Literature DB >> 21754843

1-(2-Nitro-benz-yl)-1H-pyrrole-2-carbaldehyde.

Xu Chen, Ying Liu, Deng-Ke Liu, Ping-Bao Wang.   

Abstract

In the title compound, C(12)H(10)N(2)O(3), the five- and six-membered rings form a dihedral angle of 83.96 (6)°. The nitro group is twisted by 5.92 (8)° from the plane of the attached benzene ring. In the crystal, weak inter-molecular C-H⋯O hydrogen bonds link the mol-ecules into columns in the [100] direction, with a short distance of 3.725 (3) Å between the centroids of benzene rings inside these columns.

Entities:  

Year:  2011        PMID: 21754843      PMCID: PMC3120449          DOI: 10.1107/S1600536811018459

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is an inter­mediate in the synthesis of lixivaptan (systematic name N-[3-chloro-4-(5H-pyrrolo-[2,1-c][1,4]benzodiazepin-10(11H)-ylcarbon­yl)phen­yl]-5-fluoro-2-methyl­benzamide), a vasopressin receptor antagonist with high V2 receptor affinity. For preliminary studies of lixivaptan, which is now undergoing Phase III clinical trials, see, for example, Ku et al. (2009 ▶). For the synthesis of the title compound, see: Albright et al. (1998 ▶).

Experimental

Crystal data

C12H10N2O3 M = 230.22 Triclinic, a = 7.2643 (8) Å b = 8.3072 (10) Å c = 9.2570 (12) Å α = 104.10 (2)° β = 96.463 (11)° γ = 96.92 (2)° V = 531.98 (11) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 113 K 0.20 × 0.18 × 0.10 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.979, T max = 0.990 6867 measured reflections 2544 independent reflections 1517 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.095 S = 0.95 2544 reflections 154 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811018459/cv5092sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018459/cv5092Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811018459/cv5092Isup3.cdx Supplementary material file. DOI: 10.1107/S1600536811018459/cv5092Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N2O3Z = 2
Mr = 230.22F(000) = 240
Triclinic, P1Dx = 1.437 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2643 (8) ÅCell parameters from 1889 reflections
b = 8.3072 (10) Åθ = 2.3–28.0°
c = 9.2570 (12) ŵ = 0.11 mm1
α = 104.10 (2)°T = 113 K
β = 96.463 (11)°Prism, colourless
γ = 96.92 (2)°0.20 × 0.18 × 0.10 mm
V = 531.98 (11) Å3
Rigaku Saturn CCD area-detector diffractometer2544 independent reflections
Radiation source: rotating anode1517 reflections with I > 2σ(I)
multilayerRint = 0.040
Detector resolution: 14.22 pixels mm-1θmax = 28.0°, θmin = 2.3°
ω and φ scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)k = −10→10
Tmin = 0.979, Tmax = 0.990l = −12→12
6867 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H-atom parameters constrained
S = 0.95w = 1/[σ2(Fo2) + (0.0455P)2] where P = (Fo2 + 2Fc2)/3
2544 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.73782 (17)0.83214 (12)0.55982 (12)0.0507 (4)
O20.80539 (16)0.77297 (12)0.33569 (12)0.0402 (3)
O30.39124 (13)0.35491 (12)0.08896 (11)0.0281 (2)
N10.76728 (15)0.73149 (14)0.44833 (13)0.0255 (3)
N20.78470 (15)0.30999 (13)0.04974 (12)0.0206 (3)
C10.75954 (17)0.55405 (15)0.45094 (15)0.0202 (3)
C20.73377 (18)0.52045 (17)0.58762 (15)0.0258 (3)
H20.72090.60850.67140.031*
C30.72705 (19)0.35811 (18)0.60071 (16)0.0291 (3)
H30.70880.33340.69350.035*
C40.74712 (19)0.23132 (17)0.47785 (16)0.0284 (3)
H40.74490.11960.48690.034*
C50.77038 (18)0.26669 (16)0.34158 (16)0.0244 (3)
H50.78270.17770.25830.029*
C60.77633 (17)0.42904 (16)0.32299 (14)0.0198 (3)
C70.79970 (19)0.46275 (15)0.17131 (14)0.0220 (3)
H7A0.70280.52930.14510.026*
H7B0.92380.53110.18000.026*
C80.93194 (19)0.24383 (17)−0.00619 (15)0.0251 (3)
H81.06050.28680.03000.030*
C90.86490 (19)0.10454 (17)−0.12366 (15)0.0275 (3)
H90.93820.0351−0.18290.033*
C100.66954 (19)0.08388 (15)−0.14002 (15)0.0237 (3)
H100.5857−0.0025−0.21240.028*
C110.61976 (18)0.21166 (15)−0.03203 (14)0.0200 (3)
C120.43411 (19)0.24082 (17)−0.00666 (15)0.0226 (3)
H120.33350.1635−0.07080.027*
U11U22U33U12U13U23
O10.0839 (10)0.0285 (6)0.0404 (7)0.0147 (6)0.0260 (7)−0.0002 (5)
O20.0676 (8)0.0260 (6)0.0292 (6)0.0057 (5)0.0086 (6)0.0110 (5)
O30.0241 (5)0.0363 (6)0.0267 (6)0.0097 (4)0.0074 (4)0.0094 (5)
N10.0252 (6)0.0239 (6)0.0257 (7)0.0043 (5)0.0009 (5)0.0042 (5)
N20.0180 (6)0.0239 (6)0.0197 (6)0.0037 (5)0.0028 (5)0.0054 (5)
C10.0153 (6)0.0201 (7)0.0250 (8)0.0017 (5)0.0001 (5)0.0072 (6)
C20.0202 (7)0.0340 (8)0.0216 (8)0.0021 (6)0.0024 (6)0.0056 (6)
C30.0245 (8)0.0399 (9)0.0249 (8)0.0001 (7)0.0004 (6)0.0160 (7)
C40.0248 (8)0.0274 (7)0.0355 (9)−0.0001 (6)−0.0011 (6)0.0172 (7)
C50.0226 (7)0.0222 (7)0.0273 (8)0.0024 (6)0.0001 (6)0.0068 (6)
C60.0139 (6)0.0229 (7)0.0222 (7)0.0020 (5)0.0002 (5)0.0065 (6)
C70.0236 (7)0.0212 (7)0.0203 (7)0.0016 (6)0.0019 (6)0.0051 (6)
C80.0178 (7)0.0332 (8)0.0273 (8)0.0065 (6)0.0060 (6)0.0114 (6)
C90.0295 (8)0.0315 (8)0.0260 (8)0.0123 (6)0.0098 (6)0.0095 (6)
C100.0270 (7)0.0225 (7)0.0210 (7)0.0017 (6)0.0028 (6)0.0058 (6)
C110.0192 (7)0.0234 (7)0.0183 (7)0.0023 (5)0.0020 (5)0.0082 (5)
C120.0205 (7)0.0278 (7)0.0215 (7)0.0024 (6)0.0014 (6)0.0116 (6)
O1—N11.2175 (14)C4—H40.9500
O2—N11.2247 (14)C5—C61.3968 (18)
O3—C121.2260 (15)C5—H50.9500
N1—C11.4745 (16)C6—C71.5207 (17)
N2—C81.3571 (16)C7—H7A0.9900
N2—C111.3909 (16)C7—H7B0.9900
N2—C71.4602 (15)C8—C91.3750 (19)
C1—C21.3881 (17)C8—H80.9500
C1—C61.4000 (18)C9—C101.3952 (18)
C2—C31.3787 (19)C9—H90.9500
C2—H20.9500C10—C111.3834 (17)
C3—C41.3837 (19)C10—H100.9500
C3—H30.9500C11—C121.4335 (17)
C4—C51.3867 (18)C12—H120.9500
O1—N1—O2122.35 (12)C1—C6—C7123.58 (11)
O1—N1—C1118.45 (12)N2—C7—C6113.43 (10)
O2—N1—C1119.20 (11)N2—C7—H7A108.9
C8—N2—C11108.47 (11)C6—C7—H7A108.9
C8—N2—C7125.06 (11)N2—C7—H7B108.9
C11—N2—C7126.43 (10)C6—C7—H7B108.9
C2—C1—C6122.84 (12)H7A—C7—H7B107.7
C2—C1—N1115.52 (12)N2—C8—C9108.95 (12)
C6—C1—N1121.64 (12)N2—C8—H8125.5
C3—C2—C1119.42 (13)C9—C8—H8125.5
C3—C2—H2120.3C8—C9—C10107.48 (12)
C1—C2—H2120.3C8—C9—H9126.3
C2—C3—C4119.60 (13)C10—C9—H9126.3
C2—C3—H3120.2C11—C10—C9107.74 (12)
C4—C3—H3120.2C11—C10—H10126.1
C3—C4—C5120.23 (13)C9—C10—H10126.1
C3—C4—H4119.9C10—C11—N2107.36 (11)
C5—C4—H4119.9C10—C11—C12127.39 (13)
C4—C5—C6122.05 (13)N2—C11—C12125.25 (12)
C4—C5—H5119.0O3—C12—C11126.96 (13)
C6—C5—H5119.0O3—C12—H12116.5
C5—C6—C1115.84 (12)C11—C12—H12116.5
C5—C6—C7120.58 (12)
O1—N1—C1—C2−5.10 (18)C11—N2—C7—C682.11 (15)
O2—N1—C1—C2173.91 (12)C5—C6—C7—N29.06 (17)
O1—N1—C1—C6174.59 (12)C1—C6—C7—N2−170.91 (11)
O2—N1—C1—C6−6.41 (19)C11—N2—C8—C90.35 (14)
C6—C1—C2—C31.07 (19)C7—N2—C8—C9−177.37 (12)
N1—C1—C2—C3−179.24 (11)N2—C8—C9—C10−0.30 (15)
C1—C2—C3—C40.36 (19)C8—C9—C10—C110.14 (15)
C2—C3—C4—C5−1.2 (2)C9—C10—C11—N20.08 (14)
C3—C4—C5—C60.6 (2)C9—C10—C11—C12179.91 (12)
C4—C5—C6—C10.72 (19)C8—N2—C11—C10−0.26 (14)
C4—C5—C6—C7−179.26 (12)C7—N2—C11—C10177.42 (11)
C2—C1—C6—C5−1.58 (19)C8—N2—C11—C12179.89 (12)
N1—C1—C6—C5178.76 (11)C7—N2—C11—C12−2.4 (2)
C2—C1—C6—C7178.40 (12)C10—C11—C12—O3−179.65 (12)
N1—C1—C6—C7−1.26 (19)N2—C11—C12—O30.2 (2)
C8—N2—C7—C6−100.58 (14)
D—H···AD—HH···AD···AD—H···A
C2—H2···O3i0.952.413.1919 (17)139
C8—H8···O3ii0.952.373.3107 (17)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O3i0.952.413.1919 (17)139
C8—H8⋯O3ii0.952.373.3107 (17)170

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5-Fluoro-2-methyl-N-[4-(5H-pyrrolo[2,1-c]-[1, 4]benzodiazepin-10(11H)-ylcarbonyl)-3-chlorophenyl]benzamide (VPA-985): an orally active arginine vasopressin antagonist with selectivity for V2 receptors.

Authors:  J D Albright; M F Reich; E G Delos Santos; J P Dusza; F W Sum; A M Venkatesan; J Coupet; P S Chan; X Ru; H Mazandarani; T Bailey
Journal:  J Med Chem       Date:  1998-07-02       Impact factor: 7.446

Review 3.  Lixivaptan: a novel vasopressin receptor antagonist.

Authors:  Elaine Ku; Niloofar Nobakht; Vito M Campese
Journal:  Expert Opin Investig Drugs       Date:  2009-05       Impact factor: 6.206

  3 in total

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