Literature DB >> 21761651

Optimal data-driven sparse parameterization of diffeomorphisms for population analysis.

Sandy Durrleman1, Marcel Prastawa, Guido Gerig, Sarang Joshi.   

Abstract

In this paper, we propose a novel approach for intensity based atlas construction from a population of anatomical images, that estimates not only a template representative image but also a common optimal parameterization of the anatomical variations evident in the population. First, we introduce a discrete parameterization of large diffeomorphic deformations based on a finite set of control points, so that deformations are characterized by a low dimensional geometric descriptor. Second, we optimally estimate the position of the control points in the template image domain. As a consequence, control points move to where they are needed most to capture the geometric variability evident in the population. Third, the optimal number of control points is estimated by using a log - L1 sparsity penalty. The estimation of the template image, the template-to-subject mappings and their optimal parameterization is done via a single gradient descent optimization, and at the same computational cost as independent template-to-subject registrations. We present results that show that the anatomical variability of the population can be encoded efficiently with these compact and adapted geometric descriptors.

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Year:  2011        PMID: 21761651      PMCID: PMC3758258          DOI: 10.1007/978-3-642-22092-0_11

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  9 in total

1.  Geodesic Shooting for Computational Anatomy.

Authors:  Michael I Miller; Alain Trouvé; Laurent Younes
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2.  Multivariate statistical analysis of deformation momenta relating anatomical shape to neuropsychological measures.

Authors:  Nikhil Singh; P Thomas Fletcher; J Samuel Preston; Linh Ha; Richard King; J Stephen Marron; Michael Wiener; Sarang Joshi
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

3.  A log-Euclidean framework for statistics on diffeomorphisms.

Authors:  Vincent Arsigny; Olivier Commowick; Xavier Pennec; Nicholas Ayache
Journal:  Med Image Comput Comput Assist Interv       Date:  2006

4.  A hamiltonian particle method for diffeomorphic image registration.

Authors:  Stephen Marsland; Robert McLachlan
Journal:  Inf Process Med Imaging       Date:  2007

5.  Landmark matching via large deformation diffeomorphisms.

Authors:  S C Joshi; M I Miller
Journal:  IEEE Trans Image Process       Date:  2000       Impact factor: 10.856

6.  Statistical models of sets of curves and surfaces based on currents.

Authors:  Stanley Durrleman; Xavier Pennec; Alain Trouvé; Nicholas Ayache
Journal:  Med Image Anal       Date:  2009-07-17       Impact factor: 8.545

7.  Identifying global anatomical differences: deformation-based morphometry.

Authors:  J Ashburner; C Hutton; R Frackowiak; I Johnsrude; C Price; K Friston
Journal:  Hum Brain Mapp       Date:  1998       Impact factor: 5.038

8.  Three-dimensional brain growth abnormalities in childhood-onset schizophrenia visualized by using tensor-based morphometry.

Authors:  Nitin Gogtay; Allen Lu; Alex D Leow; Andrea D Klunder; Agatha D Lee; Alex Chavez; Deanna Greenstein; Jay N Giedd; Arthur W Toga; Judith L Rapoport; Paul M Thompson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

9.  Diffeomorphic registration using B-splines.

Authors:  Daniel Rueckert; Paul Aljabar; Rolf A Heckemann; Joseph V Hajnal; Alexander Hammers
Journal:  Med Image Comput Comput Assist Interv       Date:  2006
  9 in total
  7 in total

1.  Efficient Parallel Transport in the Group of Diffeomorphisms via Reduction to the Lie Algebra.

Authors:  Kristen M Campbell; P Thomas Fletcher
Journal:  Graphs Biomed Image Anal Comput Anat Imaging Genet (2017)       Date:  2017-09-08

2.  GEODESIC REGRESSION OF IMAGE AND SHAPE DATA FOR IMPROVED MODELING OF 4D TRAJECTORIES.

Authors:  James Fishbaugh; Marcel Prastawa; Guido Gerig; Stanley Durrleman
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2014-04

3.  Geodesic shape regression with multiple geometries and sparse parameters.

Authors:  James Fishbaugh; Stanley Durrleman; Marcel Prastawa; Guido Gerig
Journal:  Med Image Anal       Date:  2017-04-05       Impact factor: 8.545

4.  Predicting infant cortical surface development using a 4D varifold-based learning framework and local topography-based shape morphing.

Authors:  Islem Rekik; Gang Li; Weili Lin; Dinggang Shen
Journal:  Med Image Anal       Date:  2015-11-10       Impact factor: 8.545

5.  Topology preserving atlas construction from shape data without correspondence using sparse parameters.

Authors:  Stanley Durrleman; Marcel Prastawa; Julie R Korenberg; Sarang Joshi; Alain Trouvé; Guido Gerig
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

6.  Morphometry of anatomical shape complexes with dense deformations and sparse parameters.

Authors:  Stanley Durrleman; Marcel Prastawa; Nicolas Charon; Julie R Korenberg; Sarang Joshi; Guido Gerig; Alain Trouvé
Journal:  Neuroimage       Date:  2014-06-26       Impact factor: 6.556

7.  Statistical Shape Analysis of Large Datasets Based on Diffeomorphic Iterative Centroids.

Authors:  Claire Cury; Joan A Glaunès; Roberto Toro; Marie Chupin; Gunter Schumann; Vincent Frouin; Jean-Baptiste Poline; Olivier Colliot
Journal:  Front Neurosci       Date:  2018-11-12       Impact factor: 4.677

  7 in total

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