Literature DB >> 21754772

tert-Butyl N-{2-[bis-(prop-2-yn-1-yl)amino]-phen-yl}carbamate.

Manavendra K Singh, Alka Agarwal, Charu Mahawar, Satish K Awasthi.   

Abstract

In the crystal of the title compound, C(17)H(20)N(2)O(2), the molecules are linked by C-H⋯O interactions. Intra-molecular C-H⋯O and N-H⋯N hydrogen bonds also occur.

Entities:  

Year:  2011        PMID: 21754772      PMCID: PMC3120597          DOI: 10.1107/S1600536811016862

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of alkyne scaffolds in biology, medicinal and materials chemistry, see: Diederich et al. (2005 ▶); Stang & Diederich (1995 ▶); Lam et al. (1988 ▶); Patai (1994 ▶). For background to click chemistry, which involves 1,3-dipolar cyclo­addition of an alkyne with an azide and is an efficient and highly versatile tool that has allowed the preparation of a variety of macromolecule conjugates such as sugars, peptides or proteins and DNA, see: Rostovtsev et al. (2002 ▶). For the synthesis, see: Lilienkampf et al. (2009 ▶). For inter­molecular inter­actions, see: Steiner & Desiraju (1998 ▶). For intra­molecular C—H⋯O hydrogen bonds, see: Smith et al. (1993 ▶).

Experimental

Crystal data

C17H20N2O2 M = 284.35 Monoclinic, a = 19.1936 (12) Å b = 8.7181 (4) Å c = 19.7619 (9) Å β = 99.513 (5)° V = 3261.3 (3) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.40 × 0.39 × 0.38 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.953, T max = 1.000 6969 measured reflections 4389 independent reflections 2427 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.156 S = 0.96 4389 reflections 194 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811016862/zj2008sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016862/zj2008Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811016862/zj2008Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H20N2O2F(000) = 1216.0
Mr = 284.35Dx = 1.158 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4389 reflections
a = 19.1936 (12) Åθ = 3.2–29.0°
b = 8.7181 (4) ŵ = 0.08 mm1
c = 19.7619 (9) ÅT = 293 K
β = 99.513 (5)°Block, colourless
V = 3261.3 (3) Å30.40 × 0.39 × 0.38 mm
Z = 8
Oxford Diffraction Xcalibur Eos diffractometer4389 independent reflections
Radiation source: fine-focus sealed tube2427 reflections with I > 2σ(I)
graphiteRint = 0.019
ω scansθmax = 29.1°, θmin = 3.2°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)h = −24→7
Tmin = 0.953, Tmax = 1.000k = −10→10
6969 measured reflectionsl = −23→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.156H atoms treated by a mixture of independent and constrained refinement
S = 0.96w = 1/[σ2(Fo2) + (0.0754P)2 + 1.325P] where P = (Fo2 + 2Fc2)/3
4389 reflections(Δ/σ)max = 0.05
194 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
HN10.1292 (11)0.706 (2)0.4601 (9)0.038 (5)*
N10.13858 (9)0.78587 (19)0.47962 (8)0.0397 (4)
O20.05794 (7)0.71231 (15)0.53892 (6)0.0505 (4)
N20.17096 (8)0.68525 (17)0.35922 (7)0.0399 (4)
C10.18983 (9)0.8707 (2)0.45262 (8)0.0362 (4)
O10.11848 (8)0.93110 (16)0.57014 (6)0.0548 (4)
C130.10630 (10)0.8202 (2)0.53354 (8)0.0380 (4)
C60.20658 (10)0.8197 (2)0.38966 (8)0.0383 (4)
C20.22421 (11)0.9975 (2)0.48421 (10)0.0454 (5)
H20.21301.03240.52560.055*
C110.19018 (12)0.4288 (3)0.31791 (9)0.0510 (5)
C50.25792 (11)0.8980 (2)0.36113 (10)0.0507 (5)
H50.26910.86550.31940.061*
C100.21577 (11)0.5866 (2)0.32379 (9)0.0476 (5)
H10A0.21680.62740.27830.057*
H10B0.26370.58790.34890.057*
C80.10589 (12)0.7963 (3)0.25187 (10)0.0586 (6)
C30.27519 (12)1.0729 (2)0.45480 (11)0.0544 (5)
H30.29801.15810.47650.065*
C70.10173 (11)0.7167 (2)0.31671 (9)0.0491 (5)
H7A0.07710.62020.30640.059*
H7B0.07390.77860.34310.059*
C140.00843 (11)0.7249 (2)0.58831 (9)0.0484 (5)
C40.29225 (12)1.0225 (2)0.39370 (12)0.0576 (6)
H40.32701.07270.37440.069*
C120.17318 (14)0.2999 (3)0.31334 (12)0.0681 (7)
H120.15970.19740.30970.082*
C15−0.03735 (16)0.5849 (3)0.57144 (14)0.0852 (9)
H15A−0.06290.59350.52550.128*
H15B−0.07010.57720.60310.128*
H15C−0.00810.49490.57500.128*
C90.11141 (16)0.8551 (4)0.20009 (13)0.0838 (8)
H90.11580.90200.15870.101*
C160.04878 (15)0.7145 (4)0.66033 (11)0.0833 (9)
H16A0.07500.62030.66560.125*
H16B0.01630.71690.69240.125*
H16C0.08080.79960.66890.125*
C17−0.03353 (15)0.8709 (3)0.57635 (15)0.0854 (9)
H17A−0.05850.87270.53000.128*
H17B−0.00210.95720.58370.128*
H17C−0.06680.87590.60760.128*
U11U22U33U12U13U23
N10.0456 (10)0.0393 (9)0.0381 (8)−0.0030 (7)0.0187 (7)−0.0042 (7)
O20.0517 (9)0.0599 (8)0.0465 (7)−0.0109 (7)0.0271 (6)−0.0086 (6)
N20.0396 (9)0.0496 (9)0.0328 (7)0.0035 (7)0.0129 (6)0.0014 (6)
C10.0340 (10)0.0386 (9)0.0379 (9)0.0065 (8)0.0118 (7)0.0075 (7)
O10.0565 (9)0.0634 (9)0.0486 (7)−0.0082 (7)0.0212 (6)−0.0186 (7)
C130.0358 (10)0.0462 (10)0.0332 (8)0.0030 (8)0.0094 (7)0.0006 (7)
C60.0362 (10)0.0424 (10)0.0386 (9)0.0062 (8)0.0126 (7)0.0083 (7)
C20.0431 (11)0.0422 (10)0.0530 (11)0.0036 (9)0.0133 (8)−0.0008 (8)
C110.0530 (13)0.0616 (14)0.0412 (10)0.0101 (11)0.0160 (9)−0.0043 (9)
C50.0506 (13)0.0553 (12)0.0518 (11)0.0017 (10)0.0250 (9)0.0092 (9)
C100.0457 (12)0.0610 (13)0.0391 (9)0.0088 (10)0.0155 (8)−0.0007 (8)
C80.0522 (14)0.0731 (15)0.0499 (12)0.0075 (12)0.0066 (9)0.0173 (10)
C30.0455 (13)0.0434 (11)0.0756 (14)−0.0007 (10)0.0141 (10)0.0011 (10)
C70.0418 (12)0.0638 (13)0.0432 (10)0.0022 (10)0.0113 (8)0.0076 (9)
C140.0456 (12)0.0621 (12)0.0435 (10)0.0018 (10)0.0247 (8)0.0024 (9)
C40.0466 (13)0.0529 (12)0.0794 (14)−0.0020 (10)0.0287 (11)0.0122 (11)
C120.0762 (18)0.0616 (15)0.0727 (15)0.0037 (13)0.0307 (13)−0.0087 (11)
C150.081 (2)0.095 (2)0.0936 (18)−0.0271 (16)0.0533 (15)−0.0110 (15)
C90.081 (2)0.108 (2)0.0634 (15)0.0147 (17)0.0150 (13)0.0378 (15)
C160.086 (2)0.121 (2)0.0472 (13)0.0107 (18)0.0253 (12)0.0175 (13)
C170.0630 (17)0.093 (2)0.110 (2)0.0268 (15)0.0427 (15)0.0300 (16)
N1—C131.352 (2)C8—C71.471 (3)
N1—C11.404 (2)C3—C41.374 (3)
N1—HN10.801 (19)C3—H30.9300
O2—C131.338 (2)C7—H7A0.9700
O2—C141.475 (2)C7—H7B0.9700
N2—C61.438 (2)C14—C171.504 (3)
N2—C71.476 (2)C14—C161.507 (3)
N2—C101.472 (2)C14—C151.509 (3)
C1—C21.382 (3)C4—H40.9300
C1—C61.407 (2)C12—H120.9300
O1—C131.207 (2)C15—H15A0.9600
C6—C51.392 (3)C15—H15B0.9600
C2—C31.384 (3)C15—H15C0.9600
C2—H20.9300C9—H90.9300
C11—C121.170 (3)C16—H16A0.9600
C11—C101.459 (3)C16—H16B0.9600
C5—C41.374 (3)C16—H16C0.9600
C5—H50.9300C17—H17A0.9600
C10—H10A0.9700C17—H17B0.9600
C10—H10B0.9700C17—H17C0.9600
C8—C91.164 (3)
C13—N1—C1128.60 (16)C8—C7—H7A108.7
C13—N1—HN1118.4 (14)N2—C7—H7A108.7
C1—N1—HN1113.0 (14)C8—C7—H7B108.7
C13—O2—C14122.13 (14)N2—C7—H7B108.7
C6—N2—C7114.07 (15)H7A—C7—H7B107.6
C6—N2—C10113.60 (15)O2—C14—C17110.24 (16)
C7—N2—C10112.31 (14)O2—C14—C16109.50 (18)
C2—C1—C6119.35 (16)C17—C14—C16112.2 (2)
C2—C1—N1124.15 (16)O2—C14—C15102.07 (16)
C6—C1—N1116.50 (16)C17—C14—C15111.9 (2)
O1—C13—O2125.71 (16)C16—C14—C15110.5 (2)
O1—C13—N1125.54 (17)C5—C4—C3119.92 (19)
O2—C13—N1108.74 (15)C5—C4—H4120.0
C5—C6—C1118.91 (18)C3—C4—H4120.0
C5—C6—N2123.34 (16)C11—C12—H12180.0
C1—C6—N2117.72 (15)C14—C15—H15A109.5
C3—C2—C1120.53 (18)C14—C15—H15B109.5
C3—C2—H2119.7H15A—C15—H15B109.5
C1—C2—H2119.7C14—C15—H15C109.5
C12—C11—C10176.5 (2)H15A—C15—H15C109.5
C4—C5—C6120.96 (19)H15B—C15—H15C109.5
C4—C5—H5119.5C8—C9—H9180.0
C6—C5—H5119.5C14—C16—H16A109.5
C11—C10—N2111.90 (16)C14—C16—H16B109.5
C11—C10—H10A109.2H16A—C16—H16B109.5
N2—C10—H10A109.2C14—C16—H16C109.5
C11—C10—H10B109.2H16A—C16—H16C109.5
N2—C10—H10B109.2H16B—C16—H16C109.5
H10A—C10—H10B107.9C14—C17—H17A109.5
C9—C8—C7177.1 (3)C14—C17—H17B109.5
C4—C3—C2120.3 (2)H17A—C17—H17B109.5
C4—C3—H3119.8C14—C17—H17C109.5
C2—C3—H3119.8H17A—C17—H17C109.5
C8—C7—N2114.21 (17)H17B—C17—H17C109.5
C13—N1—C1—C210.1 (3)N1—C1—C2—C3178.67 (18)
C13—N1—C1—C6−170.50 (17)C1—C6—C5—C40.4 (3)
C14—O2—C13—O15.5 (3)N2—C6—C5—C4−177.51 (18)
C14—O2—C13—N1−173.54 (16)C12—C11—C10—N2−149 (4)
C1—N1—C13—O1−2.8 (3)C6—N2—C10—C11157.11 (15)
C1—N1—C13—O2176.26 (16)C7—N2—C10—C11−71.6 (2)
C2—C1—C6—C50.5 (3)C1—C2—C3—C40.0 (3)
N1—C1—C6—C5−178.92 (16)C9—C8—C7—N246 (6)
C2—C1—C6—N2178.52 (16)C6—N2—C7—C870.5 (2)
N1—C1—C6—N2−0.9 (2)C10—N2—C7—C8−60.6 (2)
C7—N2—C6—C5−96.4 (2)C13—O2—C14—C1757.2 (3)
C10—N2—C6—C534.0 (2)C13—O2—C14—C16−66.8 (2)
C7—N2—C6—C185.68 (18)C13—O2—C14—C15176.18 (18)
C10—N2—C6—C1−143.86 (16)C6—C5—C4—C3−1.1 (3)
C6—C1—C2—C3−0.7 (3)C2—C3—C4—C50.9 (3)
D—H···AD—HH···AD···AD—H···A
C10—H10B···O1i0.972.553.512 (2)171
C9—H9···O1ii0.932.283.194 (3)166
C2—H2···O10.932.322.911 (3)121
N1—HN1···N20.810 (19)2.28 (2)2.703 (2)114 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10B⋯O1i0.972.553.512 (2)171
C9—H9⋯O1ii0.932.283.194 (3)166
C2—H2⋯O10.932.322.911 (3)121
N1—HN1⋯N20.810 (19)2.28 (2)2.703 (2)114 (2)

Symmetry codes: (i) ; (ii) .

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