Martin Styner; Ilana Leppert; G Bruce Pike; Guido Gerig
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2014-04

2.  White matter structure assessment from reduced HARDI data using low-rank polynomial approximations.

Authors:  Yaniv Gur; Fangxiang Jiao; Stella Xinghua Zhu; Chris R Johnson
Journal:  Med Image Comput Comput Assist Interv       Date:  2012-10

3.  Uncertainty Visualization in HARDI based on Ensembles of ODFs.

Authors:  Fangxiang Jiao; Jeff M Phillips; Yaniv Gur; Chris R Johnson
Journal:  IEEE Pac Vis Symp       Date:  2012-12-31

4.  Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use?

Authors:  Lipeng Ning; Frederik Laun; Yaniv Gur; Edward V R DiBella; Samuel Deslauriers-Gauthier; Thinhinane Megherbi; Aurobrata Ghosh; Mauro Zucchelli; Gloria Menegaz; Rutger Fick; Samuel St-Jean; Michael Paquette; Ramon Aranda; Maxime Descoteaux; Rachid Deriche; Lauren O'Donnell; Yogesh Rathi
Journal:  Med Image Anal       Date:  2015-11-10       Impact factor: 8.545

5.  Crossing fibers detection with an analytical high order tensor decomposition.

Authors:  T Megherbi; M Kachouane; F Oulebsir-Boumghar; R Deriche
Journal:  Comput Math Methods Med       Date:  2014-08-27       Impact factor: 2.238

  5 in total

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