Literature DB >> 21754909

12-Benzoyl-2-methyl-naphtho-[2,3-b]indolizine-6,11-dione.

Yun Liu1, Su-Hui Wang, Shu-Ren Shen, Zong-Hui Yang.   

Abstract

In the title compound, C(24)H(15)NO(3), the fused naphthaquin-one-pyrrole unit is approximately planar, the naphthaquinone ring system making a dihedral angle of 2.91 (10)° with the pyrrole ring. The plane of the pyrrole ring makes a dihedral angle 61.64 (14)° with that of the benzene ring of the benzoyl-methyl-ene group. The crystal structure is stablized by intra-molecular C-H⋯O inter-actions.

Entities:  

Year:  2011        PMID: 21754909      PMCID: PMC3120298          DOI: 10.1107/S1600536811019623

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the properties of indolizine, see Olden et al. (1991 ▶); Jaffrezou et al. (1992 ▶). For the preparation of benzo[f]pyrido[1,2-a]indole-6,11-dione, see Pratt et al. (1957 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C24H15NO3 M = 365.37 Monoclinic, a = 7.1260 (14) Å b = 10.125 (2) Å c = 24.352 (5) Å β = 90.22 (3)° V = 1757.0 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 295 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (XCAD4; Harms & Wocadlo, 1995 ▶) T min = 0.973, T max = 0.991 3371 measured reflections 3103 independent reflections 1555 reflections with I > 2σ(I) R int = 0.062 3 standard reflections every 200 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.169 S = 1.02 3103 reflections 254 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811019623/ds2112sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019623/ds2112Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811019623/ds2112Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H15NO3F(000) = 760
Mr = 365.37Dx = 1.381 Mg m3
Monoclinic, P21/cMelting point: 538 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 7.1260 (14) ÅCell parameters from 25 reflections
b = 10.125 (2) Åθ = 9–12°
c = 24.352 (5) ŵ = 0.09 mm1
β = 90.22 (3)°T = 295 K
V = 1757.0 (6) Å3Block, red
Z = 40.30 × 0.20 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer1555 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.062
graphiteθmax = 25.0°, θmin = 1.7°
ω/2θ scansh = −8→0
Absorption correction: ψ scan (XCAD4; Harms & Wocadlo, 1995)k = −12→0
Tmin = 0.973, Tmax = 0.991l = −28→28
3371 measured reflections3 standard reflections every 200 reflections
3103 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.169H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0675P)2 + 0.0651P] where P = (Fo2 + 2Fc2)/3
3103 reflections(Δ/σ)max = 0.006
254 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N0.1808 (3)0.6115 (3)0.44928 (11)0.0478 (7)
C240.2311 (4)0.4972 (3)0.47630 (13)0.0446 (8)
O30.2792 (4)0.5789 (3)0.56513 (10)0.0699 (8)
O20.2339 (4)0.1643 (3)0.42739 (10)0.0806 (9)
C230.3188 (4)0.2429 (3)0.51506 (14)0.0492 (9)
C220.3265 (4)0.3501 (3)0.55128 (14)0.0494 (9)
C210.2309 (4)0.3959 (3)0.43837 (13)0.0470 (8)
C200.1497 (4)0.5816 (3)0.39425 (14)0.0490 (9)
C190.3601 (5)0.1177 (4)0.53431 (16)0.0630 (10)
H190.35110.04590.51070.076*
C180.2598 (5)0.2599 (4)0.45665 (15)0.0571 (10)
C170.2775 (5)0.4848 (4)0.53324 (14)0.0508 (9)
C160.1643 (5)0.7379 (4)0.46870 (15)0.0553 (9)
H160.18480.75570.50570.066*
C150.1807 (5)0.4458 (4)0.38678 (13)0.0525 (9)
C140.3024 (6)0.2844 (3)0.31344 (13)0.0572 (10)
O10.0328 (4)0.4141 (3)0.30306 (11)0.0967 (10)
C130.1000 (5)0.6856 (4)0.35921 (15)0.0594 (10)
H130.07750.66840.32230.071*
C120.1184 (5)0.8354 (4)0.43411 (17)0.0633 (11)
H120.10920.92130.44750.076*
C110.3777 (5)0.3285 (4)0.60562 (14)0.0621 (10)
H110.38200.39880.63020.075*
C100.4852 (6)0.2881 (4)0.33161 (15)0.0648 (11)
H100.52080.34930.35820.078*
C90.0840 (5)0.8116 (4)0.37831 (17)0.0617 (10)
C80.1615 (5)0.3819 (4)0.33307 (15)0.0611 (10)
C70.4220 (5)0.2029 (5)0.62324 (17)0.0725 (12)
H70.45770.18940.65960.087*
C60.2519 (7)0.1918 (4)0.27499 (15)0.0780 (13)
H60.12910.18970.26190.094*
C50.3799 (9)0.1024 (5)0.25553 (18)0.0969 (17)
H50.34240.03770.23070.116*
C40.4142 (5)0.0979 (4)0.58804 (17)0.0733 (12)
H40.44530.01370.60030.088*
C30.6168 (7)0.2010 (4)0.31047 (18)0.0839 (13)
H30.74130.20540.32190.101*
C20.5615 (9)0.1081 (5)0.2725 (2)0.0987 (17)
H20.64880.04910.25830.118*
C10.0376 (6)0.9245 (4)0.34044 (18)0.0885 (14)
H1A0.02160.89170.30370.133*
H1B0.13790.98770.34120.133*
H1C−0.07650.96600.35230.133*
U11U22U33U12U13U23
N0.0436 (17)0.0484 (18)0.0514 (18)−0.0055 (14)0.0046 (13)−0.0026 (15)
C240.0354 (18)0.048 (2)0.050 (2)0.0007 (16)0.0012 (16)−0.0009 (18)
O30.083 (2)0.0695 (18)0.0574 (16)−0.0013 (15)−0.0041 (13)−0.0141 (14)
O20.123 (3)0.0532 (17)0.0652 (17)−0.0080 (16)−0.0049 (16)−0.0040 (14)
C230.0345 (19)0.055 (2)0.058 (2)0.0068 (17)0.0040 (15)0.0040 (19)
C220.037 (2)0.059 (2)0.051 (2)0.0021 (17)0.0061 (16)0.0020 (19)
C210.040 (2)0.049 (2)0.052 (2)−0.0050 (17)0.0013 (16)−0.0032 (18)
C200.039 (2)0.058 (2)0.050 (2)−0.0035 (17)0.0000 (16)0.0002 (19)
C190.056 (2)0.061 (3)0.072 (3)0.010 (2)0.004 (2)0.003 (2)
C180.058 (2)0.058 (2)0.055 (2)−0.008 (2)0.0059 (18)−0.003 (2)
C170.041 (2)0.056 (2)0.055 (2)−0.0032 (17)0.0051 (17)−0.005 (2)
C160.050 (2)0.055 (2)0.060 (2)−0.0076 (18)0.0073 (18)−0.007 (2)
C150.052 (2)0.059 (2)0.046 (2)−0.0061 (18)−0.0012 (16)−0.0006 (19)
C140.079 (3)0.053 (2)0.040 (2)−0.011 (2)0.0035 (19)0.0030 (18)
O10.099 (2)0.114 (3)0.077 (2)0.009 (2)−0.0381 (18)−0.0112 (18)
C130.054 (2)0.067 (3)0.057 (2)−0.001 (2)−0.0025 (18)0.009 (2)
C120.062 (3)0.050 (2)0.077 (3)−0.011 (2)0.004 (2)0.004 (2)
C110.054 (2)0.081 (3)0.051 (2)−0.002 (2)0.0008 (18)0.006 (2)
C100.082 (3)0.055 (2)0.057 (2)−0.001 (2)0.004 (2)−0.001 (2)
C90.050 (2)0.059 (3)0.076 (3)−0.002 (2)0.0022 (19)0.011 (2)
C80.068 (3)0.065 (3)0.049 (2)−0.011 (2)−0.012 (2)0.003 (2)
C70.058 (3)0.098 (3)0.062 (3)0.007 (2)0.002 (2)0.020 (3)
C60.119 (4)0.069 (3)0.046 (2)−0.012 (3)−0.001 (2)−0.004 (2)
C50.166 (6)0.070 (3)0.056 (3)−0.010 (4)0.017 (3)−0.015 (2)
C40.072 (3)0.076 (3)0.072 (3)0.018 (2)0.008 (2)0.020 (3)
C30.089 (3)0.079 (3)0.084 (3)0.012 (3)0.025 (3)0.009 (3)
C20.143 (5)0.075 (3)0.079 (4)0.014 (4)0.046 (3)−0.002 (3)
C10.091 (3)0.072 (3)0.102 (3)0.000 (3)−0.003 (3)0.030 (3)
N—C161.369 (4)O1—C81.215 (4)
N—C241.379 (4)C13—C91.363 (5)
N—C201.391 (4)C13—H130.9300
C24—C211.380 (4)C12—C91.401 (5)
C24—C171.430 (5)C12—H120.9300
O3—C171.230 (4)C11—C71.378 (5)
O2—C181.215 (4)C11—H110.9300
C23—C191.382 (5)C10—C31.388 (5)
C23—C221.400 (4)C10—H100.9300
C23—C181.492 (5)C9—C11.505 (5)
C22—C111.389 (5)C7—C41.366 (5)
C22—C171.474 (5)C7—H70.9300
C21—C151.399 (4)C6—C51.372 (6)
C21—C181.462 (5)C6—H60.9300
C20—C131.400 (4)C5—C21.358 (6)
C20—C151.404 (5)C5—H50.9300
C19—C41.377 (5)C4—H40.9300
C19—H190.9300C3—C21.376 (6)
C16—C121.338 (5)C3—H30.9300
C16—H160.9300C2—H20.9300
C15—C81.465 (5)C1—H1A0.9600
C14—C61.372 (5)C1—H1B0.9600
C14—C101.375 (5)C1—H1C0.9600
C14—C81.488 (5)
C16—N—C24130.0 (3)C16—C12—C9121.7 (4)
C16—N—C20121.5 (3)C16—C12—H12119.2
C24—N—C20108.5 (3)C9—C12—H12119.2
N—C24—C21107.7 (3)C7—C11—C22120.1 (4)
N—C24—C17126.5 (3)C7—C11—H11120.0
C21—C24—C17125.7 (3)C22—C11—H11120.0
C19—C23—C22119.3 (3)C14—C10—C3120.3 (4)
C19—C23—C18119.2 (3)C14—C10—H10119.9
C22—C23—C18121.4 (3)C3—C10—H10119.9
C11—C22—C23119.2 (3)C13—C9—C12118.5 (4)
C11—C22—C17119.4 (3)C13—C9—C1121.3 (4)
C23—C22—C17121.4 (3)C12—C9—C1120.1 (4)
C24—C21—C15109.4 (3)O1—C8—C15119.1 (4)
C24—C21—C18119.8 (3)O1—C8—C14119.6 (3)
C15—C21—C18130.5 (3)C15—C8—C14121.3 (3)
N—C20—C13117.6 (3)C4—C7—C11120.9 (4)
N—C20—C15108.3 (3)C4—C7—H7119.6
C13—C20—C15134.2 (3)C11—C7—H7119.5
C23—C19—C4120.9 (4)C14—C6—C5120.9 (5)
C23—C19—H19119.5C14—C6—H6119.5
C4—C19—H19119.5C5—C6—H6119.5
O2—C18—C21123.4 (3)C2—C5—C6120.1 (5)
O2—C18—C23120.6 (3)C2—C5—H5120.0
C21—C18—C23116.0 (3)C6—C5—H5120.0
O3—C17—C24123.1 (3)C7—C4—C19119.6 (4)
O3—C17—C22121.8 (3)C7—C4—H4120.2
C24—C17—C22115.1 (3)C19—C4—H4120.2
C12—C16—N119.6 (3)C2—C3—C10119.5 (5)
C12—C16—H16120.2C2—C3—H3120.3
N—C16—H16120.2C10—C3—H3120.3
C21—C15—C20106.1 (3)C5—C2—C3120.2 (5)
C21—C15—C8131.6 (3)C5—C2—H2119.9
C20—C15—C8122.3 (3)C3—C2—H2119.9
C6—C14—C10119.0 (4)C9—C1—H1A109.5
C6—C14—C8119.8 (4)C9—C1—H1B109.5
C10—C14—C8121.2 (3)H1A—C1—H1B109.5
C9—C13—C20121.1 (4)C9—C1—H1C109.5
C9—C13—H13119.4H1A—C1—H1C109.5
C20—C13—H13119.4H1B—C1—H1C109.5
C16—N—C24—C21−178.7 (3)C24—C21—C15—C20−0.1 (4)
C20—N—C24—C21−0.2 (3)C18—C21—C15—C20172.7 (3)
C16—N—C24—C170.7 (5)C24—C21—C15—C8179.2 (3)
C20—N—C24—C17179.2 (3)C18—C21—C15—C8−8.0 (6)
C19—C23—C22—C110.7 (5)N—C20—C15—C210.0 (4)
C18—C23—C22—C11178.3 (3)C13—C20—C15—C21178.8 (4)
C19—C23—C22—C17−177.9 (3)N—C20—C15—C8−179.4 (3)
C18—C23—C22—C17−0.2 (5)C13—C20—C15—C8−0.6 (6)
N—C24—C21—C150.2 (4)N—C20—C13—C90.4 (5)
C17—C24—C21—C15−179.2 (3)C15—C20—C13—C9−178.3 (4)
N—C24—C21—C18−173.5 (3)N—C16—C12—C90.9 (5)
C17—C24—C21—C187.1 (5)C23—C22—C11—C70.7 (5)
C16—N—C20—C13−0.2 (4)C17—C22—C11—C7179.3 (3)
C24—N—C20—C13−178.9 (3)C6—C14—C10—C31.2 (5)
C16—N—C20—C15178.8 (3)C8—C14—C10—C3−176.3 (3)
C24—N—C20—C150.1 (3)C20—C13—C9—C120.0 (5)
C22—C23—C19—C4−2.1 (5)C20—C13—C9—C1177.8 (3)
C18—C23—C19—C4−179.7 (3)C16—C12—C9—C13−0.7 (5)
C24—C21—C18—O2168.7 (3)C16—C12—C9—C1−178.5 (4)
C15—C21—C18—O2−3.5 (6)C21—C15—C8—O1140.5 (4)
C24—C21—C18—C23−9.5 (5)C20—C15—C8—O1−40.3 (5)
C15—C21—C18—C23178.3 (3)C21—C15—C8—C14−43.1 (6)
C19—C23—C18—O25.7 (5)C20—C15—C8—C14136.1 (4)
C22—C23—C18—O2−171.9 (3)C6—C14—C8—O1−27.8 (5)
C19—C23—C18—C21−176.0 (3)C10—C14—C8—O1149.7 (4)
C22—C23—C18—C216.4 (4)C6—C14—C8—C15155.8 (3)
N—C24—C17—O3−0.8 (5)C10—C14—C8—C15−26.7 (5)
C21—C24—C17—O3178.5 (3)C22—C11—C7—C4−0.8 (6)
N—C24—C17—C22−179.9 (3)C10—C14—C6—C51.3 (5)
C21—C24—C17—C22−0.7 (5)C8—C14—C6—C5178.8 (4)
C11—C22—C17—O3−0.5 (5)C14—C6—C5—C2−2.9 (7)
C23—C22—C17—O3178.1 (3)C11—C7—C4—C19−0.5 (6)
C11—C22—C17—C24178.6 (3)C23—C19—C4—C71.9 (6)
C23—C22—C17—C24−2.8 (4)C14—C10—C3—C2−2.1 (6)
C24—N—C16—C12177.9 (3)C6—C5—C2—C32.0 (7)
C20—N—C16—C12−0.5 (5)C10—C3—C2—C50.5 (7)
D—H···AD—HH···AD···AD—H···A
C10—H10···O3i0.932.453.305 (5)152
C16—H16···O30.932.402.960 (5)119
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10⋯O3i0.932.453.305 (5)152

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  The potential importance of swainsonine in therapy for cancers and immunology.

Authors:  K Olden; P Breton; K Grzegorzewski; Y Yasuda; B L Gause; O A Oredipe; S A Newton; S L White
Journal:  Pharmacol Ther       Date:  1991       Impact factor: 12.310

3.  In vitro and in vivo enhancement of ricin-A chain immunotoxin activity by novel indolizine calcium channel blockers: delayed intracellular degradation linked to lipidosis induction.

Authors:  J P Jaffrézou; T Levade; O Thurneyssen; M Chiron; C Bordier; M Attal; P Chatelain; G Laurent
Journal:  Cancer Res       Date:  1992-03-01       Impact factor: 12.701

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  12-(4-Meth-oxy-benzo-yl)-2-methyl-benzo[f]pyrido[1,2-a]indole-6,11-dione.

Authors:  J Josephine Novina; G Vasuki; Yun Liu; Jin-Wei Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-29
  1 in total

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