Literature DB >> 21754775

5-Bromo-3-cyclo-pentyl-sulfinyl-2-methyl-1-benzofuran.

Pil Ja Seo, Hong Dae Choi, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(14)H(15)BrO(2)S, the cyclo-pentyl ring adopts an envelope conformation. In the cyclo-pentyl ring, two adjacent C atoms are disordered over two sets of sites with site-occupancy factors of 0.618 (11) and 0.382 (11). In the crystal, mol-ecules are linked through weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21754775      PMCID: PMC3120517          DOI: 10.1107/S1600536811017120

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of benzofuran compounds, see: Aslam et al. (2009 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For structural studies of related 5-bromo-3-cyclo­hexyl­sulfinyl-2-methyl-1-benzofuran derivatives, see: Choi et al. (2011 ▶).

Experimental

Crystal data

C14H15BrO2S M = 327.23 Monoclinic, a = 9.4166 (6) Å b = 9.5369 (7) Å c = 15.1662 (11) Å β = 100.033 (4)° V = 1341.17 (16) Å3 Z = 4 Mo Kα radiation μ = 3.21 mm−1 T = 173 K 0.31 × 0.24 × 0.13 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.531, T max = 0.746 12376 measured reflections 3098 independent reflections 2567 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.094 S = 1.06 3098 reflections 182 parameters 83 restraints H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −0.64 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811017120/qk2009sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017120/qk2009Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811017120/qk2009Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H15BrO2SF(000) = 664
Mr = 327.23Dx = 1.621 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5053 reflections
a = 9.4166 (6) Åθ = 2.5–27.4°
b = 9.5369 (7) ŵ = 3.21 mm1
c = 15.1662 (11) ÅT = 173 K
β = 100.033 (4)°Block, colourless
V = 1341.17 (16) Å30.31 × 0.24 × 0.13 mm
Z = 4
Bruker SMART APEXII CCD diffractometer3098 independent reflections
Radiation source: rotating anode2567 reflections with I > 2σ(I)
graphite multilayerRint = 0.035
Detector resolution: 10.0 pixels mm-1θmax = 27.6°, θmin = 2.2°
φ and ω scansh = −12→12
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −11→12
Tmin = 0.531, Tmax = 0.746l = −19→18
12376 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: difference Fourier map
wR(F2) = 0.094H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0474P)2 + 0.9434P] where P = (Fo2 + 2Fc2)/3
3098 reflections(Δ/σ)max < 0.001
182 parametersΔρmax = 0.54 e Å3
83 restraintsΔρmin = −0.64 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Br10.23192 (3)0.05192 (3)0.013362 (19)0.03823 (12)
S10.16243 (6)0.69180 (7)0.10017 (4)0.02871 (16)
O10.56646 (18)0.5680 (2)0.13602 (12)0.0323 (4)
O20.0936 (2)0.6788 (3)0.00457 (13)0.0467 (6)
C10.3266 (2)0.5992 (3)0.11348 (16)0.0255 (5)
C20.3530 (2)0.4544 (3)0.09134 (15)0.0243 (5)
C30.2690 (3)0.3376 (3)0.06233 (15)0.0250 (5)
H30.16670.34240.05030.030*
C40.3415 (3)0.2147 (3)0.05198 (16)0.0290 (5)
C50.4922 (3)0.2047 (3)0.06733 (18)0.0340 (6)
H50.53720.11760.05930.041*
C60.5749 (3)0.3209 (3)0.09404 (18)0.0348 (6)
H60.67720.31720.10330.042*
C70.5034 (3)0.4422 (3)0.10677 (17)0.0283 (5)
C80.4561 (3)0.6612 (3)0.13951 (16)0.0292 (5)
C90.5022 (3)0.8028 (3)0.17033 (19)0.0376 (6)
H9A0.60780.80690.18330.056*
H9B0.46370.82500.22470.056*
H9C0.46590.87110.12350.056*
C100.0670 (3)0.5783 (3)0.16509 (16)0.0253 (5)
H100.06270.48070.14060.030*
C11−0.0865 (3)0.6359 (4)0.16324 (19)0.0395 (7)
H11A−0.09230.73570.14510.047*0.618 (11)
H11B−0.15780.58180.12090.047*0.618 (11)
H11C−0.16010.56180.14720.047*0.382 (11)
H11D−0.10740.71430.12020.047*0.382 (11)
C12A−0.1140 (5)0.6192 (9)0.2584 (3)0.0431 (17)0.618 (11)
H12A−0.13880.52130.27130.052*0.618 (11)
H12B−0.19090.68290.27110.052*0.618 (11)
C13A0.0344 (5)0.6615 (8)0.3103 (4)0.0475 (18)0.618 (11)
H13A0.05020.76370.30600.057*0.618 (11)
H13B0.04460.63490.37420.057*0.618 (11)
C12B−0.0817 (14)0.6861 (9)0.2588 (3)0.044 (3)0.382 (11)
H12C−0.17950.68540.27440.053*0.382 (11)
H12D−0.04260.78260.26630.053*0.382 (11)
C13B0.0173 (8)0.5832 (11)0.3181 (6)0.040 (2)0.382 (11)
H13C0.04950.62030.37930.049*0.382 (11)
H13D−0.02830.49030.32130.049*0.382 (11)
C140.1399 (3)0.5790 (3)0.26381 (18)0.0381 (7)
H14A0.15300.48230.28770.046*0.618 (11)
H14B0.23510.62590.27150.046*0.618 (11)
H14C0.19940.49370.27840.046*0.382 (11)
H14D0.20260.66240.27680.046*0.382 (11)
U11U22U33U12U13U23
Br10.04047 (18)0.03448 (17)0.04127 (18)0.00614 (12)0.01135 (13)−0.00446 (12)
S10.0221 (3)0.0325 (3)0.0328 (3)0.0048 (2)0.0086 (2)0.0075 (3)
O10.0183 (8)0.0479 (12)0.0312 (10)0.0003 (8)0.0054 (7)0.0023 (8)
O20.0290 (10)0.0792 (16)0.0320 (10)0.0134 (10)0.0054 (8)0.0183 (11)
C10.0188 (11)0.0333 (13)0.0256 (12)0.0028 (10)0.0073 (9)0.0053 (10)
C20.0192 (11)0.0359 (13)0.0187 (11)0.0060 (9)0.0056 (9)0.0062 (9)
C30.0208 (11)0.0350 (13)0.0202 (11)0.0050 (10)0.0062 (9)0.0037 (10)
C40.0308 (13)0.0357 (14)0.0218 (12)0.0059 (11)0.0084 (10)0.0018 (10)
C50.0314 (13)0.0419 (15)0.0310 (13)0.0167 (12)0.0118 (11)0.0057 (12)
C60.0201 (11)0.0531 (17)0.0328 (14)0.0121 (11)0.0090 (10)0.0069 (13)
C70.0207 (11)0.0419 (15)0.0232 (12)0.0026 (10)0.0064 (9)0.0055 (11)
C80.0242 (12)0.0405 (14)0.0238 (12)−0.0006 (11)0.0060 (10)0.0036 (11)
C90.0325 (14)0.0440 (16)0.0367 (15)−0.0079 (12)0.0068 (12)−0.0013 (13)
C100.0208 (11)0.0301 (13)0.0266 (12)−0.0003 (9)0.0081 (9)−0.0013 (10)
C110.0199 (12)0.068 (2)0.0320 (14)0.0022 (13)0.0071 (11)0.0020 (14)
C12A0.028 (2)0.071 (5)0.033 (3)0.011 (3)0.0120 (19)0.005 (3)
C13A0.037 (3)0.081 (5)0.025 (2)0.008 (3)0.006 (2)−0.009 (3)
C12B0.054 (6)0.049 (5)0.035 (4)0.022 (4)0.027 (4)0.006 (3)
C13B0.044 (4)0.048 (5)0.034 (4)0.004 (4)0.019 (3)0.007 (4)
C140.0281 (13)0.0590 (19)0.0271 (13)0.0070 (13)0.0049 (11)0.0073 (13)
Br1—C41.900 (3)C10—H101.0000
S1—O21.487 (2)C11—C12A1.519 (4)
S1—C11.761 (2)C11—C12B1.519 (4)
S1—C101.805 (2)C11—H11A0.9900
O1—C81.375 (3)C11—H11B0.9900
O1—C71.377 (3)C11—H11C0.9900
C1—C81.351 (4)C11—H11D0.9900
C1—C21.453 (4)C12A—C13A1.533 (6)
C2—C31.393 (4)C12A—H12A0.9900
C2—C71.399 (3)C12A—H12B0.9900
C3—C41.379 (3)C13A—C141.532 (4)
C3—H30.9500C13A—H13A0.9900
C4—C51.400 (4)C13A—H13B0.9900
C5—C61.374 (4)C12B—C13B1.533 (6)
C5—H50.9500C12B—H12C0.9900
C6—C71.369 (4)C12B—H12D0.9900
C6—H60.9500C13B—C141.531 (4)
C8—C91.471 (4)C13B—H13C0.9900
C9—H9A0.9800C13B—H13D0.9900
C9—H9B0.9800C14—H14A0.9900
C9—H9C0.9800C14—H14B0.9900
C10—C141.535 (4)C14—H14C0.9900
C10—C111.541 (3)C14—H14D0.9900
O2—S1—C1107.12 (12)C10—C11—H11C111.4
O2—S1—C10107.95 (12)H11A—C11—H11C128.0
C1—S1—C1098.47 (11)C12A—C11—H11D131.3
C8—O1—C7106.76 (19)C12B—C11—H11D111.1
C8—C1—C2107.5 (2)C10—C11—H11D111.0
C8—C1—S1122.9 (2)H11A—C11—H11D25.2
C2—C1—S1129.26 (19)H11B—C11—H11D86.0
C3—C2—C7119.3 (2)H11C—C11—H11D109.1
C3—C2—C1136.2 (2)C11—C12A—C13A99.7 (4)
C7—C2—C1104.5 (2)C11—C12A—H12A111.8
C4—C3—C2116.7 (2)C13A—C12A—H12A111.8
C4—C3—H3121.6C11—C12A—H12B111.8
C2—C3—H3121.6C13A—C12A—H12B111.8
C3—C4—C5123.1 (3)H12A—C12A—H12B109.6
C3—C4—Br1118.46 (19)C14—C13A—C12A103.6 (4)
C5—C4—Br1118.4 (2)C14—C13A—H13A111.0
C6—C5—C4120.0 (2)C12A—C13A—H13A111.0
C6—C5—H5120.0C14—C13A—H13B111.0
C4—C5—H5120.0C12A—C13A—H13B111.0
C7—C6—C5117.1 (2)H13A—C13A—H13B109.0
C7—C6—H6121.5C11—C12B—C13B105.8 (5)
C5—C6—H6121.5C11—C12B—H12C110.6
C6—C7—O1125.9 (2)C13B—C12B—H12C110.6
C6—C7—C2123.7 (3)C11—C12B—H12D110.6
O1—C7—C2110.4 (2)C13B—C12B—H12D110.6
C1—C8—O1110.9 (2)H12C—C12B—H12D108.7
C1—C8—C9134.2 (2)C14—C13B—C12B98.0 (5)
O1—C8—C9115.0 (2)C14—C13B—H13C112.2
C8—C9—H9A109.5C12B—C13B—H13C112.2
C8—C9—H9B109.5C14—C13B—H13D112.2
H9A—C9—H9B109.5C12B—C13B—H13D112.2
C8—C9—H9C109.5H13C—C13B—H13D109.8
H9A—C9—H9C109.5C13B—C14—C10105.9 (4)
H9B—C9—H9C109.5C13A—C14—C10103.6 (3)
C14—C10—C11106.0 (2)C13B—C14—H14A83.4
C14—C10—S1110.42 (18)C13A—C14—H14A111.0
C11—C10—S1109.34 (19)C10—C14—H14A111.0
C14—C10—H10110.3C13B—C14—H14B132.5
C11—C10—H10110.3C13A—C14—H14B111.0
S1—C10—H10110.3C10—C14—H14B111.0
C12A—C11—C10105.1 (3)H14A—C14—H14B109.0
C12B—C11—C10102.9 (5)C13B—C14—H14C110.6
C12A—C11—H11A110.7C13A—C14—H14C134.9
C12B—C11—H11A87.3C10—C14—H14C110.8
C10—C11—H11A110.7H14B—C14—H14C83.1
C12A—C11—H11B110.7C13B—C14—H14D110.5
C12B—C11—H11B133.5C13A—C14—H14D84.7
C10—C11—H11B110.7C10—C14—H14D110.4
H11A—C11—H11B108.8H14A—C14—H14D130.1
C12A—C11—H11C86.0H14C—C14—H14D108.7
C12B—C11—H11C111.2
O2—S1—C1—C8118.2 (2)S1—C1—C8—C96.3 (4)
C10—S1—C1—C8−129.9 (2)C7—O1—C8—C1−0.2 (3)
O2—S1—C1—C2−54.7 (2)C7—O1—C8—C9179.5 (2)
C10—S1—C1—C257.2 (2)O2—S1—C10—C14175.88 (18)
C8—C1—C2—C3178.9 (3)C1—S1—C10—C1464.7 (2)
S1—C1—C2—C3−7.3 (4)O2—S1—C10—C11−67.9 (2)
C8—C1—C2—C7−0.1 (3)C1—S1—C10—C11−179.06 (19)
S1—C1—C2—C7173.68 (19)C14—C10—C11—C12A−19.1 (4)
C7—C2—C3—C41.0 (3)S1—C10—C11—C12A−138.2 (4)
C1—C2—C3—C4−177.9 (3)C14—C10—C11—C12B8.5 (5)
C2—C3—C4—C5−1.4 (3)S1—C10—C11—C12B−110.5 (5)
C2—C3—C4—Br1179.56 (17)C12B—C11—C12A—C13A−48.7 (8)
C3—C4—C5—C60.0 (4)C10—C11—C12A—C13A40.2 (7)
Br1—C4—C5—C6179.0 (2)C11—C12A—C13A—C14−46.9 (8)
C4—C5—C6—C71.7 (4)C12A—C11—C12B—C13B63.3 (8)
C5—C6—C7—O1177.8 (2)C10—C11—C12B—C13B−34.7 (10)
C5—C6—C7—C2−2.2 (4)C11—C12B—C13B—C1446.2 (11)
C8—O1—C7—C6−179.9 (2)C12B—C13B—C14—C13A49.8 (6)
C8—O1—C7—C20.1 (3)C12B—C13B—C14—C10−39.8 (9)
C3—C2—C7—C60.8 (4)C12A—C13A—C14—C13B−62.9 (8)
C1—C2—C7—C6180.0 (2)C12A—C13A—C14—C1035.4 (7)
C3—C2—C7—O1−179.2 (2)C11—C10—C14—C13B20.3 (5)
C1—C2—C7—O10.0 (3)S1—C10—C14—C13B138.6 (5)
C2—C1—C8—O10.1 (3)C11—C10—C14—C13A−10.0 (4)
S1—C1—C8—O1−174.09 (16)S1—C10—C14—C13A108.3 (4)
C2—C1—C8—C9−179.5 (3)
D—H···AD—HH···AD···AD—H···A
C3—H3···O2i0.952.463.392 (3)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O2i0.952.463.392 (3)169

Symmetry code: (i) .

  8 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

5.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

6.  Antibacterial and antifungal activity of cicerfuran and related 2-arylbenzofurans and stilbenes.

Authors:  Shazia N Aslam; Philip C Stevenson; Tetsuo Kokubun; David R Hall
Journal:  Microbiol Res       Date:  2007-04-05       Impact factor: 5.415

7.  5-Bromo-3-cyclo-hexyl-sulfinyl-2-methyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-29

8.  5-Bromo-3-cyclo-hexyl-sulfinyl-2,7-dimethyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-07
  8 in total
  3 in total

1.  3-Cyclo-pentyl-sulfonyl-5-fluoro-2-methyl-1-benzofuran.

Authors:  Pil Ja Seo; Hong Dae Choi; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-18

2.  5-Chloro-3-cyclo-pentyl-sulfinyl-2-methyl-1-benzofuran.

Authors:  Pil Ja Seo; Hong Dae Choi; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-04

3.  5-Chloro-3-cyclo-pentyl-sulfonyl-2-methyl-1-benzofuran.

Authors:  Pil Ja Seo; Hong Dae Choi; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30
  3 in total

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